Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc06g065310.3 Solanum lycopersicum HOM05D004915 ORTHO05D006048 2.0e-152 542.3 264 100.0
Sopen06g023800 Solanum pennellii HOM05D004915 ORTHO05D006048 7.3e-147 523.9 264 96.2
PGSC0003DMG400026111 Solanum tuberosum HOM05D004915 ORTHO05D006048 7.9e-141 503.8 257 95.3
CAN.G199.5 Capsicum annuum HOM05D004915 ORTHO05D006048 4.6e-133 478.0 255 91.0
Nitab4.5_0000121g0120 Nicotiana tabacum HOM05D004915 ORTHO05D006048 7.4e-131 470.7 256 88.3
Peaxi162Scf00241g00416 Petunia axillaris HOM05D004915 ORTHO05D006048 1.3e-124 449.9 258 83.7
Peaxi162Scf00106g00016 Petunia axillaris HOM05D004915 ORTHO05D006048 5.0e-119 431.4 287 74.6
Oeu058311.1 Olea europaea HOM05D004915 ORTHO05D006048 1.8e-105 386.3 257 71.2
Prupe.5G195000 Prunus persica HOM05D004915 ORTHO05D006048 4.1e-105 385.2 258 69.8
MD06G1194800 Malus domestica HOM05D004915 ORTHO05D006048 5.9e-104 381.3 256 68.4
Migut.L00264 Erythranthe guttata HOM05D004915 ORTHO05D006048 1.7e-103 379.8 259 70.3
QL10p017218 Quercus lobata HOM05D004915 ORTHO05D006048 2.9e-103 379.0 258 70.5
Oeu037787.1 Olea europaea HOM05D004915 ORTHO05D006048 1.5e-102 376.7 270 68.5
Cc04_g16470 Coffea canephora HOM05D004915 ORTHO05D006048 4.2e-102 375.2 252 71.0
MD14G1201800 Malus domestica HOM05D004915 ORTHO05D006048 9.4e-102 374.0 256 67.6
Eucgr.B00520 Eucalyptus grandis HOM05D004915 ORTHO05D006048 1.2e-101 373.6 241 71.4
ECA246G2050 Erigeron canadensis HOM05D004915 ORTHO05D006048 2.1e-101 372.9 242 71.1
AUR62021031 Chenopodium quinoa HOM05D004915 ORTHO05D006048 3.6e-101 372.1 258 66.7
SGA_v2.0_scaffold17G08101 Striga asiatica HOM05D004915 ORTHO05D006048 4.7e-101 371.7 249 71.5
Lj5C110T19 Lonicera japonica HOM05D004915 ORTHO05D006048 8.0e-101 370.9 256 68.4
RcHm_v2.0_Chr7g0181591 Rosa chinensis HOM05D004915 ORTHO05D006048 8.0e-101 370.9 243 70.4
Aqoxy3G03429 Aquilegia oxysepala HOM05D004915 ORTHO05D006048 1.0e-100 370.5 255 65.5
Thecc.03G090400 Theobroma cacao HOM05D004915 ORTHO05D006048 1.0e-100 370.5 242 69.8
MSTRG.15680 Avicennia marina HOM05D004915 ORTHO05D006048 1.4e-100 370.2 258 66.7
Hma1.2p1_0060F.1_g033670 Hydrangea macrophylla HOM05D004915 ORTHO05D006048 1.4e-100 370.2 242 72.3
PSO478G3309 Papaver somniferum HOM05D004915 ORTHO05D006048 1.8e-100 369.8 257 67.3
Nn4g23203 Nelumbo nucifera HOM05D004915 ORTHO05D006048 4.0e-100 368.6 243 70.0
GSVIVG01007990001 Vitis vinifera HOM05D004915 ORTHO05D006048 6.7e-100 367.9 259 67.6
Duzib205G1074 Durio zibethinus HOM05D004915 ORTHO05D006048 8.8e-100 367.5 242 69.0
CiPaw.11G045800 Carya illinoinensis HOM05D004915 ORTHO05D006048 1.1e-99 367.1 241 71.0
Dinv37673 Davidia involucrata HOM05D004915 ORTHO05D006048 1.5e-99 366.7 247 68.4
FvH4_7g07490 Fragaria vesca HOM05D004915 ORTHO05D006048 1.5e-99 366.7 257 67.7
Cpa.g.sc179.53 Carica papaya HOM05D004915 ORTHO05D006048 2.6e-99 365.9 254 67.7
FAN10G0297 Fragaria x ananassa HOM05D004915 ORTHO05D006048 2.6e-99 365.9 257 67.3
TAR622G0868 Trochodendron aralioides HOM05D004915 ORTHO05D006048 3.3e-99 365.5 247 68.0
Phvul.008G037200 Phaseolus vulgaris HOM05D004915 ORTHO05D006048 1.3e-98 363.6 243 67.9
TWI34G1631 Tripterygium wilfordii HOM05D004915 ORTHO05D006048 1.3e-98 363.6 243 69.1
Ca_02901_v3 Cicer arietinum L. HOM05D004915 ORTHO05D006048 1.7e-98 363.2 243 67.9
FAN03G1016 Fragaria x ananassa HOM05D004915 ORTHO05D006048 1.7e-98 363.2 257 67.3
HanXRQChr08g0236601 Helianthus annuus HOM05D004915 ORTHO05D006048 1.7e-98 363.2 241 69.7
Atru.chr8.192 Acer truncatum HOM05D004915 ORTHO05D006048 2.2e-98 362.8 251 66.1
HanXRQChr09g0247201 Helianthus annuus HOM05D004915 ORTHO05D006048 3.7e-98 362.1 241 69.3
COL.COLO4_22946 Corchorus olitorius HOM05D004915 ORTHO05D006048 4.8e-98 361.7 234 70.5
Actinidia38781 Actinidia chinensis HOM05D004915 ORTHO05D006048 6.3e-98 361.3 259 65.3
Cfa018930 Carpinus fangiana HOM05D004915 ORTHO05D006048 8.2e-98 360.9 242 69.8
AUR62018412 Chenopodium quinoa HOM05D004915 ORTHO05D006048 1.1e-97 360.5 255 65.1
FAN08G1694 Fragaria x ananassa HOM05D004915 ORTHO05D006048 1.1e-97 360.5 258 67.1
TPR.G33578 Trifolium pratense HOM05D004915 ORTHO05D006048 1.1e-97 360.5 245 66.1
FAN18G3490 Fragaria x ananassa HOM05D004915 ORTHO05D006048 4.1e-97 358.6 258 66.7
FAN04G1144 Fragaria x ananassa HOM05D004915 ORTHO05D006048 7.0e-97 357.8 258 67.1
Rhsim08G0070400 Rhododendron simsii HOM05D004915 ORTHO05D006048 7.0e-97 357.8 255 65.5
Ciclev10012474m.g Citrus clementina HOM05D004915 ORTHO05D006048 9.1e-97 357.5 243 68.3
VMungo1383G0755 Vigna mungo HOM05D004915 ORTHO05D006048 9.1e-97 357.5 243 66.7
CSS0019190 Camellia sinensis var. sinensis HOM05D004915 ORTHO05D006048 1.6e-96 356.7 243 67.9
FvH4_5g14790 Fragaria vesca HOM05D004915 ORTHO05D006048 2.7e-96 355.9 258 66.7
Lj1g0024391 Lotus japonicus HOM05D004915 ORTHO05D006048 2.7e-96 355.9 249 65.9
Medtr7g011040 Medicago truncatula HOM05D004915 ORTHO05D006048 2.7e-96 355.9 245 66.1
arahy.Tifrunner.gnm1.ann1.BYQL86 Arachis hypogaea HOM05D004915 ORTHO05D006048 3.5e-96 355.5 242 67.8
Lalb_Chr23g0265041 Lupinus albus HOM05D004915 ORTHO05D006048 3.5e-96 355.5 240 67.9
FAN13G2234 Fragaria x ananassa HOM05D004915 ORTHO05D006048 4.5e-96 355.1 257 65.8
Potri.017G085100 Populus trichocarpa HOM05D004915 ORTHO05D006048 4.5e-96 355.1 247 66.0
Actinidia38763 Actinidia chinensis HOM05D004915 ORTHO05D006048 7.7e-96 354.4 269 62.8
TPR.G39201 Trifolium pratense HOM05D004915 ORTHO05D006048 7.7e-96 354.4 245 64.9
Carub.0005s0760 Capsella rubella HOM05D004915 ORTHO05D006048 1.3e-95 353.6 249 65.1
Medtr1g111380 Medicago truncatula HOM05D004915 ORTHO05D006048 1.7e-95 353.2 244 66.0
AL5G18870 Arabidopsis lyrata HOM05D004915 ORTHO05D006048 2.2e-95 352.8 251 63.7
MBI05_g33757_MAGBIO Magnolia biondii HOM05D004915 ORTHO05D006048 2.9e-95 352.4 243 69.1
Sabra17G0075000 Salix brachista HOM05D004915 ORTHO05D006048 2.9e-95 352.4 247 65.6
Manes.01G092400 Manihot esculenta HOM05D004915 ORTHO05D006048 3.8e-95 352.1 242 66.9
Sp2g17640 Schrenkiella parvula HOM05D004915 ORTHO05D006048 5.0e-95 351.7 256 62.5
Lsat_1_v5_gn_9_27040 Lactuca sativa HOM05D004915 ORTHO05D006048 1.5e-94 350.1 242 67.8
BcaC06g33662 Brassica carinata HOM05D004915 ORTHO05D006048 1.9e-94 349.7 248 63.7
C07p37910 Brassica napus HOM05D004915 ORTHO05D006048 1.9e-94 349.7 248 63.7
BolC7t44312H Brassica oleracea HOM05D004915 ORTHO05D006048 4.2e-94 348.6 248 63.7
ClCG04G012190 Citrullus lanatus HOM05D004915 ORTHO05D006048 4.2e-94 348.6 241 67.2
CARHR152100 Cardamine hirsuta HOM05D004915 ORTHO05D006048 5.5e-94 348.2 243 63.8
Glyma.09G236600 Glycine max HOM05D004915 ORTHO05D006048 5.5e-94 348.2 243 65.0
BraA06t26934Z Brassica rapa HOM05D004915 ORTHO05D006048 7.2e-94 347.8 243 65.0
Hund02640 Selenicereus undatus HOM05D004915 ORTHO05D006048 7.2e-94 347.8 257 62.3
A06p40200 Brassica napus HOM05D004915 ORTHO05D006048 9.4e-94 347.4 243 65.0
Thhalv10005292m.g Eutrema salsugineum HOM05D004915 ORTHO05D006048 9.4e-94 347.4 252 62.3
CsaV3_1G005570 Cucumis sativus L. HOM05D004915 ORTHO05D006048 1.2e-93 347.1 241 66.8
MELO3C001989.2 Cucumis melo HOM05D004915 ORTHO05D006048 1.6e-93 346.7 256 64.1
Lj4A111T68 Lonicera japonica HOM05D004915 ORTHO05D006048 4.7e-93 345.1 256 62.5
Psat3g200280 Pisum sativum HOM05D004915 ORTHO05D006048 4.7e-93 345.1 245 64.5
CARHR262560 Cardamine hirsuta HOM05D004915 ORTHO05D006048 1.0e-92 344.0 243 65.8
Haze_07314 Corylus avellana HOM05D004915 ORTHO05D006048 2.3e-92 342.8 277 60.6
DCAR_015957 Daucus carota HOM05D004915 ORTHO05D006048 2.3e-92 342.8 243 67.5
MBI05_g35466_MAGBIO Magnolia biondii HOM05D004915 ORTHO05D006048 2.3e-92 342.8 257 65.4
Aa31LG9G16420 Aethionema arabicum HOM05D004915 ORTHO05D006048 3.0e-92 342.4 241 65.6
Aa31LG2G4180 Aethionema arabicum HOM05D004915 ORTHO05D006048 5.2e-92 341.7 243 63.4
TAR374G0666 Trochodendron aralioides HOM05D004915 ORTHO05D006048 6.8e-92 341.3 226 69.5
EL10Ac3g07299 Beta vulgaris HOM05D004915 ORTHO05D006048 8.8e-92 340.9 291 58.8
BolC4t26193H Brassica oleracea HOM05D004915 ORTHO05D006048 1.2e-91 340.5 243 64.2
Sp7g02320 Schrenkiella parvula HOM05D004915 ORTHO05D006048 2.0e-91 339.7 243 63.8
Carub.0007s3626 Capsella rubella HOM05D004915 ORTHO05D006048 3.4e-91 339.0 249 63.9
Thhalv10027886m.g Eutrema salsugineum HOM05D004915 ORTHO05D006048 3.4e-91 339.0 243 65.0
C04p46080 Brassica napus HOM05D004915 ORTHO05D006048 4.4e-91 338.6 243 63.8
Os08g0435800 Oryza sativa ssp. japonica HOM05D004915 ORTHO05D006048 4.4e-91 338.6 248 64.9
BraA04t16903Z Brassica rapa HOM05D004915 ORTHO05D006048 5.7e-91 338.2 252 62.3
HPP92_002574 Vanilla planifolia HOM05D004915 ORTHO05D006048 7.5e-91 337.8 258 60.9
HPP92_002576 Vanilla planifolia HOM05D004915 ORTHO05D006048 7.5e-91 337.8 258 60.9
CANSAT56G1541 Cannabis sativa HOM05D004915 ORTHO05D006048 1.7e-90 336.7 238 66.0
A04p12400 Brassica napus HOM05D004915 ORTHO05D006048 2.8e-90 335.9 252 62.3
Zm00001eb211140 Zea mays HOM05D004915 ORTHO05D006048 1.1e-89 334.0 256 62.1
PGR083G1377 Punica granatum HOM05D004915 ORTHO05D006048 1.9e-86 323.2 219 69.4
SEGI_18610 Sequoiadendron giganteum HOM05D004915 ORTHO05D006048 4.0e-84 315.5 215 67.0
CSS0012692 Camellia sinensis var. sinensis HOM05D004915 ORTHO05D006048 6.8e-84 314.7 243 61.7
PGR031G1409 Punica granatum HOM05D004915 ORTHO05D006048 7.7e-80 301.2 213 66.2
Gorai.001G074400 Gossypium raimondii HOM05D004915 ORTHO05D006048 8.6e-79 297.7 197 68.0
Gohir.D07G070500 Gossypium hirsutum HOM05D004915 ORTHO05D006048 1.5e-78 297.0 197 68.0
THA.LOC104825807 Tarenaya hassleriana HOM05D004915 ORTHO05D006048 5.6e-78 295.0 272 53.7
Sed0011950 Sechium edule HOM05D004915 ORTHO05D006048 1.2e-77 293.9 178 77.0
AT3G29010 Arabidopsis thaliana HOM05D004915 ORTHO05D006048 8.0e-77 291.2 178 73.0
Mapoly0106s0015 Marchantia polymorpha HOM05D004915 ORTHO05D006048 2.9e-74 282.7 246 55.3
Sc04g0002730 Simmondsia chinensis HOM05D004915 ORTHO05D006048 3.7e-74 282.3 168 75.6
Pp3c2_33530 Physcomitrium patens HOM05D004915 ORTHO05D006048 1.1e-73 280.8 244 54.9
BcaB06g27359 Brassica carinata HOM05D004915 ORTHO05D006048 2.7e-72 276.2 243 57.2
AagrBONN_evm.TU.Sc2ySwM_344.3958 Anthoceros agrestis HOM05D004915 ORTHO05D006048 3.9e-71 272.3 225 56.9
Actinidia26226 Actinidia chinensis HOM05D004915 ORTHO05D006048 5.0e-71 271.9 240 56.2
Nitab4.5_0004528g0010 Nicotiana tabacum HOM05D004915 ORTHO05D006048 1.6e-69 266.9 293 52.6
SMO119G0486 Selaginella moellendorffii HOM05D004915 ORTHO05D006048 1.4e-68 263.8 222 54.5
ATR0626G227 Amborella trichopoda HOM05D004915 ORTHO05D006048 2.3e-68 263.1 196 60.2
CSS0012742 Camellia sinensis var. sinensis HOM05D004915 ORTHO05D006048 1.2e-67 260.8 247 51.8
AagrBONN_evm.TU.Sc2ySwM_362.689 Anthoceros agrestis HOM05D004915 ORTHO05D006048 6.6e-63 245.0 179 63.1
HPP92_002578 Vanilla planifolia HOM05D006076 ORTHO05D007871 5.8e-59 231.9 250 47.6
AagrBONN_evm.TU.Sc2ySwM_362.690 Anthoceros agrestis HOM05D004915 ORTHO05D006048 6.4e-58 228.4 168 63.1
Cre01.g053750 Chlamydomonas reinhardtii HOM05D004915 ORTHO05D006048 1.6e-56 223.8 210 51.4
MCO14G534 Micromonas commoda HOM05D004915 ORTHO05D006048 7.8e-56 221.5 227 48.9
QL06p014871 Quercus lobata HOM05D004915 ORTHO05D006048 1.7e-55 220.3 128 75.8
unitig_60.g25520 Utricularia gibba HOM05D004915 ORTHO05D006048 6.8e-52 208.4 252 48.4
HanXRQChr14g0437411 Helianthus annuus HOM05D004915 ORTHO05D006048 5.4e-49 198.7 128 71.1
Gohir.A07G066000 Gossypium hirsutum HOM05D004915 ORTHO05D006048 1.3e-47 194.1 136 64.7
HanXRQChr13g0408591 Helianthus annuus HOM05D004915 ORTHO05D006048 2.5e-46 189.9 126 69.0
Nitab4.5_0005170g0010 Nicotiana tabacum HOM05D004915 ORTHO05D006048 2.8e-45 186.4 110 81.8
vmacro05688 Vaccinium macrocarpon HOM05D004915 ORTHO05D006048 2.4e-44 183.3 139 61.2
SMO164G0178 Selaginella moellendorffii HOM05D004915 ORTHO05D006048 2.0e-43 180.3 233 41.2
CBR_g58409 Chara braunii HOM05D004915 ORTHO05D006048 5.8e-43 178.7 136 59.6
vmacro18186 Vaccinium macrocarpon HOM05D004915 ORTHO05D006048 1.3e-42 177.6 193 48.7
PRCOL_00000090 Prasinoderma coloniale HOM05D004915 ORTHO05D006048 2.9e-42 176.4 263 37.3
DCAR_026059 Daucus carota HOM05D004915 ORTHO05D006048 4.3e-38 162.5 113 63.7
FAN06G0706 Fragaria x ananassa HOM05D004915 ORTHO05D006048 2.2e-26 123.6 109 54.1
Ah.04g150570 Amaranthus hybridus HOM05D004915 ORTHO05D006048 4.9e-26 122.5 79 68.4
Nitab4.5_0005170g0060 Nicotiana tabacum HOM05D004915 ORTHO05D006048 6.0e-24 115.5 105 53.3
QL06p014899 Quercus lobata HOM05D004915 ORTHO05D006048 1.9e-22 110.5 65 70.8
ATR0642G001 Amborella trichopoda HOM05D004915 ORTHO05D006048 3.5e-16 89.7 50 84.0
DCAR_015961 Daucus carota HOM05D004915 ORTHO05D006048 2.6e-11 73.6 67 49.3
Pp3s30_306 Physcomitrium patens HOM05D004915 ORTHO05D043763 1.9e-09 67.4 128 33.6
Pp3c1_38790 Physcomitrium patens HOM05D004915 ORTHO05D315101 3.3e-06 56.6 40 62.5
Ah.04g150580 Amaranthus hybridus HOM05D004915 ORTHO05D006048 7.4e-06 55.5 69 42.0


User provided reference genes

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