Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc06g064610.1 Solanum lycopersicum HOM05D004137 ORTHO05D004804 2.4e-48 195.3 106 100.0
PGSC0003DMG400033149 Solanum tuberosum HOM05D004137 ORTHO05D004804 4.0e-43 177.9 106 87.7
Sopen06g023090 Solanum pennellii HOM05D004137 ORTHO05D004804 5.0e-38 161.0 93 87.1
Nitab4.5_0000528g0100 Nicotiana tabacum HOM05D004137 ORTHO05D004804 1.1e-19 100.1 64 70.3
Nitab4.5_0005935g0010 Nicotiana tabacum HOM05D004137 ORTHO05D004804 1.1e-19 100.1 64 70.3
PGSC0003DMG400037247 Solanum tuberosum HOM05D004137 ORTHO05D004804 2.0e-18 95.9 64 67.2
Solyc11g042440.1 Solanum lycopersicum HOM05D004137 ORTHO05D004804 3.7e-17 91.7 64 65.6
Sopen11g018520 Solanum pennellii HOM05D004137 ORTHO05D004804 6.4e-17 90.9 64 65.6
Haze_22939 Corylus avellana HOM05D004137 ORTHO05D004804 1.9e-16 89.4 68 58.8
CANSAT11G0501 Cannabis sativa HOM05D004137 ORTHO05D004804 5.4e-16 87.8 61 65.6
DCAR_023854 Daucus carota HOM05D004137 ORTHO05D004804 9.2e-16 87.0 77 55.8
Prupe.6G003100 Prunus persica HOM05D004137 ORTHO05D004804 9.2e-16 87.0 79 57.0
MD11G1003200 Malus domestica HOM05D004137 ORTHO05D004804 1.2e-15 86.7 79 58.2
QL01p003617 Quercus lobata HOM05D004137 ORTHO05D004804 2.1e-15 85.9 68 58.8
MD03G1003400 Malus domestica HOM05D004137 ORTHO05D004804 2.7e-15 85.5 60 65.0
CSS0017288 Camellia sinensis var. sinensis HOM05D004137 ORTHO05D004804 6.0e-15 84.3 62 59.7
FAN16G1350 Fragaria x ananassa HOM05D004137 ORTHO05D004804 1.0e-14 83.6 70 60.0
Nn7g35858 Nelumbo nucifera HOM05D004137 ORTHO05D004804 1.0e-14 83.6 79 55.7
FvH4_3g45760 Fragaria vesca HOM05D004137 ORTHO05D004804 3.0e-14 82.0 61 63.9
FAN21G2465 Fragaria x ananassa HOM05D004137 ORTHO05D004804 3.0e-14 82.0 61 63.9
CiPaw.13G177400 Carya illinoinensis HOM05D004137 ORTHO05D004804 3.9e-14 81.6 71 56.3
FAN11G0915 Fragaria x ananassa HOM05D004137 ORTHO05D004804 6.6e-14 80.9 61 62.3
FAN25G2990 Fragaria x ananassa HOM05D004137 ORTHO05D004804 8.6e-14 80.5 69 59.4
HanXRQChr01g0021421 Helianthus annuus HOM05D004137 ORTHO05D004804 8.6e-14 80.5 61 57.4
Lsat_1_v5_gn_1_68820 Lactuca sativa HOM05D004137 ORTHO05D004804 8.6e-14 80.5 62 58.1
RcHm_v2.0_Chr5g0083831 Rosa chinensis HOM05D004137 ORTHO05D004804 8.6e-14 80.5 70 57.1
ECA248G0157 Erigeron canadensis HOM05D004137 ORTHO05D004804 1.5e-13 79.7 62 56.5
Lj4g0013694 Lotus japonicus HOM05D004137 ORTHO05D004804 1.5e-13 79.7 60 55.0
Nn2g15861 Nelumbo nucifera HOM05D004137 ORTHO05D004804 4.3e-13 78.2 70 54.3
Psat7g063840 Pisum sativum HOM05D004137 ORTHO05D004804 4.3e-13 78.2 69 52.2
Migut.N00553 Erythranthe guttata HOM05D004137 ORTHO05D004804 5.6e-13 77.8 73 54.8
Medtr8g088460 Medicago truncatula HOM05D004137 ORTHO05D004804 5.6e-13 77.8 69 49.3
SGA_v2.0_scaffold3G01677 Striga asiatica HOM05D004137 ORTHO05D004804 5.6e-13 77.8 69 55.1
Cc01_g00130 Coffea canephora HOM05D004137 ORTHO05D004804 7.3e-13 77.4 73 53.4
Hma1.2p1_0241F.1_g100550 Hydrangea macrophylla HOM05D004137 ORTHO05D004804 9.5e-13 77.0 64 53.1
Lsat_1_v5_gn_1_59720 Lactuca sativa HOM05D004137 ORTHO05D004804 1.6e-12 76.3 77 50.6
Potri.001G003500 Populus trichocarpa HOM05D004137 ORTHO05D004804 2.1e-12 75.9 73 53.4
TAR623G1005 Trochodendron aralioides HOM05D004137 ORTHO05D004804 2.8e-12 75.5 70 54.3
TWI34G1879 Tripterygium wilfordii HOM05D004137 ORTHO05D004804 1.4e-11 73.2 61 55.7
ATR0737G017 Amborella trichopoda HOM05D004137 ORTHO05D004804 1.8e-11 72.8 78 51.3
Potri.003G221500 Populus trichocarpa HOM05D004137 ORTHO05D004804 2.3e-11 72.4 75 50.7
Ah.13g075420 Amaranthus hybridus HOM05D004137 ORTHO05D004804 3.1e-11 72.0 79 49.4
Migut.J01885 Erythranthe guttata HOM05D004137 ORTHO05D004804 4.0e-11 71.6 67 55.2
TWI60G1175 Tripterygium wilfordii HOM05D004137 ORTHO05D004804 5.2e-11 71.2 60 56.7
Atru.chr3.2107 Acer truncatum HOM05D004137 ORTHO05D004804 6.8e-11 70.9 63 52.4
Eucgr.B03601 Eucalyptus grandis HOM05D004137 ORTHO05D004804 8.9e-11 70.5 63 55.6
THA.LOC104811721 Tarenaya hassleriana HOM05D004137 ORTHO05D004804 8.9e-11 70.5 91 45.1
CARHR233900 Cardamine hirsuta HOM05D004137 ORTHO05D004804 1.2e-10 70.1 63 55.6
Lsat_1_v5_gn_2_50221 Lactuca sativa HOM05D004137 ORTHO05D004804 1.2e-10 70.1 70 44.3
A06p00220 Brassica napus HOM05D004137 ORTHO05D004804 3.4e-10 68.6 80 43.8
BraA06t23238Z Brassica rapa HOM05D004137 ORTHO05D004804 3.4e-10 68.6 80 43.8
Manes.08G144511 Manihot esculenta HOM05D004137 ORTHO05D004804 3.4e-10 68.6 62 50.0
CAN.G960.46 Capsicum annuum HOM05D004137 ORTHO05D004804 4.4e-10 68.2 65 50.8
Carub.0007s1461 Capsella rubella HOM05D004137 ORTHO05D004804 7.6e-10 67.4 63 52.4
QL04p040762 Quercus lobata HOM05D004137 ORTHO05D004804 7.6e-10 67.4 54 57.4
Cpa.g.c44905 Carica papaya HOM05D004137 ORTHO05D004804 9.9e-10 67.0 62 54.8
HanXRQChr02g0057501 Helianthus annuus HOM05D004137 ORTHO05D004804 9.9e-10 67.0 60 46.7
BcaC08g43620 Brassica carinata HOM05D004137 ORTHO05D004804 1.3e-09 66.6 70 45.7
C06p10340 Brassica napus HOM05D004137 ORTHO05D004804 1.3e-09 66.6 70 45.7
BolC6t36110H Brassica oleracea HOM05D004137 ORTHO05D004804 1.3e-09 66.6 70 45.7
Thhalv10011858m.g Eutrema salsugineum HOM05D004137 ORTHO05D004804 2.2e-09 65.9 70 44.3
Thhalv10027319m.g Eutrema salsugineum HOM05D004137 ORTHO05D004804 2.2e-09 65.9 63 54.0
Solyc10g078570.1 Solanum lycopersicum HOM05D004137 ORTHO05D004804 2.9e-09 65.5 72 47.2
PGSC0003DMG400008382 Solanum tuberosum HOM05D004137 ORTHO05D004804 2.9e-09 65.5 72 47.2
Carub.0001s4388 Capsella rubella HOM05D004137 ORTHO05D004804 4.9e-09 64.7 79 40.5
AL7G26620 Arabidopsis lyrata HOM05D004137 ORTHO05D004804 6.4e-09 64.3 62 51.6
Ciclev10017215m.g Citrus clementina HOM05D004137 ORTHO05D004804 6.4e-09 64.3 64 51.6
Lalb_Chr13g0295561 Lupinus albus HOM05D004137 ORTHO05D004804 8.4e-09 63.9 82 39.0
Manes.15G109500 Manihot esculenta HOM05D004137 ORTHO05D004804 8.4e-09 63.9 70 48.6
Sp7g24280 Schrenkiella parvula HOM05D004137 ORTHO05D004804 1.1e-08 63.5 63 50.8
Manes.09G141000 Manihot esculenta HOM05D004137 ORTHO05D004804 1.4e-08 63.2 80 37.5
Sp1g41045 Schrenkiella parvula HOM05D004137 ORTHO05D004804 1.9e-08 62.8 79 39.2
Potri.013G057832 Populus trichocarpa HOM05D004137 ORTHO05D004804 2.4e-08 62.4 61 47.5
BolC1t02148H Brassica oleracea HOM05D004137 ORTHO05D004804 3.2e-08 62.0 63 47.6
AL1G63420 Arabidopsis lyrata HOM05D004137 ORTHO05D004804 4.1e-08 61.6 81 39.5
BcaC09g50691 Brassica carinata HOM05D004137 ORTHO05D004804 4.1e-08 61.6 63 47.6
BcaNung02428 Brassica carinata HOM05D004137 ORTHO05D004804 4.1e-08 61.6 63 50.8
vmacro20990 Vaccinium macrocarpon HOM05D004137 ORTHO05D004804 4.1e-08 61.6 61 52.5
AT5G56520 Arabidopsis thaliana HOM05D004137 ORTHO05D004804 5.4e-08 61.2 63 52.4
AT1G55365 Arabidopsis thaliana HOM05D004137 ORTHO05D004804 7.1e-08 60.8 81 38.3
C01p22180 Brassica napus HOM05D004137 ORTHO05D004804 7.1e-08 60.8 63 47.6
Manes.03G087303 Manihot esculenta HOM05D004137 ORTHO05D004804 7.1e-08 60.8 74 45.9
Peaxi162Scf00078g00515 Petunia axillaris HOM05D004137 ORTHO05D004804 7.1e-08 60.8 39 71.8
A08p00680 Brassica napus HOM05D004137 ORTHO05D004804 9.2e-08 60.5 70 41.4
BraA08t32126Z Brassica rapa HOM05D004137 ORTHO05D004804 9.2e-08 60.5 70 41.4
Phvul.002G247400 Phaseolus vulgaris HOM05D004137 ORTHO05D004804 9.2e-08 60.5 66 48.5
C07p54810 Brassica napus HOM05D004137 ORTHO05D004804 1.2e-07 60.1 68 45.6
BolC7t45970H Brassica oleracea HOM05D004137 ORTHO05D004804 1.2e-07 60.1 68 45.6
Glyma.08G125200 Glycine max HOM05D004137 ORTHO05D004804 1.2e-07 60.1 81 43.2
AL8G32280 Arabidopsis lyrata HOM05D004137 ORTHO05D004804 1.6e-07 59.7 63 49.2
C03p92680 Brassica napus HOM05D004137 ORTHO05D004804 1.6e-07 59.7 74 40.5
VMungo1383G2992 Vigna mungo HOM05D001291 ORTHO05D004804 1.6e-07 59.7 79 43.0
BcaB04g16959 Brassica carinata HOM05D004137 ORTHO05D004804 2.1e-07 59.3 70 42.9
BraA01t01711Z Brassica rapa HOM05D004137 ORTHO05D004804 2.1e-07 59.3 101 35.6
BcaC01g01518 Brassica carinata HOM05D004137 ORTHO05D004804 2.7e-07 58.9 74 40.5
BolC3t21580H Brassica oleracea HOM05D004137 ORTHO05D004804 3.5e-07 58.5 74 40.5
Sed0012847 Sechium edule HOM05D004137 ORTHO05D004804 3.5e-07 58.5 61 42.6
BcaC08g44196 Brassica carinata HOM05D004137 ORTHO05D004804 4.6e-07 58.2 64 37.5
A05p17500 Brassica napus HOM05D004137 ORTHO05D004804 4.6e-07 58.2 64 37.5
BolC6t36802H Brassica oleracea HOM05D004137 ORTHO05D004804 4.6e-07 58.2 64 37.5
Potri.013G057766 Populus trichocarpa HOM05D004137 ORTHO05D004804 4.6e-07 58.2 81 42.0
unitig_0.g1150 Utricularia gibba HOM05D004137 ORTHO05D004804 4.6e-07 58.2 62 46.8
BcaC06g32758 Brassica carinata HOM05D004137 ORTHO05D004804 6.0e-07 57.8 68 44.1
BraA03t14731Z Brassica rapa HOM05D004137 ORTHO05D004804 6.0e-07 57.8 68 44.1
Thhalv10015369m.g Eutrema salsugineum HOM05D004137 ORTHO05D004804 7.8e-07 57.4 71 45.1
BcaC04g20079 Brassica carinata HOM05D004137 ORTHO05D004804 1.3e-06 56.6 63 47.6
A03p56610 Brassica napus HOM05D004137 ORTHO05D004804 1.3e-06 56.6 68 42.6
A10p13890 Brassica napus HOM05D004137 ORTHO05D004804 1.3e-06 56.6 63 46.0
C09p48110 Brassica napus HOM05D004137 ORTHO05D004804 1.3e-06 56.6 63 47.6
BolC9t57661H Brassica oleracea HOM05D004137 ORTHO05D004804 1.3e-06 56.6 63 47.6
BraA10t43481Z Brassica rapa HOM05D004137 ORTHO05D004804 1.3e-06 56.6 63 46.0
Aa31LG3G12400 Aethionema arabicum HOM05D004137 ORTHO05D004804 1.7e-06 56.2 63 42.9
THA.LOC104810322 Tarenaya hassleriana HOM05D004137 ORTHO05D004804 1.7e-06 56.2 70 41.4
A01p17580 Brassica napus HOM05D004137 ORTHO05D004804 2.3e-06 55.8 63 46.0
CARHR045030 Cardamine hirsuta HOM05D004137 ORTHO05D004804 3.0e-06 55.5 80 36.2
Cfa016445 Carpinus fangiana HOM05D001721 ORTHO05D001804 3.0e-06 55.5 55 47.3
Cc06_g23020 Coffea canephora HOM05D004137 ORTHO05D004804 3.0e-06 55.5 69 44.9
Haze_19423 Corylus avellana HOM05D004137 ORTHO05D004804 3.0e-06 55.5 55 47.3
Carub.0008s1700 Capsella rubella HOM05D004137 ORTHO05D004804 3.9e-06 55.1 63 46.0
Lalb_Chr07g0185901 Lupinus albus HOM05D004137 ORTHO05D004804 6.6e-06 54.3 58 41.4
Gohir.A12G175500 Gossypium hirsutum HOM05D004137 ORTHO05D004804 8.6e-06 53.9 79 36.7
Gohir.D12G178750 Gossypium hirsutum HOM05D004137 ORTHO05D004804 8.6e-06 53.9 61 42.6
Gorai.008G191500 Gossypium raimondii HOM05D004137 ORTHO05D004804 8.6e-06 53.9 61 42.6


User provided reference genes

Program Settings