Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc06g064450.3 Solanum lycopersicum HOM05D004360 ORTHO05D005195 2.6e-98 362.1 185 100.0
Sopen06g022920 Solanum pennellii HOM05D004360 ORTHO05D005195 2.9e-97 358.6 185 98.9
PGSC0003DMG400033136 Solanum tuberosum HOM05D004360 ORTHO05D005195 1.6e-95 352.8 185 97.3
CAN.G14.46 Capsicum annuum HOM05D004360 ORTHO05D005195 1.0e-86 323.6 176 91.5
Nitab4.5_0007335g0050 Nicotiana tabacum HOM05D004360 ORTHO05D005195 1.2e-74 283.5 185 78.9
Nitab4.5_0007657g0070 Nicotiana tabacum HOM05D004360 ORTHO05D005195 6.4e-73 277.7 192 76.0
Peaxi162Scf00818g00320 Petunia axillaris HOM05D004360 ORTHO05D005195 4.3e-69 265.0 180 74.4
Solyc11g045030.2 Solanum lycopersicum HOM05D004360 ORTHO05D005195 8.1e-68 260.8 201 66.2
Sopen11g020480 Solanum pennellii HOM05D004360 ORTHO05D005195 3.1e-67 258.8 201 67.2
Hma1.2p1_0016F.1_g010960 Hydrangea macrophylla HOM05D004360 ORTHO05D005195 9.0e-67 257.3 177 72.3
PGSC0003DMG400006668 Solanum tuberosum HOM05D004360 ORTHO05D005195 2.0e-66 256.1 201 66.2
TWI12G0674 Tripterygium wilfordii HOM05D004360 ORTHO05D005195 2.0e-66 256.1 181 74.6
Actinidia01542 Actinidia chinensis HOM05D004360 ORTHO05D005195 1.3e-65 253.4 178 73.6
Lj3g0027106 Lotus japonicus HOM05D004360 ORTHO05D005195 1.7e-65 253.1 178 71.9
CSS0027083 Camellia sinensis var. sinensis HOM05D004360 ORTHO05D005195 2.2e-65 252.7 179 73.2
Peaxi162Scf00078g00103 Petunia axillaris HOM05D004360 ORTHO05D005195 2.9e-65 252.3 194 67.0
GSVIVG01037160001 Vitis vinifera HOM05D004360 ORTHO05D005195 1.4e-64 250.0 177 70.6
Lj7A416T39 Lonicera japonica HOM05D004360 ORTHO05D005195 1.9e-64 249.6 172 73.3
Glyma.04G110500 Glycine max HOM05D004360 ORTHO05D005195 2.4e-64 249.2 185 69.7
Manes.02G202700 Manihot esculenta HOM05D004360 ORTHO05D005195 2.4e-64 249.2 182 69.2
TAR628G1251 Trochodendron aralioides HOM05D004360 ORTHO05D005195 4.2e-64 248.4 180 70.6
PGR083G1110 Punica granatum HOM05D004360 ORTHO05D005195 5.5e-64 248.1 175 68.0
Psat5g232320 Pisum sativum HOM05D004360 ORTHO05D005195 7.1e-64 247.7 176 70.5
SGA_v2.0_scaffold118G32638 Striga asiatica HOM05D004360 ORTHO05D005195 9.3e-64 247.3 195 67.7
Potri.013G095200 Populus trichocarpa HOM05D004360 ORTHO05D005195 1.2e-63 246.9 175 68.0
Glyma.06G323900 Glycine max HOM05D004360 ORTHO05D005195 2.1e-63 246.1 177 68.9
Oeu020627.1 Olea europaea HOM05D004360 ORTHO05D005195 6.0e-63 244.6 176 68.8
Potri.003G048300 Populus trichocarpa HOM05D004360 ORTHO05D005195 6.0e-63 244.6 175 68.6
Cc10_g16090 Coffea canephora HOM05D004360 ORTHO05D005195 7.9e-63 244.2 174 71.3
CANSAT56G1596 Cannabis sativa HOM05D004360 ORTHO05D005195 1.0e-62 243.8 174 70.7
TPR.G25525 Trifolium pratense HOM05D004360 ORTHO05D005195 1.0e-62 243.8 177 68.9
CsaV3_2G033320 Cucumis sativus L. HOM05D004360 ORTHO05D005195 1.8e-62 243.0 175 72.0
COL.COLO4_25070 Corchorus olitorius HOM05D004360 ORTHO05D005195 2.3e-62 242.7 174 71.3
MELO3C008103.2 Cucumis melo HOM05D004360 ORTHO05D005195 2.3e-62 242.7 175 72.0
QL09p001278 Quercus lobata HOM05D004360 ORTHO05D005195 3.0e-62 242.3 175 68.6
Thhalv10008879m.g Eutrema salsugineum HOM05D004360 ORTHO05D005195 3.9e-62 241.9 178 66.9
MD05G1006100 Malus domestica HOM05D004360 ORTHO05D005195 1.1e-61 240.4 177 68.4
A09p32780 Brassica napus HOM05D004360 ORTHO05D005195 1.5e-61 240.0 162 71.0
BraA09t38813Z Brassica rapa HOM05D004360 ORTHO05D005195 1.5e-61 240.0 162 71.0
DCAR_014061 Daucus carota HOM05D004360 ORTHO05D005195 1.5e-61 240.0 184 65.2
THA.LOC104806751 Tarenaya hassleriana HOM05D004360 ORTHO05D005195 1.9e-61 239.6 176 66.5
BcaC08g43849 Brassica carinata HOM05D004360 ORTHO05D005195 2.5e-61 239.2 178 66.3
BolC6t36383H Brassica oleracea HOM05D004360 ORTHO05D005195 2.5e-61 239.2 178 66.3
CAN.G970.20 Capsicum annuum HOM05D004360 ORTHO05D005195 2.5e-61 239.2 204 61.8
Medtr3g006190 Medicago truncatula HOM05D004360 ORTHO05D005195 2.5e-61 239.2 177 68.4
Oeu028624.1 Olea europaea HOM05D004360 ORTHO05D005195 2.5e-61 239.2 192 65.1
AL1G47880 Arabidopsis lyrata HOM05D004360 ORTHO05D005195 3.3e-61 238.8 162 71.6
CARHR261230 Cardamine hirsuta HOM05D004360 ORTHO05D005195 4.3e-61 238.4 178 66.9
Lalb_Chr18g0048451 Lupinus albus HOM05D004360 ORTHO05D005195 7.4e-61 237.7 175 68.0
Sp6g07270 Schrenkiella parvula HOM05D004360 ORTHO05D005195 7.4e-61 237.7 178 66.9
arahy.Tifrunner.gnm1.ann1.4Y3JNF Arachis hypogaea HOM05D004360 ORTHO05D005195 9.6e-61 237.3 178 69.1
Prupe.8G003400 Prunus persica HOM05D004360 ORTHO05D005195 9.6e-61 237.3 169 71.0
Carub.0001s3168 Capsella rubella HOM05D004360 ORTHO05D005195 1.3e-60 236.9 159 72.3
Nitab4.5_0000079g0160 Nicotiana tabacum HOM05D004360 ORTHO05D005195 1.3e-60 236.9 201 62.7
Carub.0006s2871 Capsella rubella HOM05D004360 ORTHO05D005195 1.6e-60 236.5 178 65.2
Manes.18G109100 Manihot esculenta HOM05D004360 ORTHO05D005195 1.6e-60 236.5 177 67.8
C06p12320 Brassica napus HOM05D004360 ORTHO05D005195 2.8e-60 235.7 178 65.7
Nn5g27232 Nelumbo nucifera HOM05D004360 ORTHO05D005195 2.8e-60 235.7 174 68.4
Phvul.005G002300 Phaseolus vulgaris HOM05D004360 ORTHO05D005195 3.7e-60 235.3 175 67.4
unitig_8.g4904 Utricularia gibba HOM05D004360 ORTHO05D005195 3.7e-60 235.3 178 64.0
Thhalv10029009m.g Eutrema salsugineum HOM05D004360 ORTHO05D005195 4.8e-60 235.0 174 67.8
MBI03_g07140_MAGBIO Magnolia biondii HOM05D004360 ORTHO05D005195 4.8e-60 235.0 175 65.7
BcaB07g32992 Brassica carinata HOM05D004360 ORTHO05D005195 8.1e-60 234.2 159 73.0
AL6G43950 Arabidopsis lyrata HOM05D004360 ORTHO05D005195 1.1e-59 233.8 179 65.9
CDE08G1539 Ceratophyllum demersum HOM05D004360 ORTHO05D005195 1.1e-59 233.8 174 66.7
ClCG11G008280 Citrullus lanatus HOM05D004360 ORTHO05D005195 1.8e-59 233.0 171 70.2
A02p26710 Brassica napus HOM05D004360 ORTHO05D005195 2.4e-59 232.6 178 65.2
BraA02t07674Z Brassica rapa HOM05D004360 ORTHO05D005195 2.4e-59 232.6 178 65.2
MSTRG.1609 Avicennia marina HOM05D004360 ORTHO05D005195 3.1e-59 232.3 170 70.0
Aa31LG6G7960 Aethionema arabicum HOM05D004360 ORTHO05D005195 5.3e-59 231.5 188 65.4
ATR1089G020 Amborella trichopoda HOM05D004360 ORTHO05D005195 6.9e-59 231.1 179 64.2
AT4G10140 Arabidopsis thaliana HOM05D004360 ORTHO05D005195 6.9e-59 231.1 178 65.2
BcaB05g23914 Brassica carinata HOM05D004360 ORTHO05D005195 6.9e-59 231.1 178 64.6
A09p28790 Brassica napus HOM05D004360 ORTHO05D005195 6.9e-59 231.1 178 65.2
AUR62013395 Chenopodium quinoa HOM05D004360 ORTHO05D005195 6.9e-59 231.1 179 67.0
Gohir.A05G248500 Gossypium hirsutum HOM05D004360 ORTHO05D005195 6.9e-59 231.1 174 64.9
Thecc.08G168700 Theobroma cacao HOM05D004360 ORTHO05D005195 6.9e-59 231.1 169 69.8
BcaC03g16418 Brassica carinata HOM05D004360 ORTHO05D005195 9.0e-59 230.7 178 64.6
C02p42460 Brassica napus HOM05D004360 ORTHO05D005195 9.0e-59 230.7 178 64.6
Sed0011254 Sechium edule HOM05D004360 ORTHO05D005195 9.0e-59 230.7 175 68.6
AUR62038546 Chenopodium quinoa HOM05D004360 ORTHO05D005195 1.2e-58 230.3 179 66.5
HPP92_001197 Vanilla planifolia HOM05D004360 ORTHO05D005195 1.2e-58 230.3 174 63.8
VMungo1080G0197 Vigna mungo HOM05D004360 ORTHO05D005195 1.2e-58 230.3 172 69.2
EL10Ac1g01286 Beta vulgaris HOM05D004360 ORTHO05D005195 1.5e-58 229.9 157 71.3
Atru.chr13.2581 Acer truncatum HOM05D004360 ORTHO05D005195 2.0e-58 229.6 177 63.3
Gohir.D05G250900 Gossypium hirsutum HOM05D004360 ORTHO05D005195 2.0e-58 229.6 174 64.4
Gorai.009G262300 Gossypium raimondii HOM05D004360 ORTHO05D005195 2.0e-58 229.6 174 64.4
Aqoxy5G01853 Aquilegia oxysepala HOM05D004360 ORTHO05D005195 5.8e-58 228.0 183 65.6
Duzib116G0053 Durio zibethinus HOM05D004360 ORTHO05D005195 7.6e-58 227.6 174 66.1
PSO761G0584 Papaver somniferum HOM05D004360 ORTHO05D005195 7.6e-58 227.6 174 67.2
AUR62038559 Chenopodium quinoa HOM05D004360 ORTHO05D005195 1.7e-57 226.5 164 68.9
Eucgr.F04085 Eucalyptus grandis HOM05D004360 ORTHO05D005195 1.7e-57 226.5 174 63.8
Hund16918 Selenicereus undatus HOM05D004360 ORTHO05D005195 1.7e-57 226.5 177 61.6
RcHm_v2.0_Chr6g0249591 Rosa chinensis HOM05D004360 ORTHO05D005195 3.8e-57 225.3 162 68.5
SEGI_09604 Sequoiadendron giganteum HOM05D004360 ORTHO05D005195 3.8e-57 225.3 177 63.8
Actinidia29366 Actinidia chinensis HOM05D004360 ORTHO05D005195 4.9e-57 224.9 206 58.3
PSO210G5265 Papaver somniferum HOM05D004360 ORTHO05D005195 8.4e-57 224.2 169 67.5
Ciclev10022474m.g Citrus clementina HOM05D004360 ORTHO05D005195 1.4e-56 223.4 173 64.7
Psat7g229800 Pisum sativum HOM05D004360 ORTHO05D005195 1.4e-56 223.4 175 64.6
TWI18G1157 Tripterygium wilfordii HOM05D004360 ORTHO05D005195 3.2e-56 222.2 163 71.2
MD10G1002100 Malus domestica HOM05D004360 ORTHO05D005195 4.2e-56 221.9 172 65.7
FAN20G2250 Fragaria x ananassa HOM05D004360 ORTHO05D005195 7.1e-56 221.1 163 67.5
FvH4_2g00310 Fragaria vesca HOM05D004360 ORTHO05D005195 1.6e-55 219.9 165 67.3
C09p36560 Brassica napus HOM05D004360 ORTHO05D005195 2.1e-55 219.5 170 67.1
Lalb_Chr01g0008181 Lupinus albus HOM05D004360 ORTHO05D005195 3.5e-55 218.8 178 63.5
ECA247G3060 Erigeron canadensis HOM05D004360 ORTHO05D005195 7.9e-55 217.6 162 68.5
Sed0002471 Sechium edule HOM05D004360 ORTHO05D005195 7.9e-55 217.6 158 69.0
arahy.Tifrunner.gnm1.ann1.19X5J5 Arachis hypogaea HOM05D004360 ORTHO05D005195 2.3e-54 216.1 160 70.6
HanXRQChr12g0369241 Helianthus annuus HOM05D004360 ORTHO05D005195 2.3e-54 216.1 176 63.6
BraA09t38441Z Brassica rapa HOM05D004360 ORTHO05D005195 3.0e-54 215.7 207 56.0
Os05g0105500 Oryza sativa ssp. japonica HOM05D004360 ORTHO05D005195 3.9e-54 215.3 158 63.3
Rhsim12G0001800 Rhododendron simsii HOM05D004360 ORTHO05D005195 3.9e-54 215.3 225 53.3
Medtr4g030060 Medicago truncatula HOM05D004360 ORTHO05D005195 5.1e-54 214.9 173 63.0
Aa31LG9G11860 Aethionema arabicum HOM05D004360 ORTHO05D005195 8.7e-54 214.2 205 56.1
BolC2t10286H Brassica oleracea HOM05D004360 ORTHO05D005195 1.5e-53 213.4 159 67.9
Lsat_1_v5_gn_1_24560 Lactuca sativa HOM05D004360 ORTHO05D005195 9.6e-53 210.7 174 64.4
HPP92_009217 Vanilla planifolia HOM05D004360 ORTHO05D005195 1.3e-52 210.3 172 62.2
Lsat_1_v5_gn_6_109600 Lactuca sativa HOM05D004360 ORTHO05D005195 1.6e-52 209.9 173 64.2
CDE02G3351 Ceratophyllum demersum HOM05D004360 ORTHO05D005195 3.7e-52 208.8 157 66.9
Gohir.D08G249500 Gossypium hirsutum HOM05D004360 ORTHO05D005195 6.3e-52 208.0 156 66.7
Gorai.004G266100 Gossypium raimondii HOM05D004360 ORTHO05D005195 6.3e-52 208.0 156 66.7
Gohir.A08G229200 Gossypium hirsutum HOM05D004360 ORTHO05D005195 8.2e-52 207.6 156 66.0
HanXRQChr05g0150501 Helianthus annuus HOM05D004360 ORTHO05D005195 1.1e-51 207.2 177 61.6
BcaC04g21022 Brassica carinata HOM05D004360 ORTHO05D005195 2.4e-51 206.1 159 67.3
BolC9t56489H Brassica oleracea HOM05D004360 ORTHO05D005195 9.0e-51 204.1 199 57.3
HanXRQChr08g0226271 Helianthus annuus HOM05D004360 ORTHO05D005195 1.2e-50 203.8 178 60.7
Zm00001eb289060 Zea mays HOM05D004360 ORTHO05D005195 1.2e-50 203.8 161 62.1
Zm00001eb207120 Zea mays HOM05D004360 ORTHO05D005195 2.2e-49 199.5 158 60.8
Migut.C01399 Erythranthe guttata HOM05D004360 ORTHO05D005195 1.2e-47 193.7 132 72.0
Sp1g28930 Schrenkiella parvula HOM05D004360 ORTHO05D002912 7.9e-47 191.0 128 74.2
Haze_14005 Corylus avellana HOM05D004360 ORTHO05D005195 1.8e-46 189.9 122 77.0
BcaB01g01456 Brassica carinata HOM05D004360 ORTHO05D005195 3.0e-46 189.1 158 63.9
AT1G33490 Arabidopsis thaliana HOM05D004360 ORTHO05D005195 1.5e-45 186.8 120 76.7
CiPaw.03G012600 Carya illinoinensis HOM05D004360 ORTHO05D005195 1.5e-45 186.8 127 73.2
CARHR032930 Cardamine hirsuta HOM05D004360 ORTHO05D005195 3.3e-45 185.7 124 73.4
DCAR_003506 Daucus carota HOM05D005117 ORTHO05D005956 4.3e-45 185.3 130 70.8
Sabra13G0081200 Salix brachista HOM05D004360 ORTHO05D005195 9.7e-45 184.1 128 68.8
Sc06g0000070 Simmondsia chinensis HOM05D004360 ORTHO05D005195 2.2e-44 183.0 117 72.6
Duzib116G0205 Durio zibethinus HOM05D004360 ORTHO05D005195 6.9e-43 177.9 119 71.4
Dinv37400 Davidia involucrata HOM05D004360 ORTHO05D005195 4.5e-42 175.3 122 73.0
AagrBONN_evm.TU.Sc2ySwM_368.413 Anthoceros agrestis HOM05D004360 ORTHO05D005195 1.3e-41 173.7 140 60.7
Pp3c23_11640 Physcomitrium patens HOM05D004360 ORTHO05D005195 6.5e-41 171.4 162 54.9
SMO143G0101 Selaginella moellendorffii HOM05D004360 ORTHO05D005195 1.4e-40 170.2 152 54.6
Ah.05g170480 Amaranthus hybridus HOM05D004360 ORTHO05D005195 1.9e-40 169.9 135 66.7
PSO210G7326 Papaver somniferum HOM05D004360 ORTHO05D005195 2.5e-40 169.5 134 65.7
TPR.G4421 Trifolium pratense HOM05D004360 ORTHO05D001407 3.2e-40 169.1 130 63.1
SHI16862 Sapria himalayana HOM05D004360 ORTHO05D005195 9.4e-40 167.5 118 69.5
SMO356G0006 Selaginella moellendorffii HOM05D004360 ORTHO05D005195 1.8e-38 163.3 151 53.6
Pp3c17_19860 Physcomitrium patens HOM05D004360 ORTHO05D005195 1.1e-37 160.6 144 54.9
Mapoly0022s0158 Marchantia polymorpha HOM05D004360 ORTHO05D005195 5.7e-37 158.3 168 48.8
CBR_g61487 Chara braunii HOM05D004360 ORTHO05D005195 4.1e-35 152.1 151 51.0
SEGI_01847 Sequoiadendron giganteum HOM05D004360 ORTHO05D005195 1.3e-33 147.1 153 48.4
unitig_578.g16114 Utricularia gibba HOM05D004360 ORTHO05D005195 3.6e-31 139.0 116 58.6
BcaB01g01455 Brassica carinata HOM05D004360 ORTHO05D005195 8.8e-30 134.4 89 71.9
ECA246G3009 Erigeron canadensis HOM05D004360 ORTHO05D005195 7.0e-27 124.8 108 61.1
TAR375G0667 Trochodendron aralioides HOM05D004360 ORTHO05D005195 2.7e-23 112.8 109 55.0
FAN24G1049 Fragaria x ananassa HOM05D004360 ORTHO05D005195 1.4e-22 110.5 151 44.4
HanXRQChr09g0244511 Helianthus annuus HOM05D004360 ORTHO05D005195 1.6e-18 97.1 86 61.6
Pp3c14_12450 Physcomitrium patens HOM05D004360 ORTHO05D005195 1.7e-12 77.0 94 41.5
TPR.G39583 Trifolium pratense HOM05D004360 ORTHO05D005195 1.3e-09 67.4 57 61.4
Dinv02982 Davidia involucrata HOM05D004360 ORTHO05D005195 9.5e-08 61.2 53 60.4
Dinv17160 Davidia involucrata HOM05D004360 ORTHO05D005195 9.5e-08 61.2 53 60.4
arahy.Tifrunner.gnm1.ann1.B7FYB2 Arachis hypogaea HOM05D001689 ORTHO05D001643 3.6e-07 59.3 44 63.6
Dinv04074 Davidia involucrata HOM05D004360 ORTHO05D005195 6.1e-07 58.5 54 57.4
Dinv08764 Davidia involucrata HOM05D004360 ORTHO05D005195 8.0e-07 58.2 46 60.9


User provided reference genes

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