Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc06g063310.2 Solanum lycopersicum HOM05D004945 ORTHO05D005536 9.3e-46 186.4 88 100.0
Sopen06g022780 Solanum pennellii HOM05D004945 ORTHO05D005536 9.3e-46 186.4 88 100.0
PGSC0003DMG400026503 Solanum tuberosum HOM05D004945 ORTHO05D005536 3.1e-41 171.4 88 88.6
CAN.G308.14 Capsicum annuum HOM05D004945 ORTHO05D005536 5.3e-41 170.6 85 92.9
Nitab4.5_0003757g0090 Nicotiana tabacum HOM05D004945 ORTHO05D005536 2.4e-38 161.8 84 88.1
Potri.018G142500 Populus trichocarpa HOM05D004945 ORTHO05D005536 1.1e-35 152.9 91 75.8
CiPaw.09G075900 Carya illinoinensis HOM05D004945 ORTHO05D005536 1.5e-35 152.5 87 78.2
Manes.06G020000 Manihot esculenta HOM05D004945 ORTHO05D005536 1.5e-35 152.5 87 78.2
Prupe.1G075600 Prunus persica HOM05D004945 ORTHO05D005536 3.3e-35 151.4 87 78.2
Hma1.2p1_0517F.1_g170730 Hydrangea macrophylla HOM05D004945 ORTHO05D005536 5.6e-35 150.6 91 75.8
CiPaw.10G063900 Carya illinoinensis HOM05D004945 ORTHO05D005536 9.6e-35 149.8 93 75.3
Rhsim08G0249700 Rhododendron simsii HOM05D004945 ORTHO05D005536 1.3e-34 149.4 93 73.1
MD07G1027600 Malus domestica HOM05D004945 ORTHO05D005536 1.6e-34 149.1 87 77.0
Sc12g0011140 Simmondsia chinensis HOM05D004945 ORTHO05D005536 2.1e-34 148.7 89 77.5
Gohir.D13G212800 Gossypium hirsutum HOM05D004945 ORTHO05D005536 2.8e-34 148.3 87 73.6
Gorai.013G243200 Gossypium raimondii HOM05D004945 ORTHO05D005536 2.8e-34 148.3 87 73.6
QL11p014429 Quercus lobata HOM05D004945 ORTHO05D005536 4.8e-34 147.5 90 74.4
Sed0015624 Sechium edule HOM05D004945 ORTHO05D005536 4.8e-34 147.5 91 74.7
TWI34G0510 Tripterygium wilfordii HOM05D004945 ORTHO05D005536 4.8e-34 147.5 92 71.7
TWI63G0641 Tripterygium wilfordii HOM05D004945 ORTHO05D005536 4.8e-34 147.5 87 74.7
Cpa.g.sc95.12 Carica papaya HOM05D004945 ORTHO05D005536 6.2e-34 147.1 91 73.6
Gohir.D13G212900 Gossypium hirsutum HOM05D004945 ORTHO05D005536 6.2e-34 147.1 87 72.4
QL11p013920 Quercus lobata HOM05D004945 ORTHO05D005536 6.2e-34 147.1 90 73.3
Sed0005101 Sechium edule HOM05D004945 ORTHO05D005536 6.2e-34 147.1 91 74.7
TAR625G1304 Trochodendron aralioides HOM05D004945 ORTHO05D005536 6.2e-34 147.1 91 73.6
Actinidia38805 Actinidia chinensis HOM05D004945 ORTHO05D005536 8.1e-34 146.7 91 71.4
Gohir.A13G208400 Gossypium hirsutum HOM05D004945 ORTHO05D005536 8.1e-34 146.7 87 72.4
Haze_06091 Corylus avellana HOM05D004945 ORTHO05D005536 1.1e-33 146.4 93 72.0
PGR142G1282 Punica granatum HOM05D004945 ORTHO05D005536 1.1e-33 146.4 91 72.5
Duzib150G0603 Durio zibethinus HOM05D004945 ORTHO05D005536 1.4e-33 146.0 87 72.4
Potri.006G075600 Populus trichocarpa HOM05D004945 ORTHO05D005536 1.4e-33 146.0 91 72.5
COL.COLO4_22793 Corchorus olitorius HOM05D004945 ORTHO05D005536 1.8e-33 145.6 91 72.5
Gohir.A13G208500 Gossypium hirsutum HOM05D004945 ORTHO05D005536 1.8e-33 145.6 87 72.4
MD13G1241900 Malus domestica HOM05D004945 ORTHO05D005536 1.8e-33 145.6 87 75.9
Sabra18G0116400 Salix brachista HOM05D004945 ORTHO05D005536 2.4e-33 145.2 87 72.4
THA.LOC104803956 Tarenaya hassleriana HOM05D004945 ORTHO05D005536 3.1e-33 144.8 91 74.7
THA.LOC104803979 Tarenaya hassleriana HOM05D004945 ORTHO05D005536 3.1e-33 144.8 91 74.7
Thecc.09G185900 Theobroma cacao HOM05D004945 ORTHO05D005536 3.1e-33 144.8 87 73.6
COL.COLO4_08559 Corchorus olitorius HOM05D004945 ORTHO05D005536 4.0e-33 144.4 91 71.4
ATR0626G412 Amborella trichopoda HOM05D004945 ORTHO05D005536 5.3e-33 144.1 87 74.7
ClCG06G013580 Citrullus lanatus HOM05D004945 ORTHO05D005536 6.9e-33 143.7 91 70.3
MELO3C017430.2 Cucumis melo HOM05D004945 ORTHO05D005536 6.9e-33 143.7 91 71.4
CsaV3_1G031860 Cucumis sativus L. HOM05D004945 ORTHO05D005536 6.9e-33 143.7 91 72.5
CSS0028266 Camellia sinensis var. sinensis HOM05D004945 ORTHO05D005536 9.0e-33 143.3 91 69.2
Sc15g0001010 Simmondsia chinensis HOM05D004945 ORTHO05D005536 9.0e-33 143.3 89 71.9
DCAR_007670 Daucus carota HOM05D004945 ORTHO05D005536 1.2e-32 142.9 89 70.8
SHI03058 Sapria himalayana HOM05D004945 ORTHO05D005536 2.0e-32 142.1 93 68.8
Gohir.D08G028100 Gossypium hirsutum HOM05D004945 ORTHO05D005536 2.6e-32 141.7 87 71.3
Atru.chr7.757 Acer truncatum HOM05D004945 ORTHO05D005536 3.4e-32 141.4 87 71.3
Atru.chr7.779 Acer truncatum HOM05D004945 ORTHO05D005536 3.4e-32 141.4 87 71.3
Eucgr.C00118 Eucalyptus grandis HOM05D004945 ORTHO05D005536 3.4e-32 141.4 92 68.5
Ciclev10010043m.g Citrus clementina HOM05D004945 ORTHO05D005536 4.5e-32 141.0 87 70.1
Duzib150G1578 Durio zibethinus HOM05D004945 ORTHO05D005536 4.5e-32 141.0 87 71.3
Cc04_g00230 Coffea canephora HOM05D004945 ORTHO05D005536 5.8e-32 140.6 87 71.3
Gohir.A08G017500 Gossypium hirsutum HOM05D004945 ORTHO05D005536 5.8e-32 140.6 87 71.3
Migut.I01191 Erythranthe guttata HOM05D004945 ORTHO05D005536 7.6e-32 140.2 88 73.9
THA.LOC104820006 Tarenaya hassleriana HOM05D004945 ORTHO05D005536 7.6e-32 140.2 91 71.4
TAR636G3350 Trochodendron aralioides HOM05D004945 ORTHO05D005536 7.6e-32 140.2 87 70.1
Gorai.004G025200 Gossypium raimondii HOM05D004945 ORTHO05D005536 9.9e-32 139.8 87 70.1
CANSAT11G0762 Cannabis sativa HOM05D004945 ORTHO05D005536 1.3e-31 139.4 87 70.1
Migut.D00890 Erythranthe guttata HOM05D004945 ORTHO05D005536 2.2e-31 138.7 87 67.8
RcHm_v2.0_Chr4g0399651 Rosa chinensis HOM05D004945 ORTHO05D005536 2.2e-31 138.7 88 72.7
Aqoxy1G01195 Aquilegia oxysepala HOM05D004945 ORTHO05D005536 2.9e-31 138.3 91 72.5
Phvul.007G156600 Phaseolus vulgaris HOM05D004945 ORTHO05D005536 2.9e-31 138.3 87 70.1
unitig_748.g8030 Utricularia gibba HOM05D004945 ORTHO05D005536 3.8e-31 137.9 89 70.8
Psat1g144160 Pisum sativum HOM05D004945 ORTHO05D005536 1.1e-30 136.3 87 67.8
BcaB03g12628 Brassica carinata HOM05D004945 ORTHO05D005536 1.4e-30 136.0 91 70.3
FvH4_4g07310 Fragaria vesca HOM05D004945 ORTHO05D005536 2.5e-30 135.2 88 69.3
unitig_32.g11008 Utricularia gibba HOM05D004945 ORTHO05D005536 5.5e-30 134.0 86 68.6
BcaC01g01207 Brassica carinata HOM05D004945 ORTHO05D005536 7.1e-30 133.7 91 69.2
A08p19460 Brassica napus HOM05D004945 ORTHO05D005536 7.1e-30 133.7 91 69.2
C03p88960 Brassica napus HOM05D004945 ORTHO05D005536 7.1e-30 133.7 91 69.2
BolC3t21206H Brassica oleracea HOM05D004945 ORTHO05D005536 7.1e-30 133.7 91 69.2
BraA08t33908Z Brassica rapa HOM05D004945 ORTHO05D005536 7.1e-30 133.7 91 69.2
Ca_02105_v3 Cicer arietinum L. HOM05D004945 ORTHO05D005536 7.1e-30 133.7 87 69.0
TPR.G7575 Trifolium pratense HOM05D004945 ORTHO05D005536 7.1e-30 133.7 87 70.1
arahy.Tifrunner.gnm1.ann1.M8DR4H Arachis hypogaea HOM05D004945 ORTHO05D005536 9.3e-30 133.3 83 71.1
arahy.Tifrunner.gnm1.ann1.ZYC9F0 Arachis hypogaea HOM05D004945 ORTHO05D005536 9.3e-30 133.3 83 71.1
FAN07G0945 Fragaria x ananassa HOM05D004945 ORTHO05D005536 9.3e-30 133.3 88 69.3
CARHR237930 Cardamine hirsuta HOM05D004945 ORTHO05D005536 1.2e-29 132.9 91 68.1
Glyma.15G165900 Glycine max HOM05D004945 ORTHO05D005536 1.2e-29 132.9 88 68.2
Hma1.2p1_1111F.1_g258380 Hydrangea macrophylla HOM05D004945 ORTHO05D005536 1.6e-29 132.5 89 65.2
Sp7g27810 Schrenkiella parvula HOM05D004945 ORTHO05D005536 1.6e-29 132.5 91 67.0
Glyma.09G059600 Glycine max HOM05D004945 ORTHO05D005536 2.7e-29 131.7 88 69.3
Ah.13g075140 Amaranthus hybridus HOM05D004945 ORTHO05D005536 3.5e-29 131.3 85 71.8
Carub.0007s1064 Capsella rubella HOM05D004945 ORTHO05D005536 7.9e-29 130.2 91 67.0
PSO063G0987 Papaver somniferum HOM05D004945 ORTHO05D005536 7.9e-29 130.2 89 65.2
PSO170G0997 Papaver somniferum HOM05D004945 ORTHO05D005536 7.9e-29 130.2 89 65.2
QL11p013931 Quercus lobata HOM05D004945 ORTHO05D005536 7.9e-29 130.2 90 65.6
THA.LOC104814658 Tarenaya hassleriana HOM05D004945 ORTHO05D005536 7.9e-29 130.2 91 67.0
AL7G22230 Arabidopsis lyrata HOM05D004945 ORTHO05D005536 1.0e-28 129.8 91 67.0
BcaNung00508 Brassica carinata HOM05D004945 ORTHO05D005536 1.0e-28 129.8 91 68.1
Thhalv10026677m.g Eutrema salsugineum HOM05D004945 ORTHO05D005536 1.0e-28 129.8 91 65.9
A03p59370 Brassica napus HOM05D004945 ORTHO05D005536 2.3e-28 128.6 91 67.0
C07p57400 Brassica napus HOM05D004945 ORTHO05D005536 2.3e-28 128.6 91 67.0
BolC7t46209H Brassica oleracea HOM05D004945 ORTHO05D005536 2.3e-28 128.6 91 67.0
BraA03t14994Z Brassica rapa HOM05D004945 ORTHO05D005536 2.3e-28 128.6 91 67.0
CDE04G2745 Ceratophyllum demersum HOM05D004945 ORTHO05D005536 2.3e-28 128.6 84 65.5
Ah.04g153390 Amaranthus hybridus HOM05D004945 ORTHO05D005536 3.9e-28 127.9 85 69.4
AT4G30010 Arabidopsis thaliana HOM05D004945 ORTHO05D005536 3.9e-28 127.9 91 64.8
Lalb_Chr11g0074741 Lupinus albus HOM05D004945 ORTHO05D005536 5.1e-28 127.5 89 64.0
Aqoxy7G02794 Aquilegia oxysepala HOM05D004945 ORTHO05D005536 8.7e-28 126.7 90 65.6
Lj6g0012502 Lotus japonicus HOM05D004945 ORTHO05D005536 8.7e-28 126.7 88 65.9
Medtr2g037990 Medicago truncatula HOM05D004945 ORTHO05D005536 1.1e-27 126.3 87 65.5
EL10Ac3g07227 Beta vulgaris HOM05D004945 ORTHO05D005536 1.9e-27 125.6 85 64.7
Psat1g144120 Pisum sativum HOM05D004945 ORTHO05D005536 2.5e-27 125.2 87 63.2
AUR62018340 Chenopodium quinoa HOM05D004945 ORTHO05D005536 9.6e-27 123.2 85 67.1
AUR62044702 Chenopodium quinoa HOM05D004945 ORTHO05D005536 9.6e-27 123.2 85 67.1
AUR62044703 Chenopodium quinoa HOM05D004945 ORTHO05D005536 9.6e-27 123.2 85 67.1
QL11p014451 Quercus lobata HOM05D004945 ORTHO05D005536 1.3e-26 122.9 90 62.2
AUR62031980 Chenopodium quinoa HOM05D004945 ORTHO05D005536 2.1e-26 122.1 82 67.1
AUR62023991 Chenopodium quinoa HOM05D004945 ORTHO05D005536 2.8e-26 121.7 85 65.9
Aa31LG2G20550 Aethionema arabicum HOM05D004945 ORTHO05D005536 3.7e-26 121.3 87 62.1
MD10G1108200 Malus domestica HOM05D004945 ORTHO05D005536 4.8e-26 120.9 85 65.9
AUR62030327 Chenopodium quinoa HOM05D004945 ORTHO05D005536 6.2e-26 120.6 82 65.9
Lsat_1_v5_gn_1_39460 Lactuca sativa HOM05D004945 ORTHO05D005536 1.1e-25 119.8 91 58.2
THA.LOC104811777 Tarenaya hassleriana HOM05D004945 ORTHO05D005536 1.1e-25 119.8 93 61.3
THA.LOC109116878 Tarenaya hassleriana HOM05D004945 ORTHO05D005536 5.5e-22 107.5 62 79.0
ECA247G2100 Erigeron canadensis HOM05D004945 ORTHO05D005536 6.1e-21 104.0 89 56.2
A01p08110 Brassica napus HOM05D004945 ORTHO05D005536 5.1e-20 100.9 80 56.2
Dinv25512 Davidia involucrata HOM05D004945 ORTHO05D005536 1.9e-19 99.0 66 66.7
Nitab4.5_0006750g0010 Nicotiana tabacum HOM05D004945 ORTHO05D005536 4.3e-19 97.8 57 73.7
Os02g0175800 Oryza sativa ssp. japonica HOM05D004945 ORTHO05D005536 1.6e-18 95.9 80 57.5
BcaB03g15243 Brassica carinata HOM05D004945 ORTHO05D005536 2.2e-18 95.5 75 57.3
HanXRQChr15g0497481 Helianthus annuus HOM05D004945 ORTHO05D005536 7.7e-16 87.0 60 60.0
Nitab4.5_0000617g0120 Nicotiana tabacum HOM05D004945 ORTHO05D005536 7.7e-16 87.0 56 67.9
Nitab4.5_0002354g0060 Nicotiana tabacum HOM05D004945 ORTHO05D005536 5.0e-15 84.3 45 84.4
SMO361G0023 Selaginella moellendorffii HOM05D004945 ORTHO05D005536 3.2e-14 81.6 82 42.7
PGSC0003DMG400028757 Solanum tuberosum HOM05D004945 ORTHO05D005536 3.2e-14 81.6 53 66.0
GSVIVG01010862001 Vitis vinifera HOM05D004945 ORTHO05D005536 1.8e-12 75.9 64 54.7
arahy.Tifrunner.gnm1.ann1.2FH55K Arachis hypogaea HOM05D004945 ORTHO05D005536 5.1e-12 74.3 56 60.7
arahy.Tifrunner.gnm1.ann1.U71V3Q Arachis hypogaea HOM05D004945 ORTHO05D005536 5.1e-12 74.3 56 60.7
AagrBONN_evm.TU.Sc2ySwM_344.4974 Anthoceros agrestis HOM05D004945 ORTHO05D005536 8.8e-12 73.6 82 42.7
Nn8g40786 Nelumbo nucifera HOM05D004945 ORTHO05D005536 9.7e-11 70.1 44 68.2
Oeu001819.1 Olea europaea HOM05D004945 ORTHO05D005536 1.7e-10 69.3 78 46.2
BcaC09g51779 Brassica carinata HOM05D004945 ORTHO05D005536 1.5e-08 62.8 71 43.7
BcaNung06654 Brassica carinata HOM05D004945 ORTHO05D005536 1.5e-08 62.8 71 43.7
CBR_g50842 Chara braunii HOM05D004945 ORTHO05D005536 3.4e-08 61.6 75 41.3
MCO09G227 Micromonas commoda HOM05D004945 ORTHO05D005536 3.4e-08 61.6 82 32.9
Pp3c25_5460 Physcomitrium patens HOM05D004945 ORTHO05D005536 4.5e-08 61.2 80 37.5
Pp3c25_5480 Physcomitrium patens HOM05D004945 ORTHO05D005536 4.5e-08 61.2 80 37.5
Pp3c5_15280 Physcomitrium patens HOM05D004945 ORTHO05D005536 5.9e-08 60.8 82 31.7
Pp3c5_15650 Physcomitrium patens HOM05D004945 ORTHO05D005536 1.3e-07 59.7 90 38.9
Dinv24096 Davidia involucrata HOM05D019947 ORTHO05D005536 2.2e-07 58.9 43 53.5
Dinv44937 Davidia involucrata HOM05D004945 ORTHO05D005536 2.2e-07 58.9 43 53.5
Mapoly0011s0061 Marchantia polymorpha HOM05D004945 ORTHO05D005536 3.2e-06 55.1 81 30.9
AagrBONN_evm.TU.Sc2ySwM_228.1937 Anthoceros agrestis HOM05D004945 ORTHO05D005536 4.2e-06 54.7 75 36.0


User provided reference genes

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