Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc06g062760.3 Solanum lycopersicum HOM05D006233 ORTHO05D007247 4.6e-74 281.2 147 100.0
Sopen06g022210 Solanum pennellii HOM05D006233 ORTHO05D007247 3.7e-71 271.6 147 98.0
PGSC0003DMG400004851 Solanum tuberosum HOM05D006233 ORTHO05D007247 2.6e-69 265.4 147 95.9
Nitab4.5_0005918g0010 Nicotiana tabacum HOM05D006233 ORTHO05D007247 3.2e-59 231.9 146 87.0
Nitab4.5_0000255g0250 Nicotiana tabacum HOM05D006233 ORTHO05D007247 2.7e-58 228.8 146 86.3
Peaxi162Scf00207g01343 Petunia axillaris HOM05D006233 ORTHO05D007247 5.9e-53 211.1 148 83.1
SGA_v2.0_scaffold4G02044 Striga asiatica HOM05D006233 ORTHO05D007247 4.5e-37 158.3 151 59.6
MSTRG.9502 Avicennia marina HOM05D006233 ORTHO05D007247 1.7e-36 156.4 153 58.8
Cpa.g.sc25.68 Carica papaya HOM05D006233 ORTHO05D007247 6.5e-36 154.5 150 62.0
Migut.D00962 Erythranthe guttata HOM05D006233 ORTHO05D007247 8.5e-36 154.1 159 57.9
MD17G1173900 Malus domestica HOM05D006233 ORTHO05D007247 8.5e-36 154.1 148 60.1
Cc04_g01780 Coffea canephora HOM05D006233 ORTHO05D007247 1.5e-35 153.3 149 61.1
Prupe.3G047000 Prunus persica HOM05D006233 ORTHO05D007247 7.2e-35 151.0 149 63.1
Thecc.06G113700 Theobroma cacao HOM05D006233 ORTHO05D007247 7.2e-35 151.0 148 63.5
Atru.chr1.3781 Acer truncatum HOM05D006233 ORTHO05D007247 1.6e-34 149.8 145 63.4
COL.COLO4_38606 Corchorus olitorius HOM05D006233 ORTHO05D007247 2.1e-34 149.4 148 62.8
Dinv04018 Davidia involucrata HOM05D006233 ORTHO05D007247 3.6e-34 148.7 146 62.3
TWI63G1789 Tripterygium wilfordii HOM05D006233 ORTHO05D007247 3.6e-34 148.7 148 62.2
Actinidia26050 Actinidia chinensis HOM05D006233 ORTHO05D007247 4.7e-34 148.3 149 59.7
arahy.Tifrunner.gnm1.ann1.LDN3BT Arachis hypogaea HOM05D006233 ORTHO05D007247 4.7e-34 148.3 144 59.0
MD09G1191200 Malus domestica HOM05D006233 ORTHO05D007247 8.0e-34 147.5 149 60.4
TWI38G0279 Tripterygium wilfordii HOM05D006233 ORTHO05D007247 8.0e-34 147.5 148 60.8
Cfa003566 Carpinus fangiana HOM05D006233 ORTHO05D007247 1.0e-33 147.1 149 61.1
CiPaw.02G138900 Carya illinoinensis HOM05D006233 ORTHO05D007247 1.8e-33 146.4 149 61.1
Lj5A43T71 Lonicera japonica HOM05D006233 ORTHO05D007247 2.3e-33 146.0 159 58.5
Dinv37902 Davidia involucrata HOM05D006233 ORTHO05D007247 5.2e-33 144.8 143 60.8
CANSAT56G1839 Cannabis sativa HOM05D006233 ORTHO05D007247 8.8e-33 144.1 151 58.3
Actinidia39105 Actinidia chinensis HOM05D006233 ORTHO05D007247 2.0e-32 142.9 152 57.9
Gohir.A06G191200 Gossypium hirsutum HOM05D006233 ORTHO05D007247 2.0e-32 142.9 150 58.0
Gorai.010G232600 Gossypium raimondii HOM05D006233 ORTHO05D007247 3.3e-32 142.1 150 60.0
Gohir.D06G199600 Gossypium hirsutum HOM05D006233 ORTHO05D007247 4.4e-32 141.7 155 57.4
HanXRQChr10g0312401 Helianthus annuus HOM05D006233 ORTHO05D007247 9.7e-32 140.6 151 60.9
Manes.11G024800 Manihot esculenta HOM05D006233 ORTHO05D007247 1.3e-31 140.2 153 59.5
FvH4_6g33800 Fragaria vesca HOM05D006233 ORTHO05D007247 2.2e-31 139.4 151 55.6
FAN14G4045 Fragaria x ananassa HOM05D006233 ORTHO05D007247 2.2e-31 139.4 151 55.6
FAN05G2224 Fragaria x ananassa HOM05D006233 ORTHO05D007247 2.8e-31 139.0 151 55.6
RcHm_v2.0_Chr2g0143671 Rosa chinensis HOM05D006233 ORTHO05D007247 2.8e-31 139.0 151 58.3
Eucgr.F03142 Eucalyptus grandis HOM05D006233 ORTHO05D007247 6.3e-31 137.9 149 59.1
Haze_15979 Corylus avellana HOM05D006233 ORTHO05D007247 1.4e-30 136.7 171 51.5
FAN09G3309 Fragaria x ananassa HOM05D006233 ORTHO05D007247 1.4e-30 136.7 151 55.0
CiPaw.01G223500 Carya illinoinensis HOM05D006233 ORTHO05D007247 1.8e-30 136.3 154 55.8
AT3G13882 Arabidopsis thaliana HOM05D006233 ORTHO05D007247 2.4e-30 136.0 152 54.6
Sed0001061 Sechium edule HOM05D006233 ORTHO05D007247 2.4e-30 136.0 154 56.5
ECA234G2580 Erigeron canadensis HOM05D006233 ORTHO05D007247 4.1e-30 135.2 152 58.6
Manes.04G140700 Manihot esculenta HOM05D006233 ORTHO05D007247 4.1e-30 135.2 150 58.7
AL3G26050 Arabidopsis lyrata HOM05D006233 ORTHO05D007247 5.3e-30 134.8 152 54.6
Ciclev10026736m.g Citrus clementina HOM05D006233 ORTHO05D007247 1.2e-29 133.7 146 56.8
Medtr8g017420 Medicago truncatula HOM05D006233 ORTHO05D007247 1.2e-29 133.7 145 55.9
PGR119G1625 Punica granatum HOM05D006233 ORTHO05D007247 2.7e-29 132.5 152 53.3
Ca_23330_v3 Cicer arietinum L. HOM05D006233 ORTHO05D007247 4.5e-29 131.7 147 55.1
GSVIVG01016799001 Vitis vinifera HOM05D006233 ORTHO05D007247 4.5e-29 131.7 151 55.6
Carub.0003s1344 Capsella rubella HOM05D006233 ORTHO05D007247 5.9e-29 131.3 152 53.9
CsaV3_3G043640 Cucumis sativus L. HOM05D006233 ORTHO05D007247 5.9e-29 131.3 152 55.9
Hma1.2p1_1128F.1_g259780 Hydrangea macrophylla HOM05D006233 ORTHO05D007247 7.7e-29 131.0 149 57.0
Lj5A42T58 Lonicera japonica HOM05D006233 ORTHO05D007247 7.7e-29 131.0 122 61.5
Potri.003G041100 Populus trichocarpa HOM05D006233 ORTHO05D007247 7.7e-29 131.0 144 55.6
Aa31LG8G1060 Aethionema arabicum HOM05D006233 ORTHO05D007247 1.7e-28 129.8 151 53.6
A03p38490 Brassica napus HOM05D006233 ORTHO05D007247 1.7e-28 129.8 152 52.6
BolC3t16928H Brassica oleracea HOM05D006233 ORTHO05D007247 1.7e-28 129.8 152 52.6
BcaB04g18809 Brassica carinata HOM05D006233 ORTHO05D007247 2.9e-28 129.0 153 52.9
CARHR088680 Cardamine hirsuta HOM05D006233 ORTHO05D007247 3.8e-28 128.6 153 52.3
MELO3C013069.2 Cucumis melo HOM05D006233 ORTHO05D007247 3.8e-28 128.6 152 55.3
Nn6g35511 Nelumbo nucifera HOM05D006233 ORTHO05D007247 3.8e-28 128.6 145 54.5
C03p46650 Brassica napus HOM05D006233 ORTHO05D007247 5.0e-28 128.3 152 52.0
BcaC01g03969 Brassica carinata HOM05D006233 ORTHO05D007247 8.5e-28 127.5 152 52.0
Sp3g12110 Schrenkiella parvula HOM05D006233 ORTHO05D007247 8.5e-28 127.5 152 52.6
BcaC05g29149 Brassica carinata HOM05D006233 ORTHO05D007247 1.1e-27 127.1 153 54.9
C05p53920 Brassica napus HOM05D006233 ORTHO05D007247 1.1e-27 127.1 153 54.9
Lalb_Chr25g0280771 Lupinus albus HOM05D006233 ORTHO05D007247 1.1e-27 127.1 145 56.6
Hund20828 Selenicereus undatus HOM05D006233 ORTHO05D007247 3.2e-27 125.6 165 50.3
BcaB06g25428 Brassica carinata HOM05D006233 ORTHO05D007247 7.2e-27 124.4 153 52.9
Thhalv10021711m.g Eutrema salsugineum HOM05D006233 ORTHO05D007247 7.2e-27 124.4 153 52.9
PSO210G1065 Papaver somniferum HOM05D006233 ORTHO05D007247 7.2e-27 124.4 149 53.7
PSO210G5036 Papaver somniferum HOM05D006233 ORTHO05D007247 7.2e-27 124.4 145 52.4
AUR62009846 Chenopodium quinoa HOM05D006233 ORTHO05D007247 9.4e-27 124.0 158 48.7
CDE03G0127 Ceratophyllum demersum HOM05D006233 ORTHO05D007247 1.2e-26 123.6 146 52.7
THA.LOC104822640 Tarenaya hassleriana HOM05D006233 ORTHO05D007247 1.6e-26 123.2 105 67.6
AUR62038159 Chenopodium quinoa HOM05D006233 ORTHO05D007247 2.1e-26 122.9 161 49.7
BraA03t13001Z Brassica rapa HOM05D006233 ORTHO05D007247 2.7e-26 122.5 153 51.6
Aqoxy7G01184 Aquilegia oxysepala HOM05D006233 ORTHO05D007247 3.6e-26 122.1 146 53.4
TPR.G3185 Trifolium pratense HOM05D006233 ORTHO05D007247 3.6e-26 122.1 146 54.8
BraA03t12999Z Brassica rapa HOM05D006233 ORTHO05D007247 4.7e-26 121.7 156 50.6
HanXRQChr04g0094941 Helianthus annuus HOM05D006233 ORTHO05D007247 4.7e-26 121.7 145 56.6
MBI04_g36913_MAGBIO Magnolia biondii HOM05D006233 ORTHO05D007247 6.1e-26 121.3 151 51.0
Psat4g187760 Pisum sativum HOM05D006233 ORTHO05D007247 6.1e-26 121.3 136 53.7
EL10Ac7g16362 Beta vulgaris HOM05D006233 ORTHO05D007247 1.8e-25 119.8 161 47.2
ClCG07G013950 Citrullus lanatus HOM05D006233 ORTHO05D007247 2.3e-25 119.4 146 54.8
Lj5g0016703 Lotus japonicus HOM05D006233 ORTHO05D007247 2.3e-25 119.4 158 49.4
VMungo0331G0931 Vigna mungo HOM05D006233 ORTHO05D007247 2.3e-25 119.4 145 55.2
Phvul.010G137600 Phaseolus vulgaris HOM05D006233 ORTHO05D007247 4.0e-25 118.6 145 54.5
Glyma.08G191600 Glycine max HOM05D006233 ORTHO05D007247 7.5e-24 114.4 122 58.2
SGA_v2.0_scaffold68G22913 Striga asiatica HOM05D006233 ORTHO05D007247 2.2e-23 112.8 126 51.6
Glyma.07G008600 Glycine max HOM05D006233 ORTHO05D007247 6.3e-23 111.3 141 56.7
arahy.Tifrunner.gnm1.ann1.9P6A99 Arachis hypogaea HOM05D006233 ORTHO05D007247 1.4e-22 110.2 120 50.8
Actinidia32155 Actinidia chinensis HOM05D006233 ORTHO05D007247 3.1e-22 109.0 149 53.0
BolC5t34058H Brassica oleracea HOM05D006233 ORTHO05D007247 1.6e-21 106.7 157 47.8
Rhsim08G0234900 Rhododendron simsii HOM05D006233 ORTHO05D007247 3.5e-21 105.5 130 49.2
FAN21G3416 Fragaria x ananassa HOM05D006233 ORTHO05D007247 4.5e-21 105.1 129 51.9
Duzib192G0098 Durio zibethinus HOM05D006233 ORTHO05D007247 1.0e-20 104.0 124 53.2
Lsat_1_v5_gn_5_135041 Lactuca sativa HOM05D006233 ORTHO05D007247 1.3e-20 103.6 122 54.1
unitig_8.g4463 Utricularia gibba HOM05D006233 ORTHO05D007247 3.8e-20 102.1 122 46.7
ATR0789G010 Amborella trichopoda HOM05D006233 ORTHO05D007247 6.6e-20 101.3 92 59.8
Nn8g38812 Nelumbo nucifera HOM05D006233 ORTHO05D007247 1.5e-19 100.1 134 47.8
Zm00001eb160070 Zea mays HOM05D006233 ORTHO05D007247 1.9e-19 99.8 149 44.3
Os01g0571200 Oryza sativa ssp. japonica HOM05D006233 ORTHO05D007247 1.8e-17 93.2 149 44.3
FAN11G2894 Fragaria x ananassa HOM05D000283 ORTHO05D007247 4.4e-16 88.6 133 46.6
A03p38520 Brassica napus HOM05D006233 ORTHO05D007247 5.9e-13 78.2 128 43.8
CDE06G1672 Ceratophyllum demersum HOM05D006233 ORTHO05D007247 3.8e-12 75.5 119 44.5
QL05p010144 Quercus lobata HOM05D006233 ORTHO05D007247 2.5e-11 72.8 102 43.1
HPP92_007656 Vanilla planifolia HOM05D006233 ORTHO05D007247 5.6e-11 71.6 130 40.0
BraA05t22362Z Brassica rapa HOM05D006233 ORTHO05D007247 3.6e-10 68.9 177 38.4
BcaC05g29150 Brassica carinata HOM05D006233 ORTHO05D007247 4.7e-10 68.6 146 42.5
Pp3c4_29560 Physcomitrium patens HOM05D006233 ORTHO05D007247 6.1e-10 68.2 155 34.2
Mapoly0016s0011 Marchantia polymorpha HOM05D006233 ORTHO05D007247 1.4e-09 67.0 74 52.7
QL05p010226 Quercus lobata HOM05D006233 ORTHO05D007247 1.8e-09 66.6 98 45.9
AagrBONN_evm.TU.Sc2ySwM_368.223 Anthoceros agrestis HOM05D003143 ORTHO05D003628 2.3e-09 66.2 56 57.1
Zm00001eb357240 Zea mays HOM05D006233 ORTHO05D007247 2.3e-09 66.2 127 37.0
Nn1g01194 Nelumbo nucifera HOM05D006233 ORTHO05D007247 4.0e-09 65.5 49 69.4
CSS0050466 Camellia sinensis var. sinensis HOM05D006233 ORTHO05D007247 2.0e-08 63.2 94 44.7
Sed0004594 Sechium edule HOM05D006233 ORTHO05D007247 1.1e-06 57.4 96 42.7
Ca_29232_v3 Cicer arietinum L. HOM05D006233 ORTHO05D007247 1.4e-06 57.0 42 66.7
MCO16G417 Micromonas commoda HOM05D003208 ORTHO05D004103 2.4e-06 56.2 56 51.8
CBR_g8600 Chara braunii HOM05D006233 ORTHO05D007247 5.4e-06 55.1 42 61.9
SalBow7G1471 Salvia bowleyana HOM05D006233 ORTHO05D007247 5.4e-06 55.1 94 41.5
CAN.G1407.1 Capsicum annuum HOM05D004684 ORTHO05D016153 7.0e-06 54.7 33 78.8


User provided reference genes

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