Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc06g062700.3 Solanum lycopersicum HOM05D007444 ORTHO05D009359 3.6e-88 328.2 160 100.0
Sopen06g022180 Solanum pennellii HOM05D007444 ORTHO05D009359 4.0e-79 298.1 151 98.0
PGSC0003DMG400004847 Solanum tuberosum HOM05D007444 ORTHO05D009359 1.6e-75 286.2 151 93.4
Nitab4.5_0000255g0240 Nicotiana tabacum HOM05D007444 ORTHO05D009359 1.6e-67 259.6 156 82.1
Nitab4.5_0005918g0020 Nicotiana tabacum HOM05D007444 ORTHO05D009359 1.3e-66 256.5 156 81.4
CAN.G825.32 Capsicum annuum HOM05D007444 ORTHO05D009359 4.4e-54 214.9 157 70.1
Peaxi162Scf00207g00133 Petunia axillaris HOM05D007444 ORTHO05D009359 2.3e-50 202.6 156 66.0
Lj9A520T86 Lonicera japonica HOM05D007444 ORTHO05D009359 3.5e-43 178.7 154 59.7
Dinv37906 Davidia involucrata HOM05D007444 ORTHO05D009359 1.9e-41 172.9 160 57.5
Oeu039953.1 Olea europaea HOM05D007444 ORTHO05D009359 3.1e-39 165.6 161 54.7
Actinidia09035 Actinidia chinensis HOM05D007444 ORTHO05D009359 4.2e-36 155.2 157 49.7
CSS0030092 Camellia sinensis var. sinensis HOM05D007444 ORTHO05D009359 1.3e-34 150.2 159 50.3
Cc04_g01830 Coffea canephora HOM05D007444 ORTHO05D009359 1.9e-33 146.4 153 48.4
Hund20831 Selenicereus undatus HOM05D007444 ORTHO05D009359 7.3e-33 144.4 166 48.8
Ah.08g216430 Amaranthus hybridus HOM05D007444 ORTHO05D009359 2.1e-32 142.9 163 47.9
Rhsim12G0206600 Rhododendron simsii HOM05D007444 ORTHO05D009359 1.4e-31 140.2 155 51.0
DCAR_022704 Daucus carota HOM05D007444 ORTHO05D009359 4.0e-31 138.7 151 46.4
AUR62038156 Chenopodium quinoa HOM05D007444 ORTHO05D009359 5.3e-31 138.3 161 47.2
vmacro17027 Vaccinium macrocarpon HOM05D007444 ORTHO05D009359 1.2e-30 137.1 155 49.7
AUR62009843 Chenopodium quinoa HOM05D007444 ORTHO05D009359 4.5e-30 135.2 162 46.9
Prupe.3G047900 Prunus persica HOM05D007444 ORTHO05D009359 5.8e-30 134.8 152 44.7
EL10Ac7g16359 Beta vulgaris HOM05D007444 ORTHO05D009359 9.9e-30 134.0 156 44.9
MSTRG.4771 Avicennia marina HOM05D007444 ORTHO05D009359 2.2e-29 132.9 152 48.7
RcHm_v2.0_Chr2g0143591 Rosa chinensis HOM05D007444 ORTHO05D009359 8.4e-29 131.0 152 42.8
TAR383G0129 Trochodendron aralioides HOM05D007444 ORTHO05D009359 1.1e-28 130.6 178 42.1
PSO017G2704 Papaver somniferum HOM05D007444 ORTHO05D009359 2.4e-28 129.4 163 46.0
Migut.D00964 Erythranthe guttata HOM05D007444 ORTHO05D009359 7.1e-28 127.9 151 47.0
GSVIVG01016873001 Vitis vinifera HOM05D007444 ORTHO05D009359 7.1e-28 127.9 108 52.8
BcaB06g25436 Brassica carinata HOM05D007444 ORTHO05D009359 9.3e-28 127.5 111 54.1
C05p54050 Brassica napus HOM05D007444 ORTHO05D009359 9.3e-28 127.5 111 54.1
BolC5t34070H Brassica oleracea HOM05D007444 ORTHO05D009359 9.3e-28 127.5 111 54.1
PSO478G1587 Papaver somniferum HOM05D007444 ORTHO05D009359 9.3e-28 127.5 142 48.6
SGA_v2.0_scaffold68G22914 Striga asiatica HOM05D007444 ORTHO05D009359 9.3e-28 127.5 154 43.5
FAN09G3948 Fragaria x ananassa HOM05D007444 ORTHO05D009359 1.2e-27 127.1 152 40.8
Duzib235G0092 Durio zibethinus HOM05D007444 ORTHO05D009359 1.6e-27 126.7 155 43.9
Gohir.D06G198800 Gossypium hirsutum HOM05D007444 ORTHO05D009359 2.1e-27 126.3 156 41.7
FvH4_6g33680 Fragaria vesca HOM05D007444 ORTHO05D009359 2.7e-27 125.9 152 41.4
FAN14G4700 Fragaria x ananassa HOM05D007444 ORTHO05D009359 4.6e-27 125.2 152 41.4
Aqoxy7G01186 Aquilegia oxysepala HOM05D007444 ORTHO05D009359 7.9e-27 124.4 164 42.1
A05p35640 Brassica napus HOM05D007444 ORTHO05D009359 1.3e-26 123.6 111 53.2
Lsat_1_v5_gn_1_35640 Lactuca sativa HOM05D007444 ORTHO05D009359 1.3e-26 123.6 158 43.0
BraA05t22371Z Brassica rapa HOM05D007444 ORTHO05D009359 1.8e-26 123.2 111 52.3
Gohir.A06G190400 Gossypium hirsutum HOM05D007444 ORTHO05D009359 1.8e-26 123.2 156 41.0
Ca_01210_v3 Cicer arietinum L. HOM05D007444 ORTHO05D009359 5.1e-26 121.7 107 51.4
Gorai.010G231700 Gossypium raimondii HOM05D007444 ORTHO05D009359 6.7e-26 121.3 156 40.4
THA.LOC104815643 Tarenaya hassleriana HOM05D007444 ORTHO05D009359 6.7e-26 121.3 155 45.2
COL.COLO4_30661 Corchorus olitorius HOM05D007444 ORTHO05D009359 1.1e-25 120.6 155 40.0
Aa31LG8G960 Aethionema arabicum HOM05D007444 ORTHO05D009359 1.5e-25 120.2 152 44.1
MD09G1191700 Malus domestica HOM05D007444 ORTHO05D009359 2.5e-25 119.4 153 42.5
Carub.0003s1330 Capsella rubella HOM05D007444 ORTHO05D009359 5.6e-25 118.2 156 42.3
CARHR088510 Cardamine hirsuta HOM05D007444 ORTHO05D009359 7.4e-25 117.9 125 48.8
QL05p011652 Quercus lobata HOM05D007444 ORTHO05D009359 7.4e-25 117.9 160 44.4
TPR.G6573 Trifolium pratense HOM05D007444 ORTHO05D009359 7.4e-25 117.9 152 40.8
CiPaw.02G139200 Carya illinoinensis HOM05D007444 ORTHO05D009359 9.6e-25 117.5 157 44.6
Medtr2g099820 Medicago truncatula HOM05D007444 ORTHO05D009359 9.6e-25 117.5 151 41.7
Haze_15975 Corylus avellana HOM05D007444 ORTHO05D009359 1.3e-24 117.1 155 43.2
Eucgr.F03140 Eucalyptus grandis HOM05D007444 ORTHO05D009359 1.3e-24 117.1 157 40.8
Sp3g11980 Schrenkiella parvula HOM05D007444 ORTHO05D009359 1.6e-24 116.7 127 45.7
Psat5g292040 Pisum sativum HOM05D007444 ORTHO05D009359 2.8e-24 115.9 151 40.4
SalBow7G2527 Salvia bowleyana HOM05D007444 ORTHO05D009359 3.7e-24 115.5 153 38.6
Sed0011511 Sechium edule HOM05D007444 ORTHO05D009359 3.7e-24 115.5 154 40.9
PGR119G0376 Punica granatum HOM05D007444 ORTHO05D009359 6.2e-24 114.8 134 42.5
Thhalv10021210m.g Eutrema salsugineum HOM05D007444 ORTHO05D009359 1.4e-23 113.6 153 42.5
Sc12g0010310 Simmondsia chinensis HOM05D007444 ORTHO05D009359 3.1e-23 112.5 151 43.7
Cfa003571 Carpinus fangiana HOM05D007444 ORTHO05D009359 6.9e-23 111.3 155 41.3
Manes.11G025100 Manihot esculenta HOM05D007444 ORTHO05D009359 6.9e-23 111.3 154 43.5
Ciclev10026127m.g Citrus clementina HOM05D007444 ORTHO05D009359 1.2e-22 110.5 155 41.9
CANSAT56G0761 Cannabis sativa HOM05D007444 ORTHO05D009359 1.5e-22 110.2 154 40.9
AT3G13780 Arabidopsis thaliana HOM05D007444 ORTHO05D009359 2.6e-22 109.4 143 42.7
Lalb_Chr14g0372751 Lupinus albus HOM05D007444 ORTHO05D009359 2.6e-22 109.4 115 49.6
QL05p011272 Quercus lobata HOM05D007444 ORTHO05D009359 5.8e-22 108.2 159 42.1
AL3G25850 Arabidopsis lyrata HOM05D007444 ORTHO05D009359 1.3e-21 107.1 135 44.4
Phvul.005G158200 Phaseolus vulgaris HOM05D007444 ORTHO05D009359 3.8e-21 105.5 155 38.1
TWI36G0277 Tripterygium wilfordii HOM05D007444 ORTHO05D009359 4.9e-21 105.1 157 40.1
TWI36G1725 Tripterygium wilfordii HOM05D007444 ORTHO05D009359 4.9e-21 105.1 157 40.1
Glyma.15G024900 Glycine max HOM05D007444 ORTHO05D009359 8.4e-21 104.4 108 46.3
QL05p010974 Quercus lobata HOM05D007444 ORTHO05D009359 1.9e-20 103.2 159 40.3
MBI01_g20340_MAGBIO Magnolia biondii HOM05D007444 ORTHO05D009359 3.2e-20 102.4 112 47.3
CDE05G3416 Ceratophyllum demersum HOM05D007444 ORTHO05D009359 1.2e-19 100.5 172 35.5
MELO3C013088.2 Cucumis melo HOM05D007444 ORTHO05D009359 3.0e-18 95.9 154 40.3
HanXRQChr02g0031731 Helianthus annuus HOM05D007444 ORTHO05D009359 6.7e-18 94.7 119 40.3
arahy.Tifrunner.gnm1.ann1.F397YD Arachis hypogaea HOM05D007444 ORTHO05D009359 1.5e-17 93.6 159 37.1
arahy.Tifrunner.gnm1.ann1.ZV36U3 Arachis hypogaea HOM05D007444 ORTHO05D009359 2.5e-17 92.8 155 38.1
ClCG07G013830 Citrullus lanatus HOM05D007444 ORTHO05D009359 7.4e-17 91.3 154 37.7
CsaV3_3G043760 Cucumis sativus L. HOM05D007444 ORTHO05D009359 1.6e-16 90.1 154 36.4
Sabra01G0143200 Salix brachista HOM05D007444 ORTHO05D009359 1.6e-16 90.1 152 37.5
Lj3g0023369 Lotus japonicus HOM05D007444 ORTHO05D009359 2.1e-16 89.7 153 35.9
Potri.001G196700 Populus trichocarpa HOM05D007444 ORTHO05D009359 2.1e-16 89.7 106 44.3
ATR0109G024 Amborella trichopoda HOM05D007444 ORTHO05D009359 4.6e-11 72.0 134 29.9
Pp3c14_13390 Physcomitrium patens HOM05D007444 ORTHO05D009359 6.1e-11 71.6 112 35.7
HPP92_005228 Vanilla planifolia HOM05D007444 ORTHO05D009359 1.1e-09 67.4 127 37.0
Cpa.g.sc25.50 Carica papaya HOM05D007444 ORTHO05D009359 1.6e-08 63.5 72 43.1
Hma1.2p1_0496F.1_g165930 Hydrangea macrophylla HOM05D007444 ORTHO05D009359 3.7e-08 62.4 74 40.5
Zm00001eb277400 Zea mays HOM05D007444 ORTHO05D009359 2.6e-06 56.2 119 35.3


User provided reference genes

Program Settings