Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc06g060860.2 Solanum lycopersicum HOM05D007047 ORTHO05D009177 1.0e-290 1002.7 499 100.0
Sopen06g021010 Solanum pennellii HOM05D007047 ORTHO05D009177 1.5e-270 935.6 493 95.1
PGSC0003DMG400024159 Solanum tuberosum HOM05D007047 ORTHO05D009177 3.5e-251 871.3 496 88.9
Nitab4.5_0000506g0030 Nicotiana tabacum HOM05D007047 ORTHO05D009177 1.9e-188 662.9 501 71.7
Nitab4.5_0006375g0010 Nicotiana tabacum HOM05D007047 ORTHO05D009177 1.9e-167 593.2 486 67.3
CAN.G62.14 Capsicum annuum HOM05D007047 ORTHO05D009177 1.7e-157 560.1 416 71.9
Peaxi162Scf00190g01213 Petunia axillaris HOM05D007047 ORTHO05D009177 8.0e-102 375.2 488 49.0
Dinv28849 Davidia involucrata HOM05D007047 ORTHO05D006202 8.4e-43 179.1 484 35.3
Oeu045687.1 Olea europaea HOM05D007047 ORTHO05D009177 1.2e-33 148.7 535 30.3
QL12p009685 Quercus lobata HOM05D007047 ORTHO05D009177 1.6e-33 148.3 549 28.1
Thecc.03G244500 Theobroma cacao HOM05D007047 ORTHO05D009177 5.1e-32 143.3 539 28.8
QL12p009257 Quercus lobata HOM05D007047 ORTHO05D009177 1.1e-31 142.1 551 27.6
COL.COLO4_10022 Corchorus olitorius HOM05D007047 ORTHO05D009177 1.5e-31 141.7 533 29.5
PGR031G1177 Punica granatum HOM05D007047 ORTHO05D009177 4.3e-31 140.2 528 26.9
Potri.003G080700 Populus trichocarpa HOM05D007047 ORTHO05D009177 7.4e-31 139.4 547 29.1
Hma1.2p1_0821F.1_g224180 Hydrangea macrophylla HOM05D007047 ORTHO05D009177 9.6e-31 139.0 530 29.6
Oeu045675.1 Olea europaea HOM05D007047 ORTHO05D009177 6.9e-29 132.9 327 33.3
Dinv39189 Davidia involucrata HOM05D000549 ORTHO05D006202 1.2e-28 132.1 235 41.7
Actinidia31505 Actinidia chinensis HOM05D007047 ORTHO05D006202 4.9e-27 126.7 532 27.8
Atru.chr9.1243 Acer truncatum HOM05D007047 ORTHO05D009177 8.4e-27 125.9 525 28.2
SGA_v2.0_scaffold104G30204 Striga asiatica HOM05D007047 ORTHO05D009177 1.9e-26 124.8 528 29.5
Manes.02G042900 Manihot esculenta HOM05D007047 ORTHO05D009177 3.2e-26 124.0 553 27.7
Sabra03G0052300 Salix brachista HOM05D007047 ORTHO05D009177 9.3e-26 122.5 557 27.3
FvH4_2g33151 Fragaria vesca HOM05D007047 ORTHO05D009177 1.2e-25 122.1 543 26.0
FAN24G2075 Fragaria x ananassa HOM05D007047 ORTHO05D009177 6.0e-25 119.8 554 26.2
CSS0008245 Camellia sinensis var. sinensis HOM05D007047 ORTHO05D009177 1.3e-24 118.6 521 28.4
TWI60G0889 Tripterygium wilfordii HOM05D007047 ORTHO05D009177 5.1e-24 116.7 542 28.4
SalBow6G1440 Salvia bowleyana HOM05D007047 ORTHO05D009177 1.5e-23 115.2 523 26.6
TAR375G0331 Trochodendron aralioides HOM05D007047 ORTHO05D009177 1.9e-23 114.8 338 31.7
CiPaw.12G048400 Carya illinoinensis HOM05D007047 ORTHO05D009177 3.3e-23 114.0 520 28.1
Prupe.4G179300 Prunus persica HOM05D007047 ORTHO05D009177 4.3e-23 113.6 534 27.9
CAN.G62.13 Capsicum annuum HOM05D007047 ORTHO05D009177 5.7e-23 113.2 94 64.9
GSVIVG01004793001 Vitis vinifera HOM05D000549 ORTHO05D006202 7.4e-23 112.8 325 30.8
FAN08G2081 Fragaria x ananassa HOM05D007047 ORTHO05D009177 2.1e-22 111.3 565 25.1
MD06G1050900 Malus domestica HOM05D007047 ORTHO05D009177 2.8e-22 110.9 546 25.6
VMungo1215G0554 Vigna mungo HOM05D002164 ORTHO05D002267 1.4e-21 108.6 509 28.3
Glyma.01G206100 Glycine max HOM05D007047 ORTHO05D009177 1.8e-21 108.2 504 26.4
Carub.0007s2455 Capsella rubella HOM05D007047 ORTHO05D009177 2.4e-21 107.8 505 26.1
FAN04G0327 Fragaria x ananassa HOM05D007047 ORTHO05D009177 6.9e-21 106.3 547 26.0
PSO063G2347 Papaver somniferum HOM05D007047 ORTHO05D009177 9.0e-21 105.9 509 26.7
MSTRG.25515 Avicennia marina HOM05D007047 ORTHO05D009177 1.5e-20 105.1 517 25.1
DCAR_000643 Daucus carota HOM05D007047 ORTHO05D009177 2.0e-20 104.8 572 25.7
RcHm_v2.0_Chr7g0204751 Rosa chinensis HOM05D007047 ORTHO05D009177 2.6e-20 104.4 559 25.8
CANSAT21G2499 Cannabis sativa HOM05D007047 ORTHO05D009177 1.7e-19 101.7 520 26.2
Cc08_g11870 Coffea canephora HOM05D000549 ORTHO05D006202 5.0e-19 100.1 154 41.6
Duzib205G0846 Durio zibethinus HOM05D007047 ORTHO05D009177 6.5e-19 99.8 472 26.7
Ciclev10024423m.g Citrus clementina HOM05D007047 ORTHO05D009177 1.9e-18 98.2 533 26.1
Haze_07962 Corylus avellana HOM05D007047 ORTHO05D009177 2.5e-18 97.8 427 27.4
Nn6g33825 Nelumbo nucifera HOM05D007047 ORTHO05D009177 2.5e-18 97.8 343 29.7
Migut.A01028 Erythranthe guttata HOM05D007047 ORTHO05D009177 4.2e-18 97.1 508 26.8
Rhsim07G0117500 Rhododendron simsii HOM05D007047 ORTHO05D009177 9.3e-18 95.9 338 32.0
FAN27G3081 Fragaria x ananassa HOM05D007047 ORTHO05D009177 2.1e-17 94.7 322 27.0
Phvul.002G000400 Phaseolus vulgaris HOM05D007047 ORTHO05D009177 2.1e-17 94.7 419 28.2
TPR.G17974 Trifolium pratense HOM05D007047 ORTHO05D009177 2.1e-17 94.7 504 26.4
MELO3C013912.2 Cucumis melo HOM05D007047 ORTHO05D009177 2.7e-17 94.4 426 28.4
Hund11335 Selenicereus undatus HOM05D007047 ORTHO05D009177 6.1e-17 93.2 446 26.0
AL7G37840 Arabidopsis lyrata HOM05D007047 ORTHO05D009177 1.0e-16 92.4 502 24.3
Gorai.004G194800 Gossypium raimondii HOM05D007047 ORTHO05D009177 1.3e-16 92.0 511 26.0
Medtr5g013140 Medicago truncatula HOM05D007047 ORTHO05D009177 1.8e-16 91.7 505 25.1
ClCG10G002400 Citrullus lanatus HOM05D007047 ORTHO05D009177 3.0e-16 90.9 435 27.6
Gohir.A08G166600 Gossypium hirsutum HOM05D007047 ORTHO05D009177 5.1e-16 90.1 505 25.5
AUR62006813 Chenopodium quinoa HOM05D007047 ORTHO05D009177 6.7e-16 89.7 560 26.1
CsaV3_3G002430 Cucumis sativus L. HOM05D007047 ORTHO05D009177 1.5e-15 88.6 441 28.1
Psat2g177160 Pisum sativum HOM05D007047 ORTHO05D009177 1.5e-15 88.6 420 27.9
Ciclev10019636m.g Citrus clementina HOM05D000549 ORTHO05D006202 1.3e-14 85.5 251 29.1
Lj2g0019775 Lotus japonicus HOM05D007047 ORTHO05D009177 1.3e-14 85.5 334 29.9
Ah.10g026860 Amaranthus hybridus HOM05D007047 ORTHO05D009177 2.8e-14 84.3 427 25.5
FAN20G0731 Fragaria x ananassa HOM05D007047 ORTHO05D009177 3.7e-14 84.0 335 28.4
Rhsim07G0117200 Rhododendron simsii HOM05D007047 ORTHO05D009177 3.7e-14 84.0 431 28.1
Ca_24599_v3 Cicer arietinum L. HOM05D007047 ORTHO05D009177 4.8e-14 83.6 415 28.7
THA.LOC104807915 Tarenaya hassleriana HOM05D007047 ORTHO05D009177 4.8e-14 83.6 534 25.7
Eucgr.D02116 Eucalyptus grandis HOM05D007047 ORTHO05D009177 6.3e-14 83.2 316 27.8
A08p12720 Brassica napus HOM05D007047 ORTHO05D006202 8.2e-14 82.8 508 24.8
BraA08t33261Z Brassica rapa HOM05D007047 ORTHO05D009177 8.2e-14 82.8 507 25.0
CARHR223430 Cardamine hirsuta HOM05D007047 ORTHO05D009177 1.8e-13 81.6 523 25.0
Sp7g17290 Schrenkiella parvula HOM05D007047 ORTHO05D009177 5.3e-13 80.1 525 24.2
AT4G16807 Arabidopsis thaliana HOM05D007047 ORTHO05D009177 9.0e-13 79.3 499 23.2
AUR62000471 Chenopodium quinoa HOM05D007047 ORTHO05D009177 9.0e-13 79.3 527 26.4
BcaB04g18396 Brassica carinata HOM05D007047 ORTHO05D006202 4.5e-12 77.0 508 25.0
Cpa.g.sc559.1 Carica papaya HOM05D007047 ORTHO05D009177 5.9e-12 76.6 330 26.7
BolC8t48412H Brassica oleracea HOM05D007047 ORTHO05D009177 2.9e-11 74.3 525 24.6
Sed0008627 Sechium edule HOM05D007047 ORTHO05D009177 6.5e-11 73.2 329 25.8
Aqoxy3G02722 Aquilegia oxysepala HOM05D007047 ORTHO05D009177 1.1e-10 72.4 420 24.0
BcaC07g38023 Brassica carinata HOM05D007047 ORTHO05D009177 1.4e-10 72.0 525 24.4
HPP92_022107 Vanilla planifolia HOM05D007047 ORTHO05D009177 1.4e-10 72.0 127 36.2
CSS0009500 Camellia sinensis var. sinensis HOM05D007047 ORTHO05D009177 2.5e-10 71.2 408 27.2
arahy.Tifrunner.gnm1.ann1.J4EMKX Arachis hypogaea HOM05D007047 ORTHO05D009177 4.2e-10 70.5 460 25.4
arahy.Tifrunner.gnm1.ann1.XH35PM Arachis hypogaea HOM05D007047 ORTHO05D009177 4.2e-10 70.5 460 25.4
EL10Ac4g09553 Beta vulgaris HOM05D007047 ORTHO05D009177 1.2e-09 68.9 426 23.5
unitig_744.g24476 Utricularia gibba HOM05D007047 ORTHO05D009177 2.1e-09 68.2 189 30.2
Lalb_Chr16g0379431 Lupinus albus HOM05D007047 ORTHO05D009177 3.6e-09 67.4 355 25.4
Nitab4.5_0002358g0010 Nicotiana tabacum HOM05D002030 ORTHO05D007413 4.6e-09 67.0 69 55.1
Gohir.D08G185400 Gossypium hirsutum HOM05D007047 ORTHO05D009177 6.1e-09 66.6 222 31.1
Aa31LG2G12990 Aethionema arabicum HOM05D007047 ORTHO05D009177 2.3e-08 64.7 499 23.2
ECA240G0572 Erigeron canadensis HOM05D007047 ORTHO05D009177 5.1e-08 63.5 327 22.9
Thhalv10027153m.g Eutrema salsugineum HOM05D007047 ORTHO05D009177 5.1e-08 63.5 367 23.7
Lsat_1_v5_gn_4_126100 Lactuca sativa HOM05D007047 ORTHO05D009177 6.7e-08 63.2 314 26.8
Cpa.g.sc1463.1 Carica papaya HOM05D007047 ORTHO05D009177 9.7e-07 59.3 46 60.9
Medtr5g013080 Medicago truncatula HOM05D007047 ORTHO05D009177 2.2e-06 58.2 47 57.4
HanXRQChr11g0329491 Helianthus annuus HOM05D007047 ORTHO05D009177 4.8e-06 57.0 51 49.0


User provided reference genes

Program Settings