Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc06g060810.3 Solanum lycopersicum HOM05D004968 ORTHO05D005922 6.9e-128 460.7 237 100.0
PGSC0003DMG400024156 Solanum tuberosum HOM05D004968 ORTHO05D005922 1.8e-112 409.5 252 86.1
Sopen06g020960 Solanum pennellii HOM05D004968 ORTHO05D005922 3.4e-111 405.2 252 86.9
Nitab4.5_0000959g0010 Nicotiana tabacum HOM05D004968 ORTHO05D005922 1.5e-95 353.2 248 76.6
Nitab4.5_0000618g0170 Nicotiana tabacum HOM05D004968 ORTHO05D005922 9.7e-90 334.0 234 78.2
CAN.G62.20 Capsicum annuum HOM05D004968 ORTHO05D005922 1.7e-89 333.2 260 69.6
Peaxi162Scf00190g01218 Petunia axillaris HOM05D004968 ORTHO05D005922 1.8e-75 286.6 223 70.9
Actinidia17822 Actinidia chinensis HOM05D004968 ORTHO05D005922 9.7e-66 254.2 252 51.6
Dinv23542 Davidia involucrata HOM05D004968 ORTHO05D005922 8.3e-65 251.1 252 53.2
Cc02_g17750 Coffea canephora HOM05D004968 ORTHO05D005922 4.1e-64 248.8 252 50.4
Rhsim05G0075100 Rhododendron simsii HOM05D004968 ORTHO05D005922 7.0e-64 248.1 252 49.6
Migut.B00251 Erythranthe guttata HOM05D004968 ORTHO05D005922 1.2e-60 237.3 262 46.9
QL11p042637 Quercus lobata HOM05D004968 ORTHO05D005922 1.2e-60 237.3 255 50.6
QL11p043149 Quercus lobata HOM05D004968 ORTHO05D005922 1.2e-60 237.3 255 50.6
Ciclev10028976m.g Citrus clementina HOM05D004968 ORTHO05D005922 8.0e-60 234.6 255 49.0
COL.COLO4_32438 Corchorus olitorius HOM05D004968 ORTHO05D005922 4.0e-59 232.3 256 47.7
MSTRG.17529 Avicennia marina HOM05D004968 ORTHO05D005922 8.8e-59 231.1 233 51.5
ECA234G4136 Erigeron canadensis HOM05D004968 ORTHO05D005922 2.6e-58 229.6 252 48.0
Thecc.02G124000 Theobroma cacao HOM05D004968 ORTHO05D005922 2.6e-58 229.6 256 47.7
GSVIVG01031935001 Vitis vinifera HOM05D004968 ORTHO05D005922 3.4e-58 229.2 254 47.6
MSTRG.16797 Avicennia marina HOM05D004968 ORTHO05D005922 2.8e-57 226.1 239 47.7
SalBow6G2079 Salvia bowleyana HOM05D004968 ORTHO05D005922 1.1e-56 224.2 254 46.5
CSS0007217 Camellia sinensis var. sinensis HOM05D004968 ORTHO05D005922 1.4e-56 223.8 253 49.4
Gohir.D12G018300 Gossypium hirsutum HOM05D004968 ORTHO05D005922 4.1e-56 222.2 256 47.3
CiPaw.05G062800 Carya illinoinensis HOM05D004968 ORTHO05D005922 5.4e-56 221.9 180 60.6
FvH4_2g08440 Fragaria vesca HOM05D004968 ORTHO05D005922 5.4e-56 221.9 256 47.7
Gohir.A12G017700 Gossypium hirsutum HOM05D004968 ORTHO05D005922 7.0e-56 221.5 256 46.9
SalBow5G1254 Salvia bowleyana HOM05D004968 ORTHO05D005922 9.1e-56 221.1 232 48.7
Oeu020768.3 Olea europaea HOM05D004968 ORTHO05D005922 2.7e-55 219.5 222 50.5
MD10G1078800 Malus domestica HOM05D004968 ORTHO05D005922 3.5e-55 219.2 250 48.0
HanXRQChr10g0307261 Helianthus annuus HOM05D004968 ORTHO05D005922 1.0e-54 217.6 248 48.4
CANSAT54G1571 Cannabis sativa HOM05D004968 ORTHO05D005922 1.3e-54 217.2 258 45.7
Lj5C198G20 Lonicera japonica HOM05D004968 ORTHO05D005922 1.7e-54 216.9 250 46.0
DCAR_022106 Daucus carota HOM05D004968 ORTHO05D005922 2.3e-54 216.5 256 46.9
Lsat_1_v5_gn_5_117961 Lactuca sativa HOM05D004968 ORTHO05D005922 2.3e-54 216.5 245 47.3
Eucgr.F03779 Eucalyptus grandis HOM05D004968 ORTHO05D005922 2.9e-54 216.1 254 46.9
ECA240G2790 Erigeron canadensis HOM05D004968 ORTHO05D005922 6.6e-54 214.9 183 55.2
PGR119G1160 Punica granatum HOM05D004968 ORTHO05D005922 8.6e-54 214.5 238 47.5
Potri.004G152800 Populus trichocarpa HOM05D004968 ORTHO05D005922 1.1e-53 214.2 254 44.9
Rhsim11G0174600 Rhododendron simsii HOM05D004968 ORTHO05D005922 1.1e-53 214.2 250 46.8
Aqoxy2G00255 Aquilegia oxysepala HOM05D004968 ORTHO05D005922 4.2e-53 212.2 235 46.8
Gorai.008G018600 Gossypium raimondii HOM05D004968 ORTHO05D005922 4.2e-53 212.2 252 47.2
Nn5g29559 Nelumbo nucifera HOM05D004968 ORTHO05D005922 4.2e-53 212.2 250 45.6
Prupe.8G100600 Prunus persica HOM05D004968 ORTHO05D005922 4.2e-53 212.2 239 48.5
THA.LOC104818761 Tarenaya hassleriana HOM05D004968 ORTHO05D005922 9.5e-53 211.1 250 42.8
THA.LOC104823527 Tarenaya hassleriana HOM05D004968 ORTHO05D005922 2.1e-52 209.9 255 43.5
RcHm_v2.0_Chr6g0263721 Rosa chinensis HOM05D004968 ORTHO05D005922 3.6e-52 209.1 245 47.3
Lalb_Chr16g0376541 Lupinus albus HOM05D004968 ORTHO05D005922 1.8e-51 206.8 232 47.4
TWI31G0993 Tripterygium wilfordii HOM05D004968 ORTHO05D005922 3.0e-51 206.1 249 43.8
ClCG09G016910 Citrullus lanatus HOM05D004968 ORTHO05D005922 6.8e-51 204.9 254 45.3
TWI79G0651 Tripterygium wilfordii HOM05D004968 ORTHO05D005922 6.8e-51 204.9 255 43.5
Hund06225 Selenicereus undatus HOM05D004968 ORTHO05D005922 2.6e-50 203.0 243 43.6
Lj5g0027841 Lotus japonicus HOM05D004968 ORTHO05D005922 5.7e-50 201.8 237 46.8
Psat2g154960 Pisum sativum HOM05D004968 ORTHO05D005922 5.7e-50 201.8 236 46.2
Sed0008504 Sechium edule HOM05D004968 ORTHO05D005922 7.5e-50 201.4 247 45.3
Manes.15G164800 Manihot esculenta HOM05D004968 ORTHO05D005922 9.8e-50 201.1 256 42.6
AL1G22930 Arabidopsis lyrata HOM05D004968 ORTHO05D005922 2.2e-49 199.9 254 42.1
DCAR_028995 Daucus carota HOM05D004968 ORTHO05D005922 2.2e-49 199.9 235 45.5
Thhalv10008545m.g Eutrema salsugineum HOM05D004968 ORTHO05D005922 4.9e-49 198.7 243 43.6
Gohir.D13G047300 Gossypium hirsutum HOM05D004968 ORTHO05D005922 4.9e-49 198.7 249 45.0
Medtr5g007330 Medicago truncatula HOM05D004968 ORTHO05D005922 4.9e-49 198.7 226 47.8
Lsat_1_v5_gn_9_109460 Lactuca sativa HOM05D004968 ORTHO05D005922 6.3e-49 198.4 269 41.3
Ca_24432_v3 Cicer arietinum L. HOM05D004968 ORTHO05D005922 8.3e-49 198.0 255 44.7
Carub.0001s1141 Capsella rubella HOM05D004968 ORTHO05D005922 1.1e-48 197.6 254 41.7
AUR62032493 Chenopodium quinoa HOM05D004968 ORTHO05D005922 1.1e-48 197.6 227 46.7
CsaV3_2G036400 Cucumis sativus L. HOM05D004968 ORTHO05D005922 1.1e-48 197.6 256 45.3
BcaC05g25044 Brassica carinata HOM05D004968 ORTHO05D005922 1.8e-48 196.8 258 42.6
AUR62011341 Chenopodium quinoa HOM05D004968 ORTHO05D005922 2.4e-48 196.4 227 46.3
Medtr5g007260 Medicago truncatula HOM05D004968 ORTHO05D005922 2.4e-48 196.4 234 45.7
Gorai.013G052900 Gossypium raimondii HOM05D004968 ORTHO05D005922 3.2e-48 196.1 250 45.2
Manes.17G099900 Manihot esculenta HOM05D004968 ORTHO05D005922 3.2e-48 196.1 235 46.4
EL10Ac9g21742 Beta vulgaris HOM05D004968 ORTHO05D005922 4.1e-48 195.7 239 44.8
CARHR012070 Cardamine hirsuta HOM05D004968 ORTHO05D005922 4.1e-48 195.7 255 41.6
unitig_60.g25856 Utricularia gibba HOM05D004968 ORTHO05D005922 4.1e-48 195.7 248 42.7
Aa31LG2G8870 Aethionema arabicum HOM05D004968 ORTHO05D005922 5.4e-48 195.3 254 40.2
LjContig00222g0024344 Lotus japonicus HOM05D004968 ORTHO05D005922 7.0e-48 194.9 250 44.0
AT1G11755 Arabidopsis thaliana HOM05D004968 ORTHO05D005922 1.2e-47 194.1 251 42.2
MELO3C021891.2 Cucumis melo HOM05D004968 ORTHO05D005922 1.2e-47 194.1 256 44.9
TPR.G37890 Trifolium pratense HOM05D004968 ORTHO05D005922 1.2e-47 194.1 237 44.7
TWI75G0648 Tripterygium wilfordii HOM05D004968 ORTHO05D005922 1.6e-47 193.7 249 43.8
Gohir.A13G048800 Gossypium hirsutum HOM05D004968 ORTHO05D005922 2.0e-47 193.4 261 43.7
Psat2g189320 Pisum sativum HOM05D004968 ORTHO05D005922 4.5e-47 192.2 236 44.9
vmacro17503 Vaccinium macrocarpon HOM05D004968 ORTHO05D005922 4.5e-47 192.2 233 44.6
vmacro17504 Vaccinium macrocarpon HOM05D004968 ORTHO05D005922 4.5e-47 192.2 236 44.5
Ah.01g019530 Amaranthus hybridus HOM05D004968 ORTHO05D005922 7.8e-47 191.4 250 43.2
Glyma.01G233700 Glycine max HOM05D004968 ORTHO05D005922 1.3e-46 190.7 236 44.5
Sc08g0000410 Simmondsia chinensis HOM05D004968 ORTHO05D005922 1.3e-46 190.7 185 53.5
TPR.G17161 Trifolium pratense HOM05D004968 ORTHO05D005922 1.3e-46 190.7 235 45.5
Aqoxy214s001 Aquilegia oxysepala HOM05D004968 ORTHO05D005922 1.7e-46 190.3 234 44.9
Aqoxy2G00971 Aquilegia oxysepala HOM05D004968 ORTHO05D005922 1.7e-46 190.3 235 44.7
Haze_02366 Corylus avellana HOM05D004968 ORTHO05D005922 2.3e-46 189.9 226 46.0
AUR62016719 Chenopodium quinoa HOM05D004968 ORTHO05D005922 3.9e-46 189.1 227 44.9
Duzib248G0873 Durio zibethinus HOM05D004968 ORTHO05D005922 3.9e-46 189.1 256 42.2
Glyma.11G009100 Glycine max HOM05D004968 ORTHO05D005922 5.0e-46 188.7 234 44.0
Phvul.002G041200 Phaseolus vulgaris HOM05D004968 ORTHO05D005922 5.0e-46 188.7 243 42.8
BcaB03g13234 Brassica carinata HOM05D004968 ORTHO05D005922 1.5e-45 187.2 238 42.9
A06p08310 Brassica napus HOM05D004968 ORTHO05D005922 1.5e-45 187.2 256 41.8
A08p33240 Brassica napus HOM05D004968 ORTHO05D005922 1.5e-45 187.2 238 42.4
BraA08t35243Z Brassica rapa HOM05D004968 ORTHO05D005922 1.5e-45 187.2 238 42.4
BraA06t24029Z Brassica rapa HOM05D001191 ORTHO05D000979 2.5e-45 186.4 255 41.6
MBI15_g22768_MAGBIO Magnolia biondii HOM05D004968 ORTHO05D005922 4.3e-45 185.7 239 41.8
Aa31LG1G3000 Aethionema arabicum HOM05D004968 ORTHO05D005922 5.6e-45 185.3 238 42.0
C08p14950 Brassica napus HOM05D004968 ORTHO05D005922 5.6e-45 185.3 239 42.7
CDE08G1236 Ceratophyllum demersum HOM05D004968 ORTHO05D005922 1.2e-44 184.1 239 42.7
BolC8t49124H Brassica oleracea HOM05D004968 ORTHO05D005922 2.1e-44 183.3 239 42.3
BcaB03g13233 Brassica carinata HOM05D004968 ORTHO05D005922 6.1e-44 181.8 239 42.3
C05p09870 Brassica napus HOM05D001191 ORTHO05D000979 6.1e-44 181.8 238 43.3
BolC5t29726H Brassica oleracea HOM05D001191 ORTHO05D000979 6.1e-44 181.8 238 43.3
Atru.chr5.2990 Acer truncatum HOM05D004968 ORTHO05D005922 1.8e-43 180.3 168 55.4
FAN24G2241 Fragaria x ananassa HOM05D004968 ORTHO05D005922 5.2e-43 178.7 226 44.7
Zm00001eb008090 Zea mays HOM05D004968 ORTHO05D005922 1.2e-42 177.6 256 39.8
Os03g0197000 Oryza sativa ssp. japonica HOM05D004968 ORTHO05D005922 2.6e-42 176.4 250 39.6
Sp1g10370 Schrenkiella parvula HOM05D004968 ORTHO05D005922 2.6e-42 176.4 242 39.7
Eucgr.L02365 Eucalyptus grandis HOM05D004968 ORTHO05D005922 1.1e-40 171.0 235 42.1
Hma1.2p1_1375F.1_g278980 Hydrangea macrophylla HOM05D004968 ORTHO05D005922 1.4e-40 170.6 153 55.6
Hma1.2p1_3179F.1_g333693 Hydrangea macrophylla HOM05D004968 ORTHO05D005922 1.4e-40 170.6 153 55.6
HPP92_014277 Vanilla planifolia HOM05D004968 ORTHO05D005922 1.4e-40 170.6 178 47.8
HPP92_024488 Vanilla planifolia HOM05D004968 ORTHO05D005922 3.2e-40 169.5 235 40.0
PSO210G6102 Papaver somniferum HOM05D004968 ORTHO05D005922 5.4e-40 168.7 236 39.8
PSO210G6272 Papaver somniferum HOM05D004968 ORTHO05D005922 1.6e-39 167.2 244 40.2
ATR0733G063 Amborella trichopoda HOM05D004968 ORTHO05D005922 2.7e-39 166.4 242 38.8
TAR628G0550 Trochodendron aralioides HOM05D004968 ORTHO05D005922 3.9e-38 162.5 242 40.9
TAR628G1407 Trochodendron aralioides HOM05D004968 ORTHO05D005922 3.9e-38 162.5 242 40.9
Cpa.g.sc62.129 Carica papaya HOM05D004968 ORTHO05D005922 8.6e-38 161.4 157 51.6
arahy.Tifrunner.gnm1.ann1.GI2C3C Arachis hypogaea HOM05D004968 ORTHO05D005922 5.6e-37 158.7 253 37.9
Os02g0197700 Oryza sativa ssp. japonica HOM05D004968 ORTHO05D005922 9.5e-37 157.9 251 37.1
Lalb_Chr05g0211211 Lupinus albus HOM05D004968 ORTHO05D005922 1.1e-35 154.5 236 39.4
SGA_v2.0_scaffold68G22950 Striga asiatica HOM05D004968 ORTHO05D005922 6.4e-33 145.2 257 37.4
SHI05416 Sapria himalayana HOM05D004968 ORTHO05D005922 8.3e-33 144.8 208 39.9
SEGI_04576 Sequoiadendron giganteum HOM05D004968 ORTHO05D005922 2.4e-32 143.3 199 38.7
VMungo1309G1500 Vigna mungo HOM05D004968 ORTHO05D005922 2.7e-31 139.8 157 47.1
HanXRQChr14g0443031 Helianthus annuus HOM05D004968 ORTHO05D005922 3.5e-31 139.4 233 39.5
TAR376G0049 Trochodendron aralioides HOM05D004968 ORTHO05D005922 7.8e-31 138.3 227 37.0
DCAR_022108 Daucus carota HOM05D004968 ORTHO05D005922 1.7e-30 137.1 99 61.6
vmacro02126 Vaccinium macrocarpon HOM05D004968 ORTHO05D005922 3.3e-29 132.9 205 40.0
Cc02_g20810 Coffea canephora HOM05D004968 ORTHO05D005922 8.9e-27 124.8 91 64.8
arahy.Tifrunner.gnm1.ann1.UWQD3U Arachis hypogaea HOM05D004968 ORTHO05D005922 9.9e-26 121.3 221 36.2
VMungo1309G3063 Vigna mungo HOM05D004968 ORTHO05D005922 9.9e-26 121.3 157 43.3
Hma1.2p1_1375F.1_g278990 Hydrangea macrophylla HOM05D004968 ORTHO05D005922 1.7e-25 120.6 102 60.8
AagrBONN_evm.TU.Sc2ySwM_117.3108 Anthoceros agrestis HOM05D004968 ORTHO05D005922 2.3e-22 110.2 170 37.1
SGA_v2.0_scaffold58G20551 Striga asiatica HOM05D004968 ORTHO05D005922 8.6e-22 108.2 121 50.4
Dinv42083 Davidia involucrata HOM05D004968 ORTHO05D005922 1.9e-21 107.1 200 35.5
Prupe.8G100800 Prunus persica HOM05D004968 ORTHO05D005922 5.6e-21 105.5 136 46.3
FAN20G2519 Fragaria x ananassa HOM05D004968 ORTHO05D005922 1.6e-20 104.0 86 59.3
SMO351G0289 Selaginella moellendorffii HOM05D004968 ORTHO05D005922 5.8e-18 95.5 211 29.4
Mapoly0014s0198 Marchantia polymorpha HOM05D004968 ORTHO05D005922 9.9e-18 94.7 117 42.7
Actinidia26757 Actinidia chinensis HOM05D004968 ORTHO05D005922 1.5e-13 80.9 115 42.6
TPR.G17189 Trifolium pratense HOM05D004968 ORTHO05D005922 1.8e-11 73.9 89 44.9
Lsat_1_v5_gn_0_28960 Lactuca sativa HOM05D004968 ORTHO05D005922 3.8e-09 66.2 49 61.2
Actinidia30740 Actinidia chinensis HOM05D004968 ORTHO05D005922 2.7e-07 60.1 80 42.5
Lsat_1_v5_gn_2_61580 Lactuca sativa HOM05D004968 ORTHO05D005922 6.0e-07 58.9 108 37.0
BolC3t13711H Brassica oleracea HOM05D000444 ORTHO05D000489 8.7e-06 55.1 44 56.8


User provided reference genes

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