Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc06g060730.3 Solanum lycopersicum HOM05D020458 ORTHO05D022160 6.2e-225 784.6 709 100.0
Sopen06g020850 Solanum pennellii HOM05D020458 ORTHO05D022160 1.1e-189 667.5 670 90.4
PGSC0003DMG400011881 Solanum tuberosum HOM05D020458 ORTHO05D022160 6.5e-182 641.7 770 83.4
Nitab4.5_0001076g0060 Nicotiana tabacum HOM05D020458 ORTHO05D022160 7.2e-64 249.6 712 37.2
Nitab4.5_0000618g0050 Nicotiana tabacum HOM05D020458 ORTHO05D022160 3.5e-58 230.7 715 37.8
CAN.G62.40 Capsicum annuum HOM05D020458 ORTHO05D022160 3.8e-57 227.3 400 60.5
Hma1.2p1_0316F.1_g123150 Hydrangea macrophylla HOM05D006954 ORTHO05D008729 5.2e-22 110.5 156 41.7
Manes.01G080700 Manihot esculenta HOM05D006954 ORTHO05D008729 2.0e-21 108.6 131 46.6
vmacro14083 Vaccinium macrocarpon HOM05D006954 ORTHO05D008729 6.4e-20 103.6 118 46.6
Rhsim07G0108500 Rhododendron simsii HOM05D001088 ORTHO05D002099 8.3e-20 103.2 129 44.2
Ciclev10019520m.g Citrus clementina HOM05D006954 ORTHO05D008729 4.1e-19 100.9 122 45.1
QL12p012133 Quercus lobata HOM05D006954 ORTHO05D008729 5.4e-19 100.5 155 40.6
Oeu026406.1 Olea europaea HOM05D006954 ORTHO05D008729 9.2e-19 99.8 118 44.9
Dinv21639 Davidia involucrata HOM05D006954 ORTHO05D008729 3.5e-18 97.8 612 25.5
Lj6C70T9 Lonicera japonica HOM05D006954 ORTHO05D008729 1.7e-17 95.5 123 43.1
Lj8P262T33 Lonicera japonica HOM05D006954 ORTHO05D008729 2.3e-17 95.1 126 44.4
Lj2A217G32 Lonicera japonica HOM05D006954 ORTHO05D008729 3.0e-17 94.7 131 43.5
TAR375G1092 Trochodendron aralioides HOM05D006954 ORTHO05D008729 8.6e-17 93.2 672 25.4
SHI20280 Sapria himalayana HOM05D006954 ORTHO05D008729 1.1e-16 92.8 134 41.0
TAR636G1544 Trochodendron aralioides HOM05D006954 ORTHO05D008729 1.9e-16 92.0 157 38.9
FAN04G0536 Fragaria x ananassa HOM05D006954 ORTHO05D008729 2.1e-15 88.6 109 43.1
Thecc.03G251300 Theobroma cacao HOM05D006954 ORTHO05D008729 1.4e-14 85.9 131 41.2
Eucgr.E00424 Eucalyptus grandis HOM05D006954 ORTHO05D008729 1.8e-14 85.5 137 39.4
FAN13G0002 Fragaria x ananassa HOM05D006954 ORTHO05D008729 3.1e-14 84.7 109 42.2
FAN18G2950 Fragaria x ananassa HOM05D006954 ORTHO05D008729 8.9e-14 83.2 109 42.2
Cfa011147 Carpinus fangiana HOM05D001088 ORTHO05D002099 1.5e-13 82.4 89 44.9
HanXRQChr16g0511611 Helianthus annuus HOM05D006954 ORTHO05D008729 1.5e-13 82.4 109 40.4
ECA233G0962 Erigeron canadensis HOM05D006954 ORTHO05D008729 2.0e-13 82.0 106 41.5
Prupe.5G069800 Prunus persica HOM05D006954 ORTHO05D008729 2.0e-13 82.0 114 37.7
FvH4_5g18930 Fragaria vesca HOM05D006954 ORTHO05D008729 3.4e-13 81.3 109 41.3
Haze_02712 Corylus avellana HOM05D006954 ORTHO05D008729 4.4e-13 80.9 84 44.0
Aqoxy7G00762 Aquilegia oxysepala HOM05D006954 ORTHO05D008729 5.8e-13 80.5 106 41.5
RcHm_v2.0_Chr7g0203321 Rosa chinensis HOM05D006954 ORTHO05D008729 9.8e-13 79.7 111 38.7
DCAR_006832 Daucus carota HOM05D001088 ORTHO05D002099 1.3e-12 79.3 609 23.5
QL04p036098 Quercus lobata HOM05D006954 ORTHO05D008729 1.3e-12 79.3 85 44.7
QL04p036448 Quercus lobata HOM05D006954 ORTHO05D008729 1.3e-12 79.3 85 44.7
QL04p036667 Quercus lobata HOM05D006954 ORTHO05D008729 1.3e-12 79.3 85 44.7
Duzib133G0753 Durio zibethinus HOM05D006954 ORTHO05D008729 3.7e-12 77.8 119 37.0
Duzib136G0004 Durio zibethinus HOM05D006954 ORTHO05D008729 3.7e-12 77.8 146 36.3
Atru.chr5.233 Acer truncatum HOM05D006954 ORTHO05D008729 4.9e-12 77.4 122 36.1
TAR375G0455 Trochodendron aralioides HOM05D006954 ORTHO05D008729 4.9e-12 77.4 635 24.9
PSO170G0413 Papaver somniferum HOM05D006954 ORTHO05D008729 6.4e-12 77.0 149 33.6
Duzib205G0178 Durio zibethinus HOM05D006954 ORTHO05D008729 1.4e-11 75.9 146 35.6
COL.COLO4_12483 Corchorus olitorius HOM05D006954 ORTHO05D008729 1.9e-11 75.5 119 34.5
FAN01G1544 Fragaria x ananassa HOM05D006954 ORTHO05D008729 1.9e-11 75.5 92 40.2
Gohir.A07G147000 Gossypium hirsutum HOM05D006954 ORTHO05D008729 2.4e-11 75.1 99 38.4
Gohir.D07G153000 Gossypium hirsutum HOM05D006954 ORTHO05D008729 2.4e-11 75.1 99 38.4
Gorai.001G175100 Gossypium raimondii HOM05D006954 ORTHO05D008729 2.4e-11 75.1 99 38.4
PSO017G4363 Papaver somniferum HOM05D006954 ORTHO05D008729 2.4e-11 75.1 154 36.4
TWI59G0609 Tripterygium wilfordii HOM05D006954 ORTHO05D008729 2.4e-11 75.1 133 33.1
MD02G1210900 Malus domestica HOM05D006954 ORTHO05D008729 4.1e-11 74.3 142 34.5
Thecc.01G384400 Theobroma cacao HOM05D006954 ORTHO05D008729 5.4e-11 73.9 138 34.8
Prupe.2G137000 Prunus persica HOM05D006954 ORTHO05D008729 7.1e-11 73.6 104 35.6
FAN10G2562 Fragaria x ananassa HOM05D006954 ORTHO05D008729 9.2e-11 73.2 93 39.8
CiPaw.14G025200 Carya illinoinensis HOM05D006954 ORTHO05D008729 1.2e-10 72.8 110 39.1
FAN06G0609 Fragaria x ananassa HOM05D006954 ORTHO05D008729 1.2e-10 72.8 100 39.0
FAN06G1022 Fragaria x ananassa HOM05D006954 ORTHO05D008729 1.2e-10 72.8 93 39.8
Dinv43668 Davidia involucrata HOM05D006954 ORTHO05D008729 2.7e-10 71.6 169 30.8
FAN03G1627 Fragaria x ananassa HOM05D006954 ORTHO05D008729 2.7e-10 71.6 92 39.1
RcHm_v2.0_Chr1g0349021 Rosa chinensis HOM05D006954 ORTHO05D008729 1.0e-09 69.7 84 40.5
FAN10G3525 Fragaria x ananassa HOM05D006954 ORTHO05D008729 3.0e-09 68.2 93 37.6
Glyma.11G167382 Glycine max HOM05D006954 ORTHO05D008729 3.9e-09 67.8 120 32.5
EL10Ac1g00835 Beta vulgaris HOM05D006954 ORTHO05D008729 6.6e-09 67.0 126 34.1
Ah.05g173790 Amaranthus hybridus HOM05D006954 ORTHO05D008729 8.6e-09 66.6 126 36.5
CAN.G1872.2 Capsicum annuum HOM05D006954 ORTHO05D008729 8.6e-09 66.6 82 39.0
Hma1.2p1_0041F.1_g025380 Hydrangea macrophylla HOM05D006954 ORTHO05D008729 1.5e-08 65.9 163 29.4
MD07G1114400 Malus domestica HOM05D006954 ORTHO05D008729 1.9e-08 65.5 125 33.6
Oeu009770.1 Olea europaea HOM05D006954 ORTHO05D008729 1.9e-08 65.5 105 36.2
Solyc01g090850.3 Solanum lycopersicum HOM05D006954 ORTHO05D008729 1.9e-08 65.5 82 37.8
Sopen01g036590 Solanum pennellii HOM05D006954 ORTHO05D008729 1.9e-08 65.5 82 37.8
Hund17048 Selenicereus undatus HOM05D006954 ORTHO05D008729 2.5e-08 65.1 123 35.0
Ciclev10023836m.g Citrus clementina HOM05D006638 ORTHO05D008246 3.3e-08 64.7 129 32.6
Nitab4.5_0000859g0170 Nicotiana tabacum HOM05D006954 ORTHO05D008729 3.3e-08 64.7 82 39.0
COL.COLO4_37173 Corchorus olitorius HOM05D006954 ORTHO05D008729 5.6e-08 63.9 167 29.3
Peaxi162Scf00803g00025 Petunia axillaris HOM05D006954 ORTHO05D008729 5.6e-08 63.9 83 38.6
Rhsim07G0031700 Rhododendron simsii HOM05D001088 ORTHO05D002099 1.2e-07 62.8 87 41.4
Actinidia27466 Actinidia chinensis HOM05D001088 ORTHO05D002099 1.6e-07 62.4 80 45.0
PGSC0003DMG400026019 Solanum tuberosum HOM05D006954 ORTHO05D008729 1.6e-07 62.4 85 36.5
Oeu031219.1 Olea europaea HOM05D006954 ORTHO05D008729 2.1e-07 62.0 105 35.2
Nitab4.5_0011151g0020 Nicotiana tabacum HOM05D006954 ORTHO05D008729 3.6e-07 61.2 112 34.8
Sc02g0002800 Simmondsia chinensis HOM05D006954 ORTHO05D008729 3.6e-07 61.2 104 38.5
Lj9P565T15 Lonicera japonica HOM05D006954 ORTHO05D008729 4.7e-07 60.8 75 37.3
GSVIVG01018156001 Vitis vinifera HOM05D006638 ORTHO05D008246 4.7e-07 60.8 107 39.3
Phvul.008G143700 Phaseolus vulgaris HOM05D006954 ORTHO05D008729 8.1e-07 60.1 155 31.6
AUR62004161 Chenopodium quinoa HOM05D006954 ORTHO05D008729 1.1e-06 59.7 140 30.7
Zm00001eb023500 Zea mays HOM05D006954 ORTHO05D008729 1.1e-06 59.7 111 38.7
AUR62013686 Chenopodium quinoa HOM05D006954 ORTHO05D008729 4.0e-06 57.8 140 30.0
VMungo1383G2724 Vigna mungo HOM05D006954 ORTHO05D008729 5.2e-06 57.4 85 32.9


User provided reference genes

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