Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc06g060720.3 Solanum lycopersicum HOM05D004155 ORTHO05D004837 1.6e-135 486.1 249 100.0
Sopen06g020840 Solanum pennellii HOM05D004155 ORTHO05D004837 1.4e-134 483.0 249 99.2
PGSC0003DMG400011880 Solanum tuberosum HOM05D004155 ORTHO05D004837 3.2e-128 461.8 249 94.8
CAN.G62.43 Capsicum annuum HOM05D004155 ORTHO05D004837 2.7e-119 432.2 249 89.6
PGSC0003DMG400004812 Solanum tuberosum HOM05D004155 ORTHO05D004837 5.4e-115 417.9 249 85.9
CAN.G1058.24 Capsicum annuum HOM05D004155 ORTHO05D004837 3.5e-114 415.2 249 85.1
Nitab4.5_0005960g0040 Nicotiana tabacum HOM05D004155 ORTHO05D004837 1.3e-113 413.3 249 84.7
CSS0005110 Camellia sinensis var. sinensis HOM05D004155 ORTHO05D004837 8.0e-103 377.5 250 80.0
CSS0021878 Camellia sinensis var. sinensis HOM05D004155 ORTHO05D004837 8.0e-103 377.5 250 80.0
Nitab4.5_0000618g0060 Nicotiana tabacum HOM05D004155 ORTHO05D004837 1.4e-102 376.7 217 89.9
Lj2A217G31 Lonicera japonica HOM05D004155 ORTHO05D004837 6.8e-102 374.4 246 80.9
Cc08_g12420 Coffea canephora HOM05D004155 ORTHO05D004837 8.9e-102 374.0 247 78.1
MELO3C013940.2 Cucumis melo HOM05D004155 ORTHO05D004837 5.7e-101 371.3 246 78.0
Hma1.2p1_0316F.1_g123160 Hydrangea macrophylla HOM05D004155 ORTHO05D004837 1.7e-100 369.8 248 78.2
Nitab4.5_0000312g0050 Nicotiana tabacum HOM05D004155 ORTHO05D004837 2.9e-100 369.0 219 84.5
ClCG10G002690 Citrullus lanatus HOM05D004155 ORTHO05D004837 3.2e-99 365.5 245 76.3
Gohir.A08G170500 Gossypium hirsutum HOM05D004155 ORTHO05D004837 4.1e-99 365.2 249 77.1
Gohir.D08G188700 Gossypium hirsutum HOM05D004155 ORTHO05D004837 9.2e-99 364.0 249 76.7
Gorai.004G198700 Gossypium raimondii HOM05D004155 ORTHO05D004837 9.2e-99 364.0 249 76.7
Nitab4.5_0001076g0090 Nicotiana tabacum HOM05D004155 ORTHO05D004837 9.2e-99 364.0 206 90.3
Actinidia22301 Actinidia chinensis HOM05D004155 ORTHO05D004837 1.2e-98 363.6 246 74.8
Thecc.03G251400 Theobroma cacao HOM05D004155 ORTHO05D004837 5.9e-98 361.3 249 75.9
Peaxi162Scf00174g00143 Petunia axillaris HOM05D004155 ORTHO05D004837 1.7e-97 359.8 228 82.0
CsaV3_3G002720 Cucumis sativus L. HOM05D004155 ORTHO05D004837 3.9e-97 358.6 246 76.8
Atru.chr9.1312 Acer truncatum HOM05D004155 ORTHO05D004837 1.1e-96 357.1 249 74.3
DCAR_006831 Daucus carota HOM05D004155 ORTHO05D004837 1.1e-96 357.1 248 75.4
Duzib068G1244 Durio zibethinus HOM05D004155 ORTHO05D004837 2.5e-96 355.9 249 73.5
Oeu026407.1 Olea europaea HOM05D004155 ORTHO05D004837 4.3e-96 355.1 257 75.9
Haze_07913 Corylus avellana HOM05D004155 ORTHO05D004837 7.3e-96 354.4 249 74.3
Duzib136G0003 Durio zibethinus HOM05D004155 ORTHO05D004837 2.1e-95 352.8 250 73.6
Manes.01G080600 Manihot esculenta HOM05D004155 ORTHO05D004837 2.8e-95 352.4 255 72.5
CiPaw.12G052800 Carya illinoinensis HOM05D004155 ORTHO05D004837 3.6e-95 352.1 249 73.9
Medtr4g100930 Medicago truncatula HOM05D004155 ORTHO05D004837 4.7e-95 351.7 251 75.3
Cfa012719 Carpinus fangiana HOM05D004155 ORTHO05D004837 6.2e-95 351.3 249 73.9
QL12p012142 Quercus lobata HOM05D004155 ORTHO05D004837 8.0e-95 350.9 247 74.5
Ca_21966_v3 Cicer arietinum L. HOM05D004155 ORTHO05D004837 3.1e-94 349.0 248 73.8
GSVIVG01001328001 Vitis vinifera HOM05D004155 ORTHO05D004837 4.0e-94 348.6 245 73.5
Sed0004864 Sechium edule HOM05D004155 ORTHO05D004837 2.0e-93 346.3 247 73.7
VMungo0251G3701 Vigna mungo HOM05D004155 ORTHO05D004837 3.4e-93 345.5 246 73.6
MSTRG.12099 Avicennia marina HOM05D004155 ORTHO05D004837 4.4e-93 345.1 254 74.0
Gohir.D12G219500 Gossypium hirsutum HOM05D004155 ORTHO05D004837 4.4e-93 345.1 249 70.7
Gorai.008G235200 Gossypium raimondii HOM05D004155 ORTHO05D004837 5.8e-93 344.7 249 70.7
Ciclev10021960m.g Citrus clementina HOM05D004155 ORTHO05D004837 1.7e-92 343.2 249 73.1
Glyma.17G141800 Glycine max HOM05D004155 ORTHO05D004837 1.7e-92 343.2 247 73.3
MSTRG.25524 Avicennia marina HOM05D004155 ORTHO05D004837 2.2e-92 342.8 255 71.4
EL10Ac9g21736 Beta vulgaris HOM05D004155 ORTHO05D004837 2.2e-92 342.8 246 71.1
COL.COLO4_37174 Corchorus olitorius HOM05D004155 ORTHO05D004837 2.9e-92 342.4 266 69.5
Manes.02G039600 Manihot esculenta HOM05D004155 ORTHO05D004837 3.7e-92 342.0 252 71.0
SGA_v2.0_scaffold146G36157 Striga asiatica HOM05D004155 ORTHO05D004837 3.7e-92 342.0 250 73.6
Potri.003G077000 Populus trichocarpa HOM05D004155 ORTHO05D004837 4.9e-92 341.7 255 72.5
TAR374G0401 Trochodendron aralioides HOM05D004155 ORTHO05D004837 1.1e-91 340.5 247 71.7
MD06G1058700 Malus domestica HOM05D004155 ORTHO05D004837 1.9e-91 339.7 249 72.3
Gohir.A12G217000 Gossypium hirsutum HOM05D004155 ORTHO05D004837 2.4e-91 339.3 249 69.9
PGR142G3296 Punica granatum HOM05D004155 ORTHO05D004837 2.4e-91 339.3 250 72.0
TAR374G0168 Trochodendron aralioides HOM05D004155 ORTHO05D004837 2.4e-91 339.3 247 71.7
DCAR_008491 Daucus carota HOM05D004155 ORTHO05D004837 4.1e-91 338.6 250 72.0
Prupe.5G069700 Prunus persica HOM05D004155 ORTHO05D004837 7.0e-91 337.8 248 72.2
SGA_v2.0_scaffold120G32880 Striga asiatica HOM05D004155 ORTHO05D004837 9.2e-91 337.4 239 75.3
Phvul.003G220600 Phaseolus vulgaris HOM05D004155 ORTHO05D004837 1.6e-90 336.7 246 71.1
TWI81G0233 Tripterygium wilfordii HOM05D004155 ORTHO05D004837 1.6e-90 336.7 248 71.4
ECA240G3289 Erigeron canadensis HOM05D004155 ORTHO05D004837 2.0e-90 336.3 255 71.8
FAN08G3385 Fragaria x ananassa HOM05D004155 ORTHO05D004837 2.0e-90 336.3 248 72.2
Glyma.05G059400 Glycine max HOM05D004155 ORTHO05D004837 2.0e-90 336.3 247 72.1
SalBow5G4949 Salvia bowleyana HOM05D004155 ORTHO05D004837 2.0e-90 336.3 235 74.5
Aqoxy5G03883 Aquilegia oxysepala HOM05D004155 ORTHO05D004837 2.7e-90 335.9 252 70.6
Oeu040215.1 Olea europaea HOM05D004155 ORTHO05D004837 2.7e-90 335.9 243 75.3
CANSAT21G0249 Cannabis sativa HOM05D004155 ORTHO05D004837 3.5e-90 335.5 256 70.3
HanXRQChr03g0088551 Helianthus annuus HOM05D004155 ORTHO05D004837 7.8e-90 334.3 235 74.0
Dinv21638 Davidia involucrata HOM05D004155 ORTHO05D004837 1.0e-89 334.0 220 76.8
Lalb_Chr16g0386681 Lupinus albus HOM05D004155 ORTHO05D004837 1.0e-89 334.0 255 70.6
TWI60G0516 Tripterygium wilfordii HOM05D004155 ORTHO05D004837 1.3e-89 333.6 248 71.0
Sc01g0008440 Simmondsia chinensis HOM05D004155 ORTHO05D004837 1.7e-89 333.2 247 71.7
FAN04G2128 Fragaria x ananassa HOM05D004155 ORTHO05D004837 3.0e-89 332.4 248 71.8
FAN13G1725 Fragaria x ananassa HOM05D004155 ORTHO05D004837 3.9e-89 332.0 247 71.3
TPR.G11991 Trifolium pratense HOM05D004155 ORTHO05D004837 5.0e-89 331.6 250 71.2
Nn6g33959 Nelumbo nucifera HOM05D004155 ORTHO05D004837 6.6e-89 331.3 246 71.5
FAN18G2873 Fragaria x ananassa HOM05D004155 ORTHO05D004837 1.1e-88 330.5 248 71.4
FAN18G3217 Fragaria x ananassa HOM05D004155 ORTHO05D004837 1.1e-88 330.5 248 71.4
FAN18G4261 Fragaria x ananassa HOM05D004155 ORTHO05D004837 1.1e-88 330.5 248 71.4
FvH4_5g18890 Fragaria vesca HOM05D004155 ORTHO05D004837 1.9e-88 329.7 248 71.4
Lj4g0023659 Lotus japonicus HOM05D004155 ORTHO05D004837 1.9e-88 329.7 250 70.0
Eucgr.I02746 Eucalyptus grandis HOM05D004155 ORTHO05D004837 2.5e-88 329.3 252 69.4
RcHm_v2.0_Chr7g0203271 Rosa chinensis HOM05D004155 ORTHO05D004837 2.5e-88 329.3 248 71.0
Lalb_Chr09g0330111 Lupinus albus HOM05D004155 ORTHO05D004837 4.3e-88 328.6 252 70.2
Potri.001G157900 Populus trichocarpa HOM05D004155 ORTHO05D004837 5.6e-88 328.2 257 69.3
Duzib084G0799 Durio zibethinus HOM05D004155 ORTHO05D004837 2.1e-87 326.2 249 69.9
Migut.A00944 Erythranthe guttata HOM05D004155 ORTHO05D004837 2.1e-87 326.2 238 73.5
Lsat_1_v5_gn_6_91040 Lactuca sativa HOM05D004155 ORTHO05D004837 3.6e-87 325.5 244 72.5
Sp3g02480 Schrenkiella parvula HOM05D004155 ORTHO05D004837 4.4e-85 318.5 252 65.5
HanXRQChr06g0164361 Helianthus annuus HOM05D004155 ORTHO05D004837 9.9e-85 317.4 247 67.6
THA.LOC104802903 Tarenaya hassleriana HOM05D004155 ORTHO05D004837 9.9e-85 317.4 249 67.1
Thhalv10014511m.g Eutrema salsugineum HOM05D004155 ORTHO05D004837 1.7e-84 316.6 254 65.4
PSO782G0374 Papaver somniferum HOM05D004155 ORTHO05D004837 1.4e-83 313.5 260 66.5
TAR375G0135 Trochodendron aralioides HOM05D004155 ORTHO05D004837 2.4e-83 312.8 232 71.1
CARHR195630 Cardamine hirsuta HOM05D004155 ORTHO05D004837 3.2e-83 312.4 245 65.3
CARHR077510 Cardamine hirsuta HOM05D004155 ORTHO05D004837 4.1e-83 312.0 252 64.7
arahy.Tifrunner.gnm1.ann1.FN76PE Arachis hypogaea HOM05D004155 ORTHO05D004837 7.1e-83 311.2 249 68.7
A10p21850 Brassica napus HOM05D004155 ORTHO05D004837 7.1e-83 311.2 247 64.4
PSO063G2044 Papaver somniferum HOM05D004155 ORTHO05D004837 7.1e-83 311.2 259 65.6
Aa31LG11G12130 Aethionema arabicum HOM05D004155 ORTHO05D004837 9.2e-83 310.8 248 66.1
AL6G28640 Arabidopsis lyrata HOM05D004155 ORTHO05D004837 9.2e-83 310.8 254 64.2
BcaB08g36763 Brassica carinata HOM05D004155 ORTHO05D004837 1.2e-82 310.5 253 64.0
BraA03t12501Z Brassica rapa HOM05D004155 ORTHO05D004837 1.2e-82 310.5 249 63.9
BcaC04g18780 Brassica carinata HOM05D004155 ORTHO05D004837 2.1e-82 309.7 246 63.4
AT5G17550 Arabidopsis thaliana HOM05D004155 ORTHO05D004837 2.7e-82 309.3 254 64.2
BcaB04g19367 Brassica carinata HOM05D004155 ORTHO05D004837 2.7e-82 309.3 256 63.7
Carub.0006s1579 Capsella rubella HOM05D004155 ORTHO05D004837 2.7e-82 309.3 248 65.7
Psat4g072240 Pisum sativum HOM05D004155 ORTHO05D004837 2.7e-82 309.3 251 68.9
Ah.11g040960 Amaranthus hybridus HOM05D004155 ORTHO05D004837 3.5e-82 308.9 233 68.7
C09p59610 Brassica napus HOM05D004155 ORTHO05D004837 3.5e-82 308.9 246 63.4
BraA10t44245Z Brassica rapa HOM05D004155 ORTHO05D004837 7.8e-82 307.8 246 63.4
Sp6g26670 Schrenkiella parvula HOM05D004155 ORTHO05D004837 7.8e-82 307.8 250 64.4
Carub.0003s0263 Capsella rubella HOM05D004155 ORTHO05D004837 1.3e-81 307.0 251 63.7
BolC9t58800H Brassica oleracea HOM05D004155 ORTHO05D004837 1.7e-81 306.6 253 62.5
arahy.Tifrunner.gnm1.ann1.9Q5ZL0 Arachis hypogaea HOM05D004155 ORTHO05D004837 2.3e-81 306.2 233 71.2
Ah.11g040940 Amaranthus hybridus HOM05D004155 ORTHO05D004837 3.0e-81 305.8 233 68.2
Sabra03G0047400 Salix brachista HOM05D004155 ORTHO05D004837 3.9e-81 305.4 314 57.3
Aa31LG5G14010 Aethionema arabicum HOM05D004155 ORTHO05D004837 3.3e-80 302.4 250 62.4
THA.LOC104820827 Tarenaya hassleriana HOM05D004155 ORTHO05D004837 5.6e-80 301.6 252 64.3
AT3G03490 Arabidopsis thaliana HOM05D004155 ORTHO05D004837 1.2e-79 300.4 254 61.8
MBI04_g09499_MAGBIO Magnolia biondii HOM05D004155 ORTHO05D004837 1.2e-79 300.4 263 65.8
AL3G13170 Arabidopsis lyrata HOM05D004155 ORTHO05D004837 4.7e-79 298.5 252 61.9
AUR62016725 Chenopodium quinoa HOM05D004155 ORTHO05D004837 8.1e-79 297.7 246 64.6
unitig_37.g12342 Utricularia gibba HOM05D004155 ORTHO05D004837 8.1e-79 297.7 251 62.5
BcaC01g04400 Brassica carinata HOM05D004155 ORTHO05D004837 3.1e-78 295.8 253 62.5
C03p40540 Brassica napus HOM05D004155 ORTHO05D004837 3.1e-78 295.8 253 62.5
BolC3t16319H Brassica oleracea HOM05D004155 ORTHO05D004837 3.1e-78 295.8 253 62.5
A03p33290 Brassica napus HOM05D004155 ORTHO05D004837 4.4e-77 292.0 253 62.1
Sabra01G0133600 Salix brachista HOM05D004155 ORTHO05D004837 2.9e-76 289.3 323 53.6
Ah.11g040910 Amaranthus hybridus HOM05D004155 ORTHO05D004837 8.7e-73 277.7 232 63.4
Rhsim02G0215900 Rhododendron simsii HOM05D004155 ORTHO05D004837 8.7e-73 277.7 317 52.7
HPP92_007424 Vanilla planifolia HOM05D004155 ORTHO05D004837 3.6e-71 272.3 261 58.6
CDE11G1226 Ceratophyllum demersum HOM05D004155 ORTHO05D004837 9.9e-69 264.2 247 57.9
CDE09G1113 Ceratophyllum demersum HOM05D004155 ORTHO05D004837 1.6e-66 256.9 248 58.1
Actinidia13193 Actinidia chinensis HOM05D004155 ORTHO05D004837 1.3e-63 247.3 152 78.3
ATR0317G023 Amborella trichopoda HOM05D004155 ORTHO05D004837 1.6e-63 246.9 246 59.8
Zm00001eb249680 Zea mays HOM05D004155 ORTHO05D004837 2.1e-63 246.5 248 54.4
Os02g0661000 Oryza sativa ssp. japonica HOM05D004155 ORTHO05D004837 3.6e-63 245.7 252 53.6
Ah.11g040970 Amaranthus hybridus HOM05D004155 ORTHO05D004837 1.5e-61 240.4 233 57.1
Phvul.003G220550 Phaseolus vulgaris HOM05D004155 ORTHO05D004837 2.0e-61 240.0 147 77.6
vmacro11263 Vaccinium macrocarpon HOM05D004155 ORTHO05D004837 3.4e-61 239.2 136 84.6
Nn1g00995 Nelumbo nucifera HOM05D004155 ORTHO05D004837 1.6e-58 230.3 238 56.7
Zm00001eb186660 Zea mays HOM05D004155 ORTHO05D004837 3.5e-58 229.2 250 52.8
Gorai.003G171500 Gossypium raimondii HOM05D004155 ORTHO05D004837 2.2e-52 209.9 216 54.6
Gohir.D03G162900 Gossypium hirsutum HOM05D004155 ORTHO05D004837 6.4e-52 208.4 167 63.5
Gohir.A03G008100 Gossypium hirsutum HOM05D004155 ORTHO05D004837 4.2e-51 205.7 167 62.3
Pp3c2_16800 Physcomitrium patens HOM05D004155 ORTHO05D004837 2.5e-48 196.4 268 47.0
Cpa.g.sc43.156 Carica papaya HOM05D004155 ORTHO05D004837 2.9e-44 183.0 121 71.9
Mapoly0045s0092 Marchantia polymorpha HOM05D004155 ORTHO05D004837 3.2e-43 179.5 288 41.3
TPR.G37592 Trifolium pratense HOM05D004155 ORTHO05D004837 2.1e-42 176.8 117 75.2
Ah.11g040930 Amaranthus hybridus HOM05D004155 ORTHO05D004837 3.5e-42 176.0 192 54.2
Actinidia14427 Actinidia chinensis HOM05D004155 ORTHO05D004837 1.0e-33 147.9 128 64.1
CBR_g22421 Chara braunii HOM05D004155 ORTHO05D004837 2.3e-33 146.7 277 38.3
AagrBONN_evm.TU.Sc2ySwM_228.1233 Anthoceros agrestis HOM05D004155 ORTHO05D004837 3.9e-33 146.0 265 37.4
Cpa.g.sc43.157 Carica papaya HOM05D004155 ORTHO05D004837 2.5e-32 143.3 130 64.6
CAN.G1058.18 Capsicum annuum HOM05D002401 ORTHO05D007109 1.0e-28 131.3 69 92.8
SMO146G0254 Selaginella moellendorffii HOM05D004155 ORTHO05D004837 4.2e-27 125.9 95 63.2
SMO340G0179 Selaginella moellendorffii HOM05D004155 ORTHO05D004837 2.1e-26 123.6 87 65.5
TPR.G37609 Trifolium pratense HOM05D004155 ORTHO05D004837 1.5e-24 117.5 103 65.0
PGSC0003DMG400045666 Solanum tuberosum HOM05D004155 ORTHO05D004837 1.4e-19 100.9 78 66.7
Thhalv10015034m.g Eutrema salsugineum HOM05D004155 ORTHO05D004837 7.2e-19 98.6 107 51.4
arahy.Tifrunner.gnm1.ann1.Z2VGSW Arachis hypogaea HOM05D004155 ORTHO05D004837 8.0e-18 95.1 78 69.2
PRCOL_00005614 Prasinoderma coloniale HOM05D004155 ORTHO05D004837 1.8e-17 94.0 110 38.2
PSO384G2334 Papaver somniferum HOM05D004155 ORTHO05D004837 6.7e-17 92.0 121 48.8
arahy.Tifrunner.gnm1.ann1.BEL5CJ Arachis hypogaea HOM05D004155 ORTHO05D004837 1.5e-16 90.9 78 66.7
Cre02.g119000 Chlamydomonas reinhardtii HOM05D004155 ORTHO05D004837 2.6e-16 90.1 90 45.6
ECA247G1153 Erigeron canadensis HOM05D004155 ORTHO05D004837 6.5e-12 75.5 96 51.0
SEGI_17945 Sequoiadendron giganteum HOM05D004155 ORTHO05D004837 3.2e-11 73.2 134 44.8
Pp3c1_22650 Physcomitrium patens HOM05D004155 ORTHO05D004837 1.2e-10 71.2 81 48.1
Cfa022446 Carpinus fangiana HOM05D004155 ORTHO05D126510 2.3e-09 67.0 148 32.4


User provided reference genes

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