Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc06g060460.3 Solanum lycopersicum HOM05D006006 ORTHO05D007566 4.7e-202 707.6 346 100.0
Sopen06g020580 Solanum pennellii HOM05D006006 ORTHO05D007566 3.0e-201 704.9 346 99.4
PGSC0003DMG400017575 Solanum tuberosum HOM05D006006 ORTHO05D007566 1.1e-195 686.4 346 96.8
CAN.G62.45 Capsicum annuum HOM05D006006 ORTHO05D007566 2.8e-186 655.2 348 92.8
Nitab4.5_0000633g0110 Nicotiana tabacum HOM05D006006 ORTHO05D007566 8.9e-185 650.2 347 91.6
Oeu051259.1 Olea europaea HOM05D006006 ORTHO05D007566 8.4e-159 563.9 347 81.3
GSVIVG01010048001 Vitis vinifera HOM05D006006 ORTHO05D007566 3.5e-157 558.5 341 77.7
Thecc.08G145800 Theobroma cacao HOM05D006006 ORTHO05D007566 8.7e-156 553.9 343 76.4
Duzib093G0547 Durio zibethinus HOM05D006006 ORTHO05D007566 1.9e-155 552.7 344 76.2
COL.COLO4_04848 Corchorus olitorius HOM05D006006 ORTHO05D007566 2.1e-154 549.3 343 77.0
TAR381G0495 Trochodendron aralioides HOM05D006006 ORTHO05D007566 4.8e-154 548.1 342 76.3
Lj7A365T41 Lonicera japonica HOM05D006006 ORTHO05D007566 3.4e-152 542.0 342 76.6
Gorai.005G081300 Gossypium raimondii HOM05D006006 ORTHO05D007566 2.2e-151 539.3 343 74.9
Oeu014478.2 Olea europaea HOM05D006006 ORTHO05D007566 2.2e-151 539.3 366 73.8
Gohir.D02G072100 Gossypium hirsutum HOM05D006006 ORTHO05D007566 4.9e-151 538.1 343 74.6
Cfa018352 Carpinus fangiana HOM05D006006 ORTHO05D007566 3.2e-150 535.4 345 75.7
Atru.chr13.1712 Acer truncatum HOM05D006006 ORTHO05D007566 5.5e-150 534.6 348 73.0
DCAR_008158 Daucus carota HOM05D006006 ORTHO05D007566 9.3e-150 533.9 338 74.6
Gohir.A02G066200 Gossypium hirsutum HOM05D006006 ORTHO05D007566 9.3e-150 533.9 343 74.3
CSS0049727 Camellia sinensis var. sinensis HOM05D006006 ORTHO05D007566 1.6e-149 533.1 344 75.0
Manes.02G175900 Manihot esculenta HOM05D006006 ORTHO05D007566 2.1e-149 532.7 337 74.2
MSTRG.24200 Avicennia marina HOM05D006006 ORTHO05D007566 4.6e-149 531.6 347 75.5
CSS0044653 Camellia sinensis var. sinensis HOM05D006006 ORTHO05D007566 1.0e-148 530.4 344 74.7
Prupe.8G021400 Prunus persica HOM05D006006 ORTHO05D007566 3.0e-148 528.9 341 73.6
CiPaw.15G020800 Carya illinoinensis HOM05D006006 ORTHO05D007566 3.9e-148 528.5 344 75.9
QL02p024995 Quercus lobata HOM05D006006 ORTHO05D007566 8.7e-148 527.3 347 75.5
THA.LOC104813696 Tarenaya hassleriana HOM05D006006 ORTHO05D007566 1.1e-147 526.9 343 75.2
Gorai.013G105300 Gossypium raimondii HOM05D006006 ORTHO05D007566 1.5e-147 526.6 341 73.9
Cpa.g.sc49.54 Carica papaya HOM05D006006 ORTHO05D007566 2.5e-147 525.8 342 73.7
Gohir.D03G061500 Gossypium hirsutum HOM05D006006 ORTHO05D007566 2.5e-147 525.8 341 74.2
Nn1g06190 Nelumbo nucifera HOM05D006006 ORTHO05D007566 6.2e-146 521.2 340 75.0
CiPaw.16G016900 Carya illinoinensis HOM05D006006 ORTHO05D007566 1.4e-145 520.0 347 73.8
Haze_17707 Corylus avellana HOM05D006006 ORTHO05D007566 1.4e-145 520.0 375 69.6
Ciclev10001700m.g Citrus clementina HOM05D006006 ORTHO05D007566 1.8e-145 519.6 342 72.2
CsaV3_7G024870 Cucumis sativus L. HOM05D006006 ORTHO05D007566 3.1e-145 518.8 343 74.1
MBI03_g11319_MAGBIO Magnolia biondii HOM05D006006 ORTHO05D007566 9.0e-145 517.3 341 72.1
FvH4_2g14460 Fragaria vesca HOM05D006006 ORTHO05D007566 1.2e-144 516.9 338 72.8
RcHm_v2.0_Chr6g0276791 Rosa chinensis HOM05D006006 ORTHO05D007566 1.2e-144 516.9 340 72.6
CANSAT25G3881 Cannabis sativa HOM05D006006 ORTHO05D007566 2.6e-144 515.8 344 70.9
Potri.002G071300 Populus trichocarpa HOM05D006006 ORTHO05D007566 2.6e-144 515.8 338 73.7
PGR042G3502 Punica granatum HOM05D006006 ORTHO05D007566 2.6e-144 515.8 338 75.4
ClCG09G009860 Citrullus lanatus HOM05D006006 ORTHO05D007566 7.6e-144 514.2 343 72.9
MD10G1017500 Malus domestica HOM05D006006 ORTHO05D007566 7.6e-144 514.2 335 72.5
Sabra02G0056100 Salix brachista HOM05D006006 ORTHO05D007566 1.0e-143 513.8 338 73.4
FAN24G1565 Fragaria x ananassa HOM05D006006 ORTHO05D007566 1.3e-143 513.5 338 72.2
Aqoxy6G00385 Aquilegia oxysepala HOM05D006006 ORTHO05D007566 2.9e-143 512.3 345 71.6
MD05G1017500 Malus domestica HOM05D006006 ORTHO05D007566 4.9e-143 511.5 341 71.8
Migut.N03230 Erythranthe guttata HOM05D006006 ORTHO05D007566 6.5e-143 511.1 351 72.9
Eucgr.F04261 Eucalyptus grandis HOM05D006006 ORTHO05D007566 1.1e-142 510.4 336 70.5
FAN15G3392 Fragaria x ananassa HOM05D006006 ORTHO05D007566 1.1e-142 510.4 338 71.6
Nn5g28652 Nelumbo nucifera HOM05D006006 ORTHO05D007566 1.4e-142 510.0 340 72.6
TWI34G1885 Tripterygium wilfordii HOM05D006006 ORTHO05D007566 1.9e-142 509.6 337 73.3
FAN27G0920 Fragaria x ananassa HOM05D006006 ORTHO05D007566 4.2e-142 508.4 338 71.3
Cc10_g14250 Coffea canephora HOM05D006006 ORTHO05D007566 3.5e-141 505.4 328 75.0
Glyma.14G123000 Glycine max HOM05D006006 ORTHO05D007566 4.6e-141 505.0 344 69.5
Lj4A692T31 Lonicera japonica HOM05D006006 ORTHO05D007566 1.3e-140 503.4 343 70.3
PSO675G8728 Papaver somniferum HOM05D006006 ORTHO05D007566 1.3e-140 503.4 337 72.1
TWI60G1394 Tripterygium wilfordii HOM05D006006 ORTHO05D007566 1.8e-140 503.1 338 71.6
FAN20G0686 Fragaria x ananassa HOM05D006006 ORTHO05D007566 2.3e-140 502.7 373 66.0
Sed0017044 Sechium edule HOM05D006006 ORTHO05D007566 5.1e-140 501.5 343 70.3
Glyma.13G039000 Glycine max HOM05D006006 ORTHO05D007566 6.7e-140 501.1 344 69.5
PSO541G2188 Papaver somniferum HOM05D006006 ORTHO05D007566 1.9e-139 499.6 337 71.5
MELO3C023695.2 Cucumis melo HOM05D006006 ORTHO05D007566 8.2e-138 494.2 402 63.2
Lalb_Chr04g0263651 Lupinus albus HOM05D006006 ORTHO05D007566 1.1e-137 493.8 345 71.0
unitig_21.g20180 Utricularia gibba HOM05D006006 ORTHO05D007566 3.1e-137 492.3 346 69.4
ATR1136G139 Amborella trichopoda HOM05D006006 ORTHO05D007566 4.1e-137 491.9 340 70.0
unitig_744.g24565 Utricularia gibba HOM05D006006 ORTHO05D007566 4.1e-137 491.9 347 68.9
HanXRQChr04g0109001 Helianthus annuus HOM05D006006 ORTHO05D007566 6.9e-137 491.1 343 70.6
Thhalv10008107m.g Eutrema salsugineum HOM05D006006 ORTHO05D007566 1.5e-136 490.0 346 70.5
BcaB07g32125 Brassica carinata HOM05D006006 ORTHO05D007566 7.6e-136 487.6 334 71.9
Carub.0001s2078 Capsella rubella HOM05D006006 ORTHO05D007566 7.6e-136 487.6 339 71.1
arahy.Tifrunner.gnm1.ann1.T5RWDG Arachis hypogaea HOM05D006006 ORTHO05D007566 2.9e-135 485.7 349 67.0
arahy.Tifrunner.gnm1.ann1.D9Y8GI Arachis hypogaea HOM05D006006 ORTHO05D007566 3.8e-135 485.3 349 67.3
Phvul.001G072900 Phaseolus vulgaris HOM05D006006 ORTHO05D007566 5.0e-135 485.0 338 68.9
AT1G21370 Arabidopsis thaliana HOM05D006006 ORTHO05D007566 1.2e-133 480.3 341 70.1
CARHR021760 Cardamine hirsuta HOM05D006006 ORTHO05D007566 2.1e-133 479.6 341 70.1
HanXRQChr08g0217661 Helianthus annuus HOM05D006006 ORTHO05D007566 4.6e-133 478.4 350 68.6
Sp1g18920 Schrenkiella parvula HOM05D006006 ORTHO05D007566 4.6e-133 478.4 347 68.6
Aa31LG7G5530 Aethionema arabicum HOM05D006006 ORTHO05D007566 5.1e-132 474.9 343 67.9
Lj1g0023019 Lotus japonicus HOM05D006006 ORTHO05D007566 1.1e-131 473.8 348 68.1
Medtr1g029000 Medicago truncatula HOM05D006006 ORTHO05D007566 1.5e-131 473.4 348 67.2
Lsat_1_v5_gn_1_8980 Lactuca sativa HOM05D006006 ORTHO05D007566 3.3e-131 472.2 291 77.3
A06p17420 Brassica napus HOM05D006006 ORTHO05D007566 4.3e-131 471.9 347 67.7
C05p20260 Brassica napus HOM05D006006 ORTHO05D007566 4.3e-131 471.9 350 67.4
BolC5t30719H Brassica oleracea HOM05D006006 ORTHO05D007566 4.3e-131 471.9 350 67.4
Ah.01g005030 Amaranthus hybridus HOM05D006006 ORTHO05D007566 5.7e-131 471.5 341 67.7
BraA06t24839Z Brassica rapa HOM05D006006 ORTHO05D007566 5.7e-131 471.5 349 67.3
BcaC05g26044 Brassica carinata HOM05D006006 ORTHO05D007566 9.7e-131 470.7 350 67.4
EL10Ac9g20647 Beta vulgaris HOM05D006006 ORTHO05D007566 2.8e-130 469.2 341 66.9
BcaB03g12819 Brassica carinata HOM05D006006 ORTHO05D007566 8.2e-130 467.6 342 66.4
VMungo0647G2124 Vigna mungo HOM05D006006 ORTHO05D007566 2.4e-129 466.1 326 68.7
HPP92_004629 Vanilla planifolia HOM05D006006 ORTHO05D007566 3.1e-129 465.7 338 65.7
TPR.G33300 Trifolium pratense HOM05D006006 ORTHO05D007566 5.3e-129 464.9 343 67.1
Peaxi162Scf00051g00516 Petunia axillaris HOM05D006006 ORTHO05D007566 6.9e-129 464.5 234 91.9
Psat0s5561g0040 Pisum sativum HOM05D006006 ORTHO05D007566 1.5e-128 463.4 351 65.8
Ca_12665_v3 Cicer arietinum L. HOM05D006006 ORTHO05D007566 1.0e-127 460.7 344 67.4
AL1G34470 Arabidopsis lyrata HOM05D006006 ORTHO05D007566 6.5e-127 458.0 301 73.4
Actinidia15154 Actinidia chinensis HOM05D006006 ORTHO05D007566 1.4e-126 456.8 299 73.9
Os04g0438500 Oryza sativa ssp. japonica HOM05D006006 ORTHO05D007566 7.2e-126 454.5 338 66.3
C08p20770 Brassica napus HOM05D006006 ORTHO05D007566 9.4e-126 454.1 324 68.5
Nitab4.5_0008475g0010 Nicotiana tabacum HOM05D006006 ORTHO05D007566 2.4e-121 439.5 242 90.9
Zm00001eb422860 Zea mays HOM05D006006 ORTHO05D007566 4.1e-121 438.7 337 63.5
ECA247G2705 Erigeron canadensis HOM05D006006 ORTHO05D007566 9.4e-118 427.6 257 78.6
SHI09110 Sapria himalayana HOM05D006006 ORTHO05D007566 2.3e-116 422.9 337 62.9
BolC8t49716H Brassica oleracea HOM05D006006 ORTHO05D007566 1.8e-113 413.3 325 63.1
Dinv25817 Davidia involucrata HOM05D006006 ORTHO05D007566 2.4e-113 412.9 248 82.3
CDE06G2625 Ceratophyllum demersum HOM05D006006 ORTHO05D007566 5.3e-113 411.8 249 75.5
CDE08G1689 Ceratophyllum demersum HOM05D006006 ORTHO05D007566 9.1e-113 411.0 249 75.1
SEGI_37970 Sequoiadendron giganteum HOM05D006006 ORTHO05D007566 5.3e-105 385.2 330 61.2
Mapoly0050s0105 Marchantia polymorpha HOM05D006006 ORTHO05D007566 2.7e-104 382.9 302 61.3
BcaC07g39093 Brassica carinata HOM05D006006 ORTHO05D007566 9.1e-97 357.8 325 57.8
Pp3c25_12020 Physcomitrium patens HOM05D006006 ORTHO05D007566 2.9e-95 352.8 328 54.3
C06p40100 Brassica napus HOM05D006006 ORTHO05D007566 1.4e-92 344.0 232 70.7
Gohir.A02G108508 Gossypium hirsutum HOM05D006006 ORTHO05D007566 3.0e-92 342.8 238 71.0
Gohir.A02G108509 Gossypium hirsutum HOM05D006006 ORTHO05D007566 3.0e-92 342.8 238 71.0
Sc02g0004370 Simmondsia chinensis HOM05D006006 ORTHO05D007566 3.0e-92 342.8 236 71.6
SGA_v2.0_scaffold25G11170 Striga asiatica HOM05D006006 ORTHO05D007566 6.8e-92 341.7 243 71.6
Pp3c6_4630 Physcomitrium patens HOM05D006006 ORTHO05D007566 3.8e-87 325.9 326 51.5
SMO228G0011 Selaginella moellendorffii HOM05D006006 ORTHO05D007566 3.7e-82 309.3 245 60.0
AagrBONN_evm.TU.Sc2ySwM_344.2333 Anthoceros agrestis HOM05D006006 ORTHO05D007566 8.9e-68 261.5 173 71.7
MCO04G174 Micromonas commoda HOM05D006006 ORTHO05D007566 3.3e-62 243.0 336 42.3
TAR625G0955 Trochodendron aralioides HOM05D006006 ORTHO05D007566 8.1e-61 238.4 163 69.9
AUR62025132 Chenopodium quinoa HOM05D006006 ORTHO05D007566 4.0e-60 236.1 194 59.3
AUR62037127 Chenopodium quinoa HOM05D006006 ORTHO05D007566 7.6e-59 231.9 194 58.8
PRCOL_00006391 Prasinoderma coloniale HOM05D006006 ORTHO05D007566 3.3e-54 216.5 205 51.7
Cre02.g116000 Chlamydomonas reinhardtii HOM05D006006 ORTHO05D007566 1.7e-50 204.1 180 57.8
Pp3c5_24650 Physcomitrium patens HOM05D006006 ORTHO05D007566 4.3e-46 189.5 161 60.9
SGA_v2.0_scaffold35G14089 Striga asiatica HOM05D006006 ORTHO05D007566 4.0e-28 129.8 79 77.2
Ah.02g110550 Amaranthus hybridus HOM05D006006 ORTHO05D007566 4.9e-26 122.9 73 79.5
CDE04G1521 Ceratophyllum demersum HOM05D000566 ORTHO05D000686 5.9e-19 99.4 57 73.7
Pp3c16_22840 Physcomitrium patens HOM05D006006 ORTHO05D318415 5.5e-09 66.2 53 60.4


User provided reference genes

Program Settings