Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc06g060420.3 Solanum lycopersicum HOM05D005174 ORTHO05D006784 5.9e-175 617.5 320 100.0
Sopen06g020560 Solanum pennellii HOM05D005174 ORTHO05D006784 8.3e-169 597.0 320 96.6
PGSC0003DMG400017574 Solanum tuberosum HOM05D005174 ORTHO05D006784 1.2e-167 593.2 320 95.9
Nitab4.5_0008211g0030 Nicotiana tabacum HOM05D005174 ORTHO05D006784 3.3e-141 505.4 333 80.5
CAN.G1396.5 Capsicum annuum HOM05D005174 ORTHO05D006784 3.0e-126 455.7 254 91.3
Peaxi162Scf00051g00623 Petunia axillaris HOM05D005174 ORTHO05D006784 5.6e-125 451.4 320 76.6
Nitab4.5_0000633g0140 Nicotiana tabacum HOM05D005174 ORTHO05D006784 1.6e-124 449.9 318 76.1
Dinv40398 Davidia involucrata HOM05D005174 ORTHO05D006784 1.1e-120 437.2 320 69.7
CSS0047682 Camellia sinensis var. sinensis HOM05D005174 ORTHO05D006784 2.1e-119 433.0 318 67.9
CSS0048949 Camellia sinensis var. sinensis HOM05D005174 ORTHO05D006784 1.0e-118 430.6 318 67.3
Cc01_g07610 Coffea canephora HOM05D005174 ORTHO05D006784 1.3e-113 413.7 318 66.7
GSVIVG01008896001 Vitis vinifera HOM05D005174 ORTHO05D006784 2.9e-113 412.5 322 67.1
Eucgr.H00450 Eucalyptus grandis HOM05D005174 ORTHO05D006784 2.4e-112 409.5 320 67.2
Gorai.005G090400 Gossypium raimondii HOM05D005174 ORTHO05D006784 1.6e-111 406.8 322 66.8
Oeu047941.1 Olea europaea HOM05D005174 ORTHO05D006784 4.6e-111 405.2 328 66.2
COL.COLO4_12205 Corchorus olitorius HOM05D005174 ORTHO05D006784 1.0e-110 404.1 322 64.9
MSTRG.1457 Avicennia marina HOM05D005174 ORTHO05D006784 1.5e-109 400.2 320 66.6
HanXRQChr02g0041151 Helianthus annuus HOM05D005174 ORTHO05D006784 4.3e-109 398.7 320 65.3
Prupe.1G501000 Prunus persica HOM05D005174 ORTHO05D006784 7.4e-109 397.9 320 66.9
Thecc.08G122000 Theobroma cacao HOM05D005174 ORTHO05D006784 9.6e-109 397.5 322 65.8
Gorai.009G244400 Gossypium raimondii HOM05D005174 ORTHO05D006784 1.6e-108 396.7 322 66.1
Migut.C01145 Erythranthe guttata HOM05D005174 ORTHO05D006784 2.1e-108 396.4 321 66.7
Cpa.g.sc36.39 Carica papaya HOM05D005174 ORTHO05D006784 3.7e-108 395.6 307 67.4
Gohir.A05G233700 Gossypium hirsutum HOM05D005174 ORTHO05D006784 6.2e-108 394.8 322 66.5
QL09p035644 Quercus lobata HOM05D005174 ORTHO05D006784 6.2e-108 394.8 310 66.8
TAR381G1686 Trochodendron aralioides HOM05D005174 ORTHO05D006784 8.1e-108 394.4 319 65.8
Lalb_Chr08g0241531 Lupinus albus HOM05D005174 ORTHO05D006784 1.4e-107 393.7 315 65.1
ECA232G2439 Erigeron canadensis HOM05D005174 ORTHO05D006784 2.4e-107 392.9 321 64.2
SGA_v2.0_scaffold52G18977 Striga asiatica HOM05D005174 ORTHO05D006784 2.4e-107 392.9 321 65.7
Duzib093G0119 Durio zibethinus HOM05D005174 ORTHO05D006784 5.3e-107 391.7 322 64.6
Glyma.06G111200 Glycine max HOM05D005174 ORTHO05D006784 1.2e-106 390.6 315 65.7
Gohir.D02G080900 Gossypium hirsutum HOM05D005174 ORTHO05D006784 1.2e-106 390.6 322 65.2
arahy.Tifrunner.gnm1.ann1.3YB7R6 Arachis hypogaea HOM05D005174 ORTHO05D006784 1.5e-106 390.2 317 65.3
Gohir.D05G236100 Gossypium hirsutum HOM05D005174 ORTHO05D006784 2.6e-106 389.4 322 65.2
Psat5g120840 Pisum sativum HOM05D005174 ORTHO05D006784 3.4e-106 389.0 321 65.4
VMungo1309G0682 Vigna mungo HOM05D005174 ORTHO05D006784 3.4e-106 389.0 324 64.2
Duzib116G0013 Durio zibethinus HOM05D005174 ORTHO05D006784 4.5e-106 388.7 335 62.1
TWI56G0960 Tripterygium wilfordii HOM05D005174 ORTHO05D006784 7.6e-106 387.9 313 63.9
Ca_13578_v3 Cicer arietinum L. HOM05D005174 ORTHO05D006784 1.0e-105 387.5 321 65.7
PGR044G1014 Punica granatum HOM05D005174 ORTHO05D006784 1.7e-105 386.7 322 62.1
SalBow7G2597 Salvia bowleyana HOM05D005174 ORTHO05D006784 1.1e-104 384.0 361 59.0
TPR.G22992 Trifolium pratense HOM05D005174 ORTHO05D006784 1.1e-104 384.0 325 64.3
Potri.005G175900 Populus trichocarpa HOM05D005174 ORTHO05D006784 1.4e-104 383.6 321 63.6
Nn5g28198 Nelumbo nucifera HOM05D005174 ORTHO05D006784 3.2e-104 382.5 315 63.2
CANSAT25G0921 Cannabis sativa HOM05D005174 ORTHO05D006784 5.5e-104 381.7 321 62.6
Hund24749 Selenicereus undatus HOM05D005174 ORTHO05D006784 9.3e-104 380.9 324 59.6
Aqoxy6G00176 Aquilegia oxysepala HOM05D005174 ORTHO05D006784 1.2e-103 380.6 315 63.8
Manes.02G161600 Manihot esculenta HOM05D005174 ORTHO05D006784 1.2e-103 380.6 322 62.4
Lj5g0013947 Lotus japonicus HOM05D005174 ORTHO05D006784 2.7e-103 379.4 321 64.5
Cfa015995 Carpinus fangiana HOM05D005174 ORTHO05D006784 3.5e-103 379.0 311 64.6
Phvul.009G123200 Phaseolus vulgaris HOM05D005174 ORTHO05D006784 3.5e-103 379.0 327 62.7
Lj1g0014313 Lotus japonicus HOM05D005174 ORTHO05D006784 4.6e-103 378.6 320 64.7
vmacro00818 Vaccinium macrocarpon HOM05D005174 ORTHO05D006784 6.0e-103 378.3 297 68.0
PSO782G4297 Papaver somniferum HOM05D005174 ORTHO05D006784 1.8e-102 376.7 322 63.4
Medtr3g072620 Medicago truncatula HOM05D005174 ORTHO05D006784 2.3e-102 376.3 318 64.8
Sc01g0001320 Simmondsia chinensis HOM05D005174 ORTHO05D006784 2.3e-102 376.3 316 61.4
Lsat_1_v5_gn_4_135460 Lactuca sativa HOM05D005174 ORTHO05D006784 8.7e-102 374.4 342 59.4
Glyma.14G147200 Glycine max HOM05D005174 ORTHO05D006784 1.1e-101 374.0 322 60.9
Lalb_Chr17g0343851 Lupinus albus HOM05D005174 ORTHO05D006784 1.1e-101 374.0 324 61.7
CiPaw.05G223800 Carya illinoinensis HOM05D005174 ORTHO05D006784 9.6e-101 370.9 310 63.2
Sed0012589 Sechium edule HOM05D005174 ORTHO05D006784 1.3e-100 370.5 315 59.4
CsaV3_4G028370 Cucumis sativus L. HOM05D005174 ORTHO05D006784 1.6e-100 370.2 315 59.7
FvH4_2g26610 Fragaria vesca HOM05D005174 ORTHO05D006784 4.8e-100 368.6 318 62.3
FAN24G0526 Fragaria x ananassa HOM05D005174 ORTHO05D006784 4.8e-100 368.6 318 62.3
THA.LOC104806814 Tarenaya hassleriana HOM05D005174 ORTHO05D006784 4.8e-100 368.6 320 61.2
MD15G1352500 Malus domestica HOM05D005174 ORTHO05D006784 6.3e-100 368.2 319 62.1
Eucgr.L02995 Eucalyptus grandis HOM05D005174 ORTHO05D006784 8.2e-100 367.9 318 62.6
RcHm_v2.0_Chr6g0295461 Rosa chinensis HOM05D005174 ORTHO05D006784 8.2e-100 367.9 318 62.3
PSO170G4538 Papaver somniferum HOM05D005174 ORTHO05D006784 1.1e-99 367.5 322 61.8
ClCG11G015640 Citrullus lanatus HOM05D005174 ORTHO05D006784 1.4e-99 367.1 315 58.7
arahy.Tifrunner.gnm1.ann1.Z8FB5F Arachis hypogaea HOM05D005174 ORTHO05D006784 9.0e-99 364.4 372 55.6
Ciclev10001813m.g Citrus clementina HOM05D005174 ORTHO05D006784 1.0e-97 360.9 318 59.1
AUR62042433 Chenopodium quinoa HOM05D005174 ORTHO05D006784 6.5e-97 358.2 327 58.7
Actinidia29457 Actinidia chinensis HOM05D005174 ORTHO05D006784 1.4e-96 357.1 319 62.1
Sp1g33700 Schrenkiella parvula HOM05D005174 ORTHO05D006784 4.6e-95 352.1 320 61.2
RhsimUnG0094500 Rhododendron simsii HOM05D005174 ORTHO05D006784 1.3e-94 350.5 327 60.2
Psat2g085920 Pisum sativum HOM05D005174 ORTHO05D006784 3.9e-94 349.0 372 54.3
Aa31LG6G9210 Aethionema arabicum HOM05D005174 ORTHO05D006784 1.5e-93 347.1 311 59.2
BraA08t32633Z Brassica rapa HOM05D005174 ORTHO05D006784 2.5e-93 346.3 324 58.3
ATR0193G024 Amborella trichopoda HOM05D005174 ORTHO05D006784 7.4e-93 344.7 315 58.4
BcaB04g17581 Brassica carinata HOM05D005174 ORTHO05D006784 7.4e-93 344.7 318 59.4
A08p06300 Brassica napus HOM05D005174 ORTHO05D006784 9.7e-93 344.4 324 58.6
BcaC07g37283 Brassica carinata HOM05D005174 ORTHO05D006784 1.6e-92 343.6 324 57.7
C08p07120 Brassica napus HOM05D005174 ORTHO05D006784 1.6e-92 343.6 324 57.7
BolC8t47557H Brassica oleracea HOM05D005174 ORTHO05D006784 1.6e-92 343.6 324 57.7
AUR62018164 Chenopodium quinoa HOM05D005174 ORTHO05D006784 2.8e-92 342.8 343 55.4
AL1G52500 Arabidopsis lyrata HOM05D005174 ORTHO05D006784 6.3e-92 341.7 321 58.9
AT1G44835 Arabidopsis thaliana HOM05D005174 ORTHO05D006784 1.1e-91 340.9 320 59.1
Carub.0001s3538 Capsella rubella HOM05D005174 ORTHO05D006784 1.8e-91 340.1 320 58.4
FAN20G1758 Fragaria x ananassa HOM05D005174 ORTHO05D006784 1.8e-91 340.1 318 59.4
Sabra05G0132500 Salix brachista HOM05D005174 ORTHO05D006784 2.4e-91 339.7 378 52.9
BcaC08g42881 Brassica carinata HOM05D005174 ORTHO05D006784 1.5e-90 337.0 318 56.9
CARHR036100 Cardamine hirsuta HOM05D005174 ORTHO05D006784 2.6e-90 336.3 318 57.9
BolC6t35233H Brassica oleracea HOM05D005174 ORTHO05D006784 7.7e-90 334.7 321 57.9
Thhalv10004660m.g Eutrema salsugineum HOM05D005174 ORTHO05D006784 1.0e-89 334.3 320 58.8
Thhalv10021201m.g Eutrema salsugineum HOM05D005174 ORTHO05D006784 1.0e-89 334.3 320 58.1
CDE05G2191 Ceratophyllum demersum HOM05D005174 ORTHO05D006784 1.3e-89 334.0 316 54.7
Atru.chr13.1416 Acer truncatum HOM05D005174 ORTHO05D006784 2.2e-89 333.2 298 58.7
C06p00970 Brassica napus HOM05D005174 ORTHO05D006784 5.0e-89 332.0 320 56.6
A10p07300 Brassica napus HOM05D005174 ORTHO05D006784 6.5e-89 331.6 320 57.2
BraSC36t46091Z Brassica rapa HOM05D005174 ORTHO05D006784 6.5e-89 331.6 320 57.2
EL10Ac2g03105 Beta vulgaris HOM05D005174 ORTHO05D006784 5.5e-88 328.6 306 58.2
Sc01g0001280 Simmondsia chinensis HOM05D005174 ORTHO05D006784 5.1e-86 322.0 266 62.8
Os02g0767700 Oryza sativa ssp. japonica HOM05D005174 ORTHO05D006784 4.4e-85 318.9 312 57.4
Zm00001eb193560 Zea mays HOM05D005174 ORTHO05D006784 5.3e-83 312.0 320 56.6
MBI03_g33021_MAGBIO Magnolia biondii HOM05D005174 ORTHO05D006784 1.3e-81 307.4 271 59.8
DCAR_017401 Daucus carota HOM05D005174 ORTHO05D006784 4.2e-80 302.4 206 73.8
FAN27G1282 Fragaria x ananassa HOM05D005174 ORTHO05D006784 3.0e-78 296.2 314 54.1
MELO3C032634.2 Cucumis melo HOM05D005174 ORTHO05D006784 4.5e-74 282.3 304 52.0
unitig_82.g26987 Utricularia gibba HOM05D005174 ORTHO05D006784 1.3e-73 280.8 311 54.3
FAN15G0922 Fragaria x ananassa HOM05D005174 ORTHO05D006784 1.1e-72 277.7 357 50.1
Gohir.A02G073700 Gossypium hirsutum HOM05D005174 ORTHO05D006784 1.4e-67 260.8 322 49.4
Ah.10g032020 Amaranthus hybridus HOM05D005174 ORTHO05D006784 2.7e-66 256.5 325 46.8
SEGI_02373 Sequoiadendron giganteum HOM05D005174 ORTHO05D006784 3.5e-66 256.1 272 53.7
Pp3c18_22250 Physcomitrium patens HOM05D005174 ORTHO05D006784 6.5e-65 251.9 318 48.4
Mapoly0010s0001 Marchantia polymorpha HOM05D005174 ORTHO05D006784 2.7e-63 246.5 310 47.1
HPP92_001042 Vanilla planifolia HOM05D005174 ORTHO05D006784 1.2e-53 214.5 320 41.2
Lj7A337T25 Lonicera japonica HOM05D005174 ORTHO05D006784 4.5e-50 202.6 178 59.6
Haze_00470 Corylus avellana HOM05D005174 ORTHO05D006784 1.1e-43 181.4 110 85.5
Cre10.g425950 Chlamydomonas reinhardtii HOM05D005174 ORTHO05D006784 8.6e-41 171.8 319 34.8
PRCOL_00005180 Prasinoderma coloniale HOM05D005174 ORTHO05D006784 5.2e-38 162.5 179 47.5
FAN20G0512 Fragaria x ananassa HOM05D005174 ORTHO05D006784 5.8e-37 159.1 267 41.6
MD08G1166300 Malus domestica HOM05D005174 ORTHO05D006784 6.4e-36 155.6 110 72.7
Hund16845 Selenicereus undatus HOM05D005174 ORTHO05D006784 9.2e-35 151.8 105 71.4
Haze_00471 Corylus avellana HOM05D005174 ORTHO05D006784 7.3e-32 142.1 182 45.6
Sabra15G0076900 Salix brachista HOM05D000453 ORTHO05D000387 9.5e-32 141.7 135 58.5
SMO200G0142 Selaginella moellendorffii HOM05D000188 ORTHO05D007139 2.9e-28 130.2 249 38.6
Ca_03754_v3 Cicer arietinum L. HOM05D005174 ORTHO05D006784 2.4e-22 110.5 100 59.0
Glyma.04G251502 Glycine max HOM05D005174 ORTHO05D006784 7.3e-16 89.0 106 46.2
Ca_03755_v3 Cicer arietinum L. HOM05D005174 ORTHO05D006784 3.6e-15 86.7 104 48.1
arahy.Tifrunner.gnm1.ann1.032V6W Arachis hypogaea HOM05D005174 ORTHO05D015215 3.1e-14 83.6 71 63.4
arahy.Tifrunner.gnm1.ann1.PAU1NR Arachis hypogaea HOM05D005174 ORTHO05D015215 3.1e-14 83.6 71 63.4
arahy.Tifrunner.gnm1.ann1.RE5YQ2 Arachis hypogaea HOM05D005174 ORTHO05D015215 3.1e-14 83.6 71 63.4
CiPaw.05G223900 Carya illinoinensis HOM05D005174 ORTHO05D006784 1.5e-13 81.3 94 45.7
Sabra02G0067100 Salix brachista HOM05D005174 ORTHO05D006784 2.6e-13 80.5 79 54.4
Cfa010764 Carpinus fangiana HOM05D005174 ORTHO05D006784 3.8e-12 76.6 96 47.9
Duzib041G0272 Durio zibethinus HOM05D005174 ORTHO05D015215 4.9e-12 76.3 49 75.5
arahy.Tifrunner.gnm1.ann1.S56SQA Arachis hypogaea HOM05D005174 ORTHO05D015215 8.4e-12 75.5 67 56.7
arahy.Tifrunner.gnm1.ann1.W2W6PZ Arachis hypogaea HOM05D005174 ORTHO05D015215 8.4e-12 75.5 45 80.0
SEGI_30371 Sequoiadendron giganteum HOM05D005174 ORTHO05D050453 8.4e-12 75.5 53 69.8
Potri.002G085700 Populus trichocarpa HOM05D005174 ORTHO05D050453 4.6e-10 69.7 54 64.8
Oeu059427.1 Olea europaea HOM05D005174 ORTHO05D006784 4.3e-08 63.2 52 57.7
MBI04_g30787_MAGBIO Magnolia biondii HOM05D005174 ORTHO05D006784 7.3e-08 62.4 75 40.0
FAN24G2292 Fragaria x ananassa HOM05D005174 ORTHO05D006784 3.6e-07 60.1 129 34.9
arahy.Tifrunner.gnm1.ann1.9F26EH Arachis hypogaea HOM05D005174 ORTHO05D015215 1.1e-06 58.5 51 60.8
SGA_v2.0_scaffold24G10473 Striga asiatica HOM05D021410 ORTHO05D401290 1.1e-06 58.5 36 77.8


User provided reference genes

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