Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc06g059830.3 Solanum lycopersicum HOM05D031591 ORTHO05D003378 1.1e-62 243.0 120 100.0
PGSC0003DMG400043006 Solanum tuberosum HOM05D031591 ORTHO05D003378 2.9e-50 201.8 120 84.2
Sopen06g019870 Solanum pennellii HOM05D010533 ORTHO05D003378 4.2e-25 118.2 96 63.5
Nitab4.5_0001821g0020 Nicotiana tabacum HOM05D000275 ORTHO05D003378 6.1e-24 114.4 116 54.3
Solyc06g059790.4 Solanum lycopersicum HOM05D010533 ORTHO05D003378 9.7e-22 107.1 79 67.1
Nitab4.5_0010416g0010 Nicotiana tabacum HOM05D000275 ORTHO05D003378 3.7e-21 105.1 102 53.9
Sopen06g019880 Solanum pennellii HOM05D031591 ORTHO05D003378 2.0e-19 99.4 119 54.6
Peaxi162Scf00033g00043 Petunia axillaris HOM05D000275 ORTHO05D003378 7.7e-19 97.4 122 47.5
Migut.M01357 Erythranthe guttata HOM05D010533 ORTHO05D003378 6.8e-15 84.3 111 37.8
SGA_v2.0_scaffold4G01900 Striga asiatica HOM05D000275 ORTHO05D003378 1.2e-14 83.6 120 39.2
Peaxi162Scf00066g00202 Petunia axillaris HOM05D010533 ORTHO05D003378 3.4e-14 82.0 110 40.0
Oeu043634.1 Olea europaea HOM05D010533 ORTHO05D003378 4.4e-14 81.6 107 38.3
PGSC0003DMG400030768 Solanum tuberosum HOM05D031591 ORTHO05D003378 5.7e-14 81.3 131 38.2
SalBow8G5319 Salvia bowleyana HOM05D010533 ORTHO05D003378 6.3e-13 77.8 103 35.9
PGSC0003DMG400041307 Solanum tuberosum HOM05D010533 ORTHO05D003378 2.4e-12 75.9 111 36.0
MSTRG.7190 Avicennia marina HOM05D000275 ORTHO05D003378 7.0e-12 74.3 108 36.1
CAN.G650.39 Capsicum annuum HOM05D010533 ORTHO05D003378 1.6e-11 73.2 108 40.7
CiPaw.09G101100 Carya illinoinensis HOM05D006508 ORTHO05D003378 2.7e-11 72.4 83 47.0
Ca_03265_v3 Cicer arietinum L. HOM05D000275 ORTHO05D000181 2.7e-11 72.4 120 36.7
COL.COLO4_17112 Corchorus olitorius HOM05D000275 ORTHO05D000181 5.9e-11 71.2 108 38.0
Haze_06883 Corylus avellana HOM05D006508 ORTHO05D003378 7.7e-11 70.9 113 38.9
Lj3g0012102 Lotus japonicus HOM05D000275 ORTHO05D000181 1.0e-10 70.5 106 34.9
VMungo1080G1094 Vigna mungo HOM05D000275 ORTHO05D000181 1.0e-10 70.5 107 36.4
Actinidia12821 Actinidia chinensis HOM05D000275 ORTHO05D003378 1.3e-10 70.1 122 38.5
Glyma.15G265900 Glycine max HOM05D000275 ORTHO05D000181 1.3e-10 70.1 120 35.8
Lj3g0025801 Lotus japonicus HOM05D000275 ORTHO05D000181 1.3e-10 70.1 113 32.7
Eucgr.H04731 Eucalyptus grandis HOM05D000275 ORTHO05D000181 1.7e-10 69.7 119 34.5
CSS0001255 Camellia sinensis var. sinensis HOM05D000275 ORTHO05D000181 2.3e-10 69.3 119 32.8
CiPaw.09G100900 Carya illinoinensis HOM05D006508 ORTHO05D003378 2.3e-10 69.3 110 37.3
Prupe.2G000900 Prunus persica HOM05D000275 ORTHO05D000181 2.9e-10 68.9 114 35.1
Cfa000104 Carpinus fangiana HOM05D006508 ORTHO05D003378 3.8e-10 68.6 119 37.0
Haze_06882 Corylus avellana HOM05D006508 ORTHO05D003378 5.0e-10 68.2 112 38.4
Glyma.08G161700 Glycine max HOM05D000275 ORTHO05D000181 8.6e-10 67.4 90 37.8
arahy.Tifrunner.gnm1.ann1.EB1W4P Arachis hypogaea HOM05D000275 ORTHO05D000181 1.1e-09 67.0 108 35.2
SGA_v2.0_scaffold95G28758 Striga asiatica HOM05D000275 ORTHO05D000181 1.1e-09 67.0 97 41.2
Medtr2g062600 Medicago truncatula HOM05D000275 ORTHO05D000181 1.5e-09 66.6 113 35.4
TPR.G17317 Trifolium pratense HOM05D000275 ORTHO05D000181 1.5e-09 66.6 117 32.5
BraA03t12807Z Brassica rapa HOM05D000275 ORTHO05D000181 1.9e-09 66.2 114 33.3
Phvul.005G045100 Phaseolus vulgaris HOM05D000275 ORTHO05D000181 1.9e-09 66.2 119 32.8
MBI04_g37006_MAGBIO Magnolia biondii HOM05D000275 ORTHO05D000181 2.5e-09 65.9 117 36.8
Peaxi162Scf00008g00288 Petunia axillaris HOM05D010533 ORTHO05D003378 3.3e-09 65.5 95 38.9
Aa31LG5G22790 Aethionema arabicum HOM05D000275 ORTHO05D003378 4.2e-09 65.1 113 33.6
A03p36370 Brassica napus HOM05D000275 ORTHO05D000181 4.2e-09 65.1 112 33.0
A03p36390 Brassica napus HOM05D000275 ORTHO05D000181 4.2e-09 65.1 112 33.0
DCAR_015724 Daucus carota HOM05D000275 ORTHO05D000181 4.2e-09 65.1 108 32.4
PGSC0003DMG400016102 Solanum tuberosum HOM05D000275 ORTHO05D000181 4.2e-09 65.1 109 34.9
SalBow4G2860 Salvia bowleyana HOM05D000275 ORTHO05D000181 5.5e-09 64.7 119 34.5
SGA_v2.0_scaffold7G03794 Striga asiatica HOM05D005176 ORTHO05D006482 5.5e-09 64.7 90 37.8
MSTRG.4993 Avicennia marina HOM05D000275 ORTHO05D000181 9.5e-09 63.9 113 32.7
BolC3t16669H Brassica oleracea HOM05D000275 ORTHO05D000181 9.5e-09 63.9 115 30.4
Psat1g130320 Pisum sativum HOM05D000275 ORTHO05D000181 9.5e-09 63.9 118 32.2
SalBow8G2857 Salvia bowleyana HOM05D006508 ORTHO05D003378 9.5e-09 63.9 84 33.3
SEGI_29008 Sequoiadendron giganteum HOM05D000275 ORTHO05D000181 9.5e-09 63.9 110 29.1
Aa31LG5G22780 Aethionema arabicum HOM05D000275 ORTHO05D003378 1.2e-08 63.5 110 33.6
BcaC01g04195 Brassica carinata HOM05D000275 ORTHO05D000181 1.2e-08 63.5 114 31.6
CSS0009125 Camellia sinensis var. sinensis HOM05D000275 ORTHO05D003378 1.6e-08 63.2 82 35.4
ECA248G0116 Erigeron canadensis HOM05D000275 ORTHO05D003378 1.6e-08 63.2 107 35.5
Sopen08g021470 Solanum pennellii HOM05D000275 ORTHO05D000181 1.6e-08 63.2 112 31.2
ECA240G2680 Erigeron canadensis HOM05D006508 ORTHO05D003378 2.1e-08 62.8 113 34.5
FAN06G4638 Fragaria x ananassa HOM05D000275 ORTHO05D000181 2.1e-08 62.8 110 33.6
Manes.16G001900 Manihot esculenta HOM05D006508 ORTHO05D003378 2.1e-08 62.8 96 36.5
Oeu024945.1 Olea europaea HOM05D000275 ORTHO05D000181 2.1e-08 62.8 110 33.6
C03p43980 Brassica napus HOM05D000275 ORTHO05D000181 2.8e-08 62.4 112 31.2
FAN06G0058 Fragaria x ananassa HOM05D000275 ORTHO05D000181 2.8e-08 62.4 110 33.6
QL02p077688 Quercus lobata HOM05D006508 ORTHO05D003378 2.8e-08 62.4 90 36.7
EL10Ac1g02050 Beta vulgaris HOM05D000275 ORTHO05D000181 3.6e-08 62.0 119 32.8
CSS0012199 Camellia sinensis var. sinensis HOM05D000275 ORTHO05D003378 3.6e-08 62.0 120 31.7
CiPaw.09G101000 Carya illinoinensis HOM05D000275 ORTHO05D003378 3.6e-08 62.0 117 37.6
Lsat_1_v5_gn_1_89881 Lactuca sativa HOM05D000275 ORTHO05D000181 3.6e-08 62.0 119 31.1
Lalb_Chr07g0188511 Lupinus albus HOM05D000275 ORTHO05D003378 4.7e-08 61.6 114 30.7
Aa31LG5G22760 Aethionema arabicum HOM05D000275 ORTHO05D003378 6.1e-08 61.2 110 31.8
Dinv43951 Davidia involucrata HOM05D000275 ORTHO05D000181 6.1e-08 61.2 119 31.1
arahy.Tifrunner.gnm1.ann1.JFR3PY Arachis hypogaea HOM05D000275 ORTHO05D000181 1.0e-07 60.5 88 36.4
CSS0031389 Camellia sinensis var. sinensis HOM05D000275 ORTHO05D003378 1.0e-07 60.5 120 30.8
Solyc09g150148.1 Solanum lycopersicum HOM05D039133 ORTHO05D030867 1.0e-07 60.5 81 33.3
HanXRQChr03g0089201 Helianthus annuus HOM05D000275 ORTHO05D000181 1.4e-07 60.1 113 35.4
Solyc08g067530.1 Solanum lycopersicum HOM05D000275 ORTHO05D000181 1.4e-07 60.1 112 30.4
CAN.G380.1 Capsicum annuum HOM05D039133 ORTHO05D030867 1.8e-07 59.7 81 32.1
Lalb_Chr07g0188481 Lupinus albus HOM05D000275 ORTHO05D003378 2.3e-07 59.3 113 29.2
TPR.G25293 Trifolium pratense HOM05D006508 ORTHO05D003378 2.3e-07 59.3 115 32.2
TAR636G0501 Trochodendron aralioides HOM05D000275 ORTHO05D000181 2.3e-07 59.3 85 37.6
COL.COLO4_03647 Corchorus olitorius HOM05D006508 ORTHO05D003378 3.0e-07 58.9 82 34.1
Eucgr.D01379 Eucalyptus grandis HOM05D000275 ORTHO05D003378 3.0e-07 58.9 93 31.2
Solyc01g081600.3 Solanum lycopersicum HOM05D000275 ORTHO05D000181 3.0e-07 58.9 116 31.9
TPR.G4368 Trifolium pratense HOM05D006508 ORTHO05D003378 3.0e-07 58.9 118 32.2
Cc04_g11080 Coffea canephora HOM05D000275 ORTHO05D000181 4.0e-07 58.5 120 33.3
COL.COLO4_26711 Corchorus olitorius HOM05D006508 ORTHO05D003378 4.0e-07 58.5 113 31.0
FvH4_7g10020 Fragaria vesca HOM05D000275 ORTHO05D000181 4.0e-07 58.5 110 32.7
Nn2g13360 Nelumbo nucifera HOM05D000275 ORTHO05D003378 4.0e-07 58.5 90 35.6
PGSC0003DMG400025539 Solanum tuberosum HOM05D000275 ORTHO05D000181 4.0e-07 58.5 99 36.4
TPR.G13489 Trifolium pratense HOM05D006508 ORTHO05D003378 4.0e-07 58.5 118 32.2
Nn5g26859 Nelumbo nucifera HOM05D000275 ORTHO05D000181 5.2e-07 58.2 113 31.9
Prupe.4G217000 Prunus persica HOM05D000275 ORTHO05D003378 5.2e-07 58.2 83 37.3
Sopen01g033150 Solanum pennellii HOM05D000275 ORTHO05D000181 5.2e-07 58.2 108 33.3
Sopen08g021450 Solanum pennellii HOM05D000275 ORTHO05D000181 5.2e-07 58.2 114 37.7
TPR.G16537 Trifolium pratense HOM05D006508 ORTHO05D003378 5.2e-07 58.2 115 31.3
Aa31LG5G22840 Aethionema arabicum HOM05D006508 ORTHO05D003378 6.8e-07 57.8 84 33.3
Migut.J00047 Erythranthe guttata HOM05D000275 ORTHO05D000181 6.8e-07 57.8 106 31.1
BcaNung02167 Brassica carinata HOM05D000275 ORTHO05D000181 8.9e-07 57.4 110 33.6
COL.COLO4_12419 Corchorus olitorius HOM05D000275 ORTHO05D000181 8.9e-07 57.4 99 36.4
SalBow8G3386 Salvia bowleyana HOM05D006508 ORTHO05D003378 8.9e-07 57.4 84 32.1
TPR.G25278 Trifolium pratense HOM05D006508 ORTHO05D003378 8.9e-07 57.4 116 31.0
COL.COLO4_26709 Corchorus olitorius HOM05D006508 ORTHO05D003378 1.2e-06 57.0 112 30.4
DCAR_003257 Daucus carota HOM05D006508 ORTHO05D003378 1.2e-06 57.0 107 30.8
DCAR_013213 Daucus carota HOM05D006508 ORTHO05D003378 1.2e-06 57.0 107 30.8
Nitab4.5_0004082g0030 Nicotiana tabacum HOM05D010533 ORTHO05D003378 1.2e-06 57.0 47 55.3
Prupe.4G013200 Prunus persica HOM05D000275 ORTHO05D003378 1.2e-06 57.0 83 34.9
CAN.G1361.15 Capsicum annuum HOM05D000275 ORTHO05D000181 1.5e-06 56.6 110 30.0
MD01G1079700 Malus domestica HOM05D000275 ORTHO05D000181 1.5e-06 56.6 111 34.2
SEGI_03035 Sequoiadendron giganteum HOM05D000275 ORTHO05D000181 1.5e-06 56.6 112 29.5
PGSC0003DMG400025538 Solanum tuberosum HOM05D000275 ORTHO05D000181 1.5e-06 56.6 122 32.0
TWI38G0468 Tripterygium wilfordii HOM05D000275 ORTHO05D003378 1.5e-06 56.6 105 31.4
Duzib138G0524 Durio zibethinus HOM05D000275 ORTHO05D000181 2.0e-06 56.2 111 34.2
Lsat_1_v5_gn_4_178380 Lactuca sativa HOM05D000275 ORTHO05D000181 2.6e-06 55.8 109 34.9
Lalb_Chr07g0188461 Lupinus albus HOM05D000275 ORTHO05D003378 2.6e-06 55.8 115 28.7
CANSAT56G3402 Cannabis sativa HOM05D006508 ORTHO05D003378 3.4e-06 55.5 95 35.8
AUR62029718 Chenopodium quinoa HOM05D000275 ORTHO05D000181 3.4e-06 55.5 114 31.6
AUR62029719 Chenopodium quinoa HOM05D000275 ORTHO05D000181 3.4e-06 55.5 114 31.6
Lalb_Chr07g0188521 Lupinus albus HOM05D000275 ORTHO05D003378 3.4e-06 55.5 113 28.3
TPR.G14124 Trifolium pratense HOM05D000275 ORTHO05D000181 3.4e-06 55.5 120 32.5
unitig_22.g6600 Utricularia gibba HOM05D000275 ORTHO05D000181 3.4e-06 55.5 113 32.7
Ah.14g086910 Amaranthus hybridus HOM05D000275 ORTHO05D009916 4.4e-06 55.1 120 34.2
AUR62029721 Chenopodium quinoa HOM05D000275 ORTHO05D000181 4.4e-06 55.1 120 34.2
Migut.M01356 Erythranthe guttata HOM05D000275 ORTHO05D003378 4.4e-06 55.1 109 26.6
Medtr3g046580 Medicago truncatula HOM05D006508 ORTHO05D003378 4.4e-06 55.1 113 31.9
Aa31LG5G22770 Aethionema arabicum HOM05D000275 ORTHO05D003378 5.7e-06 54.7 68 35.3
Nitab4.5_0007494g0040 Nicotiana tabacum HOM05D000275 ORTHO05D000181 5.7e-06 54.7 111 31.5
Peaxi162Scf01343g00142 Petunia axillaris HOM05D000275 ORTHO05D000181 5.7e-06 54.7 119 30.3
Psat6g066360 Pisum sativum HOM05D006508 ORTHO05D003378 5.7e-06 54.7 117 29.1
PGSC0003DMG400015092 Solanum tuberosum HOM05D000275 ORTHO05D000181 5.7e-06 54.7 96 31.2
Cfa000131 Carpinus fangiana HOM05D006508 ORTHO05D003378 7.5e-06 54.3 111 35.1
COL.COLO4_06294 Corchorus olitorius HOM05D002290 ORTHO05D002532 7.5e-06 54.3 112 35.7
COL.COLO4_26721 Corchorus olitorius HOM05D006508 ORTHO05D003378 7.5e-06 54.3 109 30.3
Gohir.D09G067950 Gossypium hirsutum HOM05D000275 ORTHO05D003378 7.5e-06 54.3 82 32.9
Manes.02G187100 Manihot esculenta HOM05D000275 ORTHO05D000181 7.5e-06 54.3 90 36.7
Medtr3g046540 Medicago truncatula HOM05D006508 ORTHO05D003378 7.5e-06 54.3 113 32.7
PGSC0003DMG400031127 Solanum tuberosum HOM05D000275 ORTHO05D000181 7.5e-06 54.3 116 30.2
Medtr3g046530 Medicago truncatula HOM05D006508 ORTHO05D003378 9.8e-06 53.9 113 31.9
Hund05143 Selenicereus undatus HOM05D000275 ORTHO05D000181 9.8e-06 53.9 121 30.6


User provided reference genes

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