Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc06g054280.1 Solanum lycopersicum HOM05D005221 ORTHO05D006355 9.1e-117 423.7 232 100.0
Sopen06g019400 Solanum pennellii HOM05D005221 ORTHO05D006355 1.9e-114 416.0 232 97.8
PGSC0003DMG400011822 Solanum tuberosum HOM05D005221 ORTHO05D006355 2.0e-111 406.0 232 96.1
CAN.G873.5 Capsicum annuum HOM05D005221 ORTHO05D006355 1.4e-96 356.7 233 85.0
Nitab4.5_0000321g0080 Nicotiana tabacum HOM05D005221 ORTHO05D006355 4.9e-78 295.0 232 74.1
Peaxi162Scf00642g00022 Petunia axillaris HOM05D005221 ORTHO05D006355 3.0e-75 285.8 242 73.6
Nitab4.5_0000260g0100 Nicotiana tabacum HOM05D005221 ORTHO05D006355 8.6e-67 257.7 236 64.0
Peaxi162Scf00437g00052 Petunia axillaris HOM05D005221 ORTHO05D006355 2.5e-66 256.1 243 62.6
Nitab4.5_0001545g0020 Nicotiana tabacum HOM05D005221 ORTHO05D006355 7.3e-66 254.6 236 62.7
CAN.G668.8 Capsicum annuum HOM05D005221 ORTHO05D006355 2.8e-65 252.7 247 64.4
Nitab4.5_0007609g0020 Nicotiana tabacum HOM05D005221 ORTHO05D006355 1.5e-63 246.9 201 74.1
Oeu037551.1 Olea europaea HOM05D005221 ORTHO05D006355 7.6e-63 244.6 240 57.1
TWI53G0458 Tripterygium wilfordii HOM05D005221 ORTHO05D006355 5.4e-61 238.4 245 60.0
QL06p003360 Quercus lobata HOM05D005221 ORTHO05D006355 7.1e-61 238.0 244 61.1
PGSC0003DMG400031851 Solanum tuberosum HOM05D005221 ORTHO05D006355 1.2e-60 237.3 232 64.2
Sopen09g030550 Solanum pennellii HOM05D005221 ORTHO05D006355 2.3e-59 233.0 244 62.7
CSS0023930 Camellia sinensis var. sinensis HOM05D005221 ORTHO05D006355 6.6e-59 231.5 240 57.5
Solyc09g075740.1 Solanum lycopersicum HOM05D005221 ORTHO05D006355 1.9e-58 229.9 241 61.4
Potri.010G090700 Populus trichocarpa HOM05D005221 ORTHO05D006355 5.6e-58 228.4 243 60.5
Cc03_g03470 Coffea canephora HOM05D005221 ORTHO05D006355 7.3e-58 228.0 249 57.8
Cfa015617 Carpinus fangiana HOM05D005221 ORTHO05D006355 2.8e-57 226.1 237 59.5
Thecc.04G227300 Theobroma cacao HOM05D005221 ORTHO05D006355 6.2e-57 224.9 245 59.2
MSTRG.21844 Avicennia marina HOM05D005221 ORTHO05D006355 1.1e-56 224.2 235 57.0
Duzib151G0158 Durio zibethinus HOM05D005221 ORTHO05D006355 1.1e-56 224.2 243 57.6
Cpa.g.sc8.322 Carica papaya HOM05D005221 ORTHO05D006355 1.4e-56 223.8 248 57.3
Lj5g0028012 Lotus japonicus HOM05D005221 ORTHO05D006355 1.8e-56 223.4 247 56.7
Duzib212G0790 Durio zibethinus HOM05D005221 ORTHO05D006355 2.4e-56 223.0 237 59.5
FAN12G4146 Fragaria x ananassa HOM05D005221 ORTHO05D006355 2.6e-55 219.5 245 56.3
Manes.03G181200 Manihot esculenta HOM05D005221 ORTHO05D006355 3.4e-55 219.2 245 58.8
Manes.15G026700 Manihot esculenta HOM05D005221 ORTHO05D006355 7.6e-55 218.0 241 54.4
FvH4_4g15060 Fragaria vesca HOM05D005221 ORTHO05D006355 9.9e-55 217.6 242 55.8
FAN07G2107 Fragaria x ananassa HOM05D005221 ORTHO05D006355 9.9e-55 217.6 244 54.5
RcHm_v2.0_Chr4g0416801 Rosa chinensis HOM05D005221 ORTHO05D006355 9.9e-55 217.6 245 53.5
Sed0008919 Sechium edule HOM05D005221 ORTHO05D006355 1.3e-54 217.2 240 57.5
Potri.008G150300 Populus trichocarpa HOM05D005221 ORTHO05D006355 1.7e-54 216.9 244 57.4
FAN22G0945 Fragaria x ananassa HOM05D005221 ORTHO05D006355 2.2e-54 216.5 244 55.3
Sabra10G0052800 Salix brachista HOM05D005221 ORTHO05D006355 2.2e-54 216.5 243 55.6
TWI09G0254 Tripterygium wilfordii HOM05D005221 ORTHO05D006355 2.9e-54 216.1 240 56.2
Prupe.1G155500 Prunus persica HOM05D005221 ORTHO05D006355 1.4e-53 213.8 245 55.9
Sabra08G0114400 Salix brachista HOM05D005221 ORTHO05D006355 3.2e-53 212.6 244 56.6
TAR362G0899 Trochodendron aralioides HOM05D005221 ORTHO05D006355 3.2e-53 212.6 239 54.0
Actinidia23488 Actinidia chinensis HOM05D005221 ORTHO05D006355 4.2e-53 212.2 231 56.3
Duzib052G0196 Durio zibethinus HOM05D005221 ORTHO05D006355 1.6e-52 210.3 239 51.5
Glyma.10G249900 Glycine max HOM05D005221 ORTHO05D006355 2.1e-52 209.9 257 54.9
MD16G1188800 Malus domestica HOM05D005221 ORTHO05D006355 2.1e-52 209.9 236 55.1
CiPaw.02G095300 Carya illinoinensis HOM05D005221 ORTHO05D006355 4.6e-52 208.8 238 56.3
Sed0012211 Sechium edule HOM05D005221 ORTHO05D006355 6.0e-52 208.4 243 54.7
Rhsim04G0205100 Rhododendron simsii HOM05D005221 ORTHO05D006355 1.0e-51 207.6 244 52.0
TPR.G5529 Trifolium pratense HOM05D005221 ORTHO05D006355 1.3e-51 207.2 236 52.5
Phvul.007G054700 Phaseolus vulgaris HOM05D005221 ORTHO05D006355 1.7e-51 206.8 254 55.1
VMungo0720G0147 Vigna mungo HOM05D005221 ORTHO05D006355 3.0e-51 206.1 253 54.5
Ca_10924_v3 Cicer arietinum L. HOM05D005221 ORTHO05D006355 3.9e-51 205.7 240 52.9
MELO3C014491.2 Cucumis melo HOM05D005221 ORTHO05D006355 6.6e-51 204.9 240 54.6
COL.COLO4_06196 Corchorus olitorius HOM05D005221 ORTHO05D006355 1.1e-50 204.1 245 54.7
Glyma.20G143700 Glycine max HOM05D005221 ORTHO05D006355 1.1e-50 204.1 254 54.7
Nn4g26263 Nelumbo nucifera HOM05D005221 ORTHO05D006355 1.5e-50 203.8 239 51.5
Medtr1g104840 Medicago truncatula HOM05D005221 ORTHO05D006355 1.9e-50 203.4 229 53.3
Aqoxy2G03348 Aquilegia oxysepala HOM05D005221 ORTHO05D006355 2.5e-50 203.0 244 52.5
CiPaw.01G163700 Carya illinoinensis HOM05D005221 ORTHO05D006355 4.3e-50 202.2 224 58.5
Sc13g0004240 Simmondsia chinensis HOM05D005221 ORTHO05D006355 4.3e-50 202.2 255 52.5
Lj3P740T18 Lonicera japonica HOM05D005221 ORTHO05D006355 9.6e-50 201.1 234 51.7
Nn1g02242 Nelumbo nucifera HOM05D005221 ORTHO05D006355 2.8e-49 199.5 254 51.6
EL10As3g23360 Beta vulgaris HOM05D005221 ORTHO05D006355 4.8e-49 198.7 266 50.8
CsaV3_6G038280 Cucumis sativus L. HOM05D005221 ORTHO05D006355 4.8e-49 198.7 238 53.4
ClCG06G006000 Citrullus lanatus HOM05D005221 ORTHO05D006355 8.1e-49 198.0 232 55.6
Gohir.D09G216800 Gossypium hirsutum HOM05D005221 ORTHO05D006355 1.8e-48 196.8 237 52.3
Gohir.A09G214300 Gossypium hirsutum HOM05D005221 ORTHO05D006355 3.1e-48 196.1 239 53.1
DCAR_030618 Daucus carota HOM05D005221 ORTHO05D006355 5.3e-48 195.3 228 54.4
Gorai.006G237300 Gossypium raimondii HOM05D005221 ORTHO05D006355 9.0e-48 194.5 237 51.9
MD13G1188400 Malus domestica HOM05D005221 ORTHO05D006355 1.5e-47 193.7 221 53.8
Lalb_Chr06g0160581 Lupinus albus HOM05D005221 ORTHO05D006355 7.6e-47 191.4 233 55.8
Ciclev10005615m.g Citrus clementina HOM05D005221 ORTHO05D006355 2.2e-46 189.9 276 48.2
THA.LOC104802759 Tarenaya hassleriana HOM05D005221 ORTHO05D006355 1.1e-45 187.6 233 54.1
DCAR_002395 Daucus carota HOM05D005221 ORTHO05D006355 1.9e-45 186.8 232 50.9
FAN17G2349 Fragaria x ananassa HOM05D005221 ORTHO05D006355 1.0e-43 181.0 238 45.8
Migut.N00171 Erythranthe guttata HOM05D005221 ORTHO05D006355 1.8e-43 180.3 246 48.8
Sc19g0004310 Simmondsia chinensis HOM05D005221 ORTHO05D006355 3.0e-43 179.5 251 49.4
CANSAT78G1299 Cannabis sativa HOM05D005221 ORTHO05D006355 6.7e-43 178.3 289 48.8
Dinv38425 Davidia involucrata HOM05D005221 ORTHO05D006355 7.4e-42 174.9 170 63.5
Aqoxy5G00503 Aquilegia oxysepala HOM05D005221 ORTHO05D006355 6.2e-41 171.8 244 50.4
PGR142G0441 Punica granatum HOM05D005221 ORTHO05D006355 8.1e-41 171.4 266 48.5
ECA234G2268 Erigeron canadensis HOM05D005221 ORTHO05D006355 1.4e-40 170.6 219 48.9
Carub.0003s0539 Capsella rubella HOM05D005221 ORTHO05D006355 1.8e-40 170.2 244 48.0
Lsat_1_v5_gn_5_148500 Lactuca sativa HOM05D005221 ORTHO05D006355 5.3e-40 168.7 232 48.3
SGA_v2.0_scaffold10G05107 Striga asiatica HOM05D005221 ORTHO05D006355 1.2e-39 167.5 231 54.1
Oeu029026.1 Olea europaea HOM05D005221 ORTHO05D006355 4.5e-39 165.6 173 50.9
AT3G05980 Arabidopsis thaliana HOM05D005221 ORTHO05D006355 5.8e-39 165.2 243 46.9
HanXRQChr10g0296561 Helianthus annuus HOM05D005221 ORTHO05D006355 7.6e-39 164.9 237 49.4
TAR636G2071 Trochodendron aralioides HOM05D002203 ORTHO05D002647 9.9e-39 164.5 148 59.5
BcaC05g30072 Brassica carinata HOM05D005221 ORTHO05D006355 1.3e-38 164.1 237 46.0
C05p61280 Brassica napus HOM05D005221 ORTHO05D006355 1.7e-38 163.7 237 48.5
BolC5t34787H Brassica oleracea HOM05D005221 ORTHO05D006355 1.7e-38 163.7 237 48.5
Aa31LG5G16450 Aethionema arabicum HOM05D005221 ORTHO05D006355 2.2e-38 163.3 224 51.8
BraA05t22925Z Brassica rapa HOM05D005221 ORTHO05D006355 2.2e-38 163.3 237 47.7
THA.LOC104818779 Tarenaya hassleriana HOM05D005221 ORTHO05D006355 2.9e-38 162.9 237 47.7
Hma1.2p1_0511F.1_g168910 Hydrangea macrophylla HOM05D005221 ORTHO05D006355 4.9e-38 162.2 235 51.5
MSTRG.4014 Avicennia marina HOM05D005221 ORTHO05D006355 1.1e-37 161.0 238 46.2
A05p42050 Brassica napus HOM05D005221 ORTHO05D006355 1.1e-37 161.0 234 47.4
AL3G16790 Arabidopsis lyrata HOM05D005221 ORTHO05D006355 3.2e-37 159.5 246 44.7
Eucgr.B01092 Eucalyptus grandis HOM05D005221 ORTHO05D006355 5.5e-37 158.7 268 42.5
DCAR_024599 Daucus carota HOM05D005221 ORTHO05D006355 1.2e-36 157.5 236 43.6
HanXRQChr04g0110301 Helianthus annuus HOM05D005221 ORTHO05D006355 3.0e-35 152.9 227 48.9
MBI17_g31753_MAGBIO Magnolia biondii HOM05D005221 ORTHO05D006355 3.0e-35 152.9 224 39.7
PGR004G1499 Punica granatum HOM05D005221 ORTHO05D006355 3.9e-35 152.5 272 38.6
CARHR080490 Cardamine hirsuta HOM05D005221 ORTHO05D006355 4.3e-34 149.1 239 46.4
BraA01t04457Z Brassica rapa HOM05D005221 ORTHO05D006355 9.6e-34 147.9 241 41.9
Thhalv10021379m.g Eutrema salsugineum HOM05D005221 ORTHO05D006355 2.1e-33 146.7 250 44.8
Lj6P597T84 Lonicera japonica HOM05D005221 ORTHO05D006355 3.1e-32 142.9 168 54.8
Sp3g04920 Schrenkiella parvula HOM05D005221 ORTHO05D006355 3.1e-32 142.9 249 45.0
Hma1.2p1_0995F.1_g245620 Hydrangea macrophylla HOM05D005221 ORTHO05D006355 6.9e-32 141.7 150 55.3
Atru.chr4.2515 Acer truncatum HOM05D005221 ORTHO05D006355 9.0e-32 141.4 236 40.7
BolC9t58548H Brassica oleracea HOM05D005221 ORTHO05D006355 7.6e-31 138.3 258 44.2
BraA03t10262Z Brassica rapa HOM05D005221 ORTHO05D006355 7.6e-31 138.3 239 44.8
BcaC09g47869 Brassica carinata HOM05D005221 ORTHO05D006355 1.0e-30 137.9 237 45.1
BolC1t05645H Brassica oleracea HOM05D005221 ORTHO05D006355 1.7e-30 137.1 239 44.8
BcaB01g04866 Brassica carinata HOM05D005221 ORTHO05D006355 1.4e-29 134.0 248 44.4
A10p20340 Brassica napus HOM05D005221 ORTHO05D006355 1.4e-29 134.0 262 43.1
BolC3t13571H Brassica oleracea HOM05D005221 ORTHO05D006355 1.4e-29 134.0 227 45.8
BraA10t44105Z Brassica rapa HOM05D005221 ORTHO05D006355 1.4e-29 134.0 262 43.1
BcaC04g18576 Brassica carinata HOM05D005221 ORTHO05D006355 4.2e-29 132.5 264 42.8
C09p56940 Brassica napus HOM05D005221 ORTHO05D006355 4.2e-29 132.5 264 42.8
Thhalv10016073m.g Eutrema salsugineum HOM05D005221 ORTHO05D006355 4.2e-29 132.5 270 43.3
C03p11020 Brassica napus HOM05D005221 ORTHO05D006355 4.6e-28 129.0 235 45.1
BcaB01g05141 Brassica carinata HOM05D005221 ORTHO05D006355 1.8e-27 127.1 226 45.6
Carub.0006s1768 Capsella rubella HOM05D005221 ORTHO05D006355 1.8e-27 127.1 251 45.4
AT5G19340 Arabidopsis thaliana HOM05D005221 ORTHO05D006355 1.5e-26 124.0 269 42.4
A03p09440 Brassica napus HOM05D005221 ORTHO05D006355 3.3e-26 122.9 235 43.4
Ah.04g154490 Amaranthus hybridus HOM05D005221 ORTHO05D006355 7.4e-26 121.7 179 48.6
arahy.Tifrunner.gnm1.ann1.0RM5BV Arachis hypogaea HOM05D005221 ORTHO05D006355 9.7e-26 121.3 249 41.4
BcaB08g36581 Brassica carinata HOM05D005221 ORTHO05D006355 9.7e-26 121.3 255 41.6
AL6G30830 Arabidopsis lyrata HOM05D005221 ORTHO05D006355 5.3e-24 115.5 248 43.5
CARHR193620 Cardamine hirsuta HOM05D005221 ORTHO05D006355 2.9e-22 109.8 266 40.2
Sp6g25070 Schrenkiella parvula HOM05D005221 ORTHO05D006355 2.9e-22 109.8 243 42.4
SGA_v2.0_scaffold39G15291 Striga asiatica HOM05D005221 ORTHO05D006355 3.8e-22 109.4 231 35.5
SGA_v2.0_scaffold237G43792 Striga asiatica HOM05D005221 ORTHO05D006355 5.0e-22 109.0 241 34.4
BcaNung07026 Brassica carinata HOM05D005221 ORTHO05D006355 1.9e-21 107.1 160 43.1
PSO302G0248 Papaver somniferum HOM05D005221 ORTHO05D006355 1.9e-21 107.1 154 45.5
AUR62038640 Chenopodium quinoa HOM05D005221 ORTHO05D006355 1.6e-20 104.0 160 42.5
Nn5g28878 Nelumbo nucifera HOM05D005221 ORTHO05D006355 1.5e-18 97.4 95 52.6
Nn3g20708 Nelumbo nucifera HOM05D005221 ORTHO05D006355 1.4e-16 90.9 91 52.7
AUR62038093 Chenopodium quinoa HOM05D005221 ORTHO05D006355 8.5e-14 81.6 148 37.8
ATR0626G396 Amborella trichopoda HOM05D005221 ORTHO05D006355 1.3e-09 67.8 145 36.6
Psat6g208720 Pisum sativum HOM05D005221 ORTHO05D006355 1.3e-09 67.8 81 56.8
Nn1g04890 Nelumbo nucifera HOM05D002458 ORTHO05D002603 4.5e-07 59.3 129 31.8
Actinidia16500 Actinidia chinensis HOM05D002458 ORTHO05D002603 6.5e-06 55.5 135 32.6
Nn1g06084 Nelumbo nucifera HOM05D005221 ORTHO05D006355 6.5e-06 55.5 52 51.9


User provided reference genes

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