Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc06g054180.1 Solanum lycopersicum HOM05D003253 ORTHO05D002078 1.3e-142 509.6 248 100.0
Solyc06g054160.2 Solanum lycopersicum HOM05D003253 ORTHO05D002078 7.0e-107 391.0 192 98.4
Sopen06g019340 Solanum pennellii HOM05D003253 ORTHO05D002078 5.9e-106 387.9 193 97.4
Solyc06g054200.3 Solanum lycopersicum HOM05D003253 ORTHO05D002078 1.4e-86 323.6 192 81.8
PGSC0003DMG400006740 Solanum tuberosum HOM05D003253 ORTHO05D002078 8.9e-86 320.9 173 89.6
Sopen09g024540 Solanum pennellii HOM05D003253 ORTHO05D002078 3.6e-79 298.9 173 82.7
Solyc06g054230.4 Solanum lycopersicum HOM05D003253 ORTHO05D002078 1.7e-73 280.0 182 76.4
PGSC0003DMG400023100 Solanum tuberosum HOM05D003253 ORTHO05D002078 2.3e-73 279.6 192 72.4
Solyc09g061370.1 Solanum lycopersicum HOM05D003253 ORTHO05D002078 2.1e-71 273.1 173 78.0
Nitab4.5_0008118g0010 Nicotiana tabacum HOM05D003253 ORTHO05D002078 6.2e-71 271.6 173 75.1
Nitab4.5_0000321g0110 Nicotiana tabacum HOM05D003253 ORTHO05D002078 1.4e-70 270.4 173 75.1
Sopen06g019350 Solanum pennellii HOM05D003253 ORTHO05D002078 1.2e-69 267.3 173 76.3
CAN.G231.2 Capsicum annuum HOM05D003253 ORTHO05D002078 4.1e-67 258.8 217 59.0
PGSC0003DMG400030174 Solanum tuberosum HOM05D003253 ORTHO05D002078 6.6e-65 251.5 173 71.7
Peaxi162Scf00192g00112 Petunia axillaris HOM05D003253 ORTHO05D002078 9.5e-64 247.7 173 67.6
PGSC0003DMG400016262 Solanum tuberosum HOM05D003253 ORTHO05D002078 1.8e-62 243.4 154 79.9
PGSC0003DMG400041970 Solanum tuberosum HOM05D003253 ORTHO05D002078 3.4e-61 239.2 173 70.5
Nitab4.5_0001920g0020 Nicotiana tabacum HOM05D003253 ORTHO05D002078 9.9e-61 237.7 180 64.4
Nitab4.5_0001342g0020 Nicotiana tabacum HOM05D003253 ORTHO05D002078 5.4e-59 231.9 189 61.9
Sopen09g024360 Solanum pennellii HOM05D003253 ORTHO05D002078 7.1e-59 231.5 155 71.0
Peaxi162Scf00092g00617 Petunia axillaris HOM05D003253 ORTHO05D002078 4.6e-58 228.8 181 62.4
Sopen09g023100 Solanum pennellii HOM05D003253 ORTHO05D002078 3.9e-57 225.7 160 70.6
PGSC0003DMG400032262 Solanum tuberosum HOM05D003253 ORTHO05D002078 4.3e-56 222.2 182 60.4
Sopen09g031020 Solanum pennellii HOM05D003253 ORTHO05D002078 1.6e-55 220.3 182 59.3
Solyc09g082140.4 Solanum lycopersicum HOM05D003253 ORTHO05D002078 4.7e-55 218.8 241 49.0
Solyc09g061260.2 Solanum lycopersicum HOM05D003253 ORTHO05D002078 1.8e-54 216.9 155 71.0
CAN.G1094.7 Capsicum annuum HOM05D003253 ORTHO05D002078 5.3e-54 215.3 170 61.8
CiPaw.01G167300 Carya illinoinensis HOM05D003253 ORTHO05D002078 1.3e-52 210.7 184 55.4
Cc03_g03900 Coffea canephora HOM05D003253 ORTHO05D002078 3.8e-52 209.1 181 55.8
QL06p002114 Quercus lobata HOM05D003253 ORTHO05D002078 6.4e-52 208.4 185 55.7
Haze_00887 Corylus avellana HOM05D003253 ORTHO05D002078 5.4e-51 205.3 185 55.1
Actinidia25641 Actinidia chinensis HOM05D003253 ORTHO05D002078 7.1e-51 204.9 182 54.4
Actinidia35275 Actinidia chinensis HOM05D003253 ORTHO05D002078 7.1e-51 204.9 182 54.4
CSS0040917 Camellia sinensis var. sinensis HOM05D003253 ORTHO05D002078 1.2e-50 204.1 187 55.6
Cfa015661 Carpinus fangiana HOM05D003253 ORTHO05D002078 1.2e-50 204.1 185 55.1
Oeu049061.1 Olea europaea HOM05D003253 ORTHO05D002078 1.6e-50 203.8 183 56.8
Actinidia25640 Actinidia chinensis HOM05D003253 ORTHO05D002078 2.7e-50 203.0 183 57.4
Actinidia35276 Actinidia chinensis HOM05D003253 ORTHO05D002078 2.7e-50 203.0 183 57.4
CSS0030672 Camellia sinensis var. sinensis HOM05D003253 ORTHO05D002078 2.7e-50 203.0 187 55.1
RcHm_v2.0_Chr4g0416001 Rosa chinensis HOM05D003253 ORTHO05D002078 2.7e-50 203.0 190 55.3
MSTRG.24737 Avicennia marina HOM05D003253 ORTHO05D002078 4.6e-50 202.2 189 53.4
Manes.03G177500 Manihot esculenta HOM05D003253 ORTHO05D002078 4.6e-50 202.2 183 55.7
Thecc.04G233500 Theobroma cacao HOM05D003253 ORTHO05D002078 6.0e-50 201.8 190 56.8
CiPaw.02G097800 Carya illinoinensis HOM05D003253 ORTHO05D002078 7.8e-50 201.4 182 53.8
AL1G15260 Arabidopsis lyrata HOM05D003253 ORTHO05D002078 1.0e-49 201.1 179 55.3
Lj6C607G12 Lonicera japonica HOM05D003253 ORTHO05D002078 1.0e-49 201.1 188 51.1
DCAR_002383 Daucus carota HOM05D003253 ORTHO05D002078 2.3e-49 199.9 191 52.4
Potri.010G086600 Populus trichocarpa HOM05D003253 ORTHO05D002078 3.9e-49 199.1 165 60.0
Sabra10G0056900 Salix brachista HOM05D003253 ORTHO05D002078 3.9e-49 199.1 181 55.8
Duzib052G0544 Durio zibethinus HOM05D003253 ORTHO05D002078 6.6e-49 198.4 196 52.6
BcaB02g06862 Brassica carinata HOM05D003253 ORTHO05D002078 8.7e-49 198.0 177 53.1
Dinv44542 Davidia involucrata HOM05D003253 ORTHO05D002078 8.7e-49 198.0 168 58.3
FAN12G2226 Fragaria x ananassa HOM05D003253 ORTHO05D002078 8.7e-49 198.0 183 55.2
Cpa.g.sc1512.1 Carica papaya HOM05D003253 ORTHO05D002078 1.9e-48 196.8 181 55.2
FvH4_4g16310 Fragaria vesca HOM05D003253 ORTHO05D002078 1.9e-48 196.8 183 55.2
FAN07G1764 Fragaria x ananassa HOM05D003253 ORTHO05D002078 4.3e-48 195.7 183 54.6
Gohir.D09G055900 Gossypium hirsutum HOM05D003253 ORTHO05D002078 5.6e-48 195.3 221 50.2
FAN22G0721 Fragaria x ananassa HOM05D003253 ORTHO05D002078 1.3e-47 194.1 183 54.1
THA.LOC104800959 Tarenaya hassleriana HOM05D003253 ORTHO05D002078 1.3e-47 194.1 196 51.5
TAR633G1510 Trochodendron aralioides HOM05D003253 ORTHO05D002078 1.3e-47 194.1 178 53.9
Aa31LG1G19210 Aethionema arabicum HOM05D003253 ORTHO05D002078 1.6e-47 193.7 171 55.6
Gohir.A09G056601 Gossypium hirsutum HOM05D003253 ORTHO05D002078 2.1e-47 193.4 221 49.8
Carub.0001s0475 Capsella rubella HOM05D003253 ORTHO05D002078 2.8e-47 193.0 188 51.1
COL.COLO4_21490 Corchorus olitorius HOM05D003253 ORTHO05D002078 4.8e-47 192.2 182 56.0
Hma1.2p1_0602F.1_g187400 Hydrangea macrophylla HOM05D003253 ORTHO05D002078 4.8e-47 192.2 194 52.6
Sp1g04290 Schrenkiella parvula HOM05D003253 ORTHO05D002078 4.8e-47 192.2 172 54.1
C05p03760 Brassica napus HOM05D003253 ORTHO05D002078 6.2e-47 191.8 178 52.8
BolC5t29153H Brassica oleracea HOM05D003253 ORTHO05D002078 6.2e-47 191.8 178 52.8
MBI12_g36454_MAGBIO Magnolia biondii HOM05D003253 ORTHO05D002078 8.1e-47 191.4 180 51.7
RhsimUnG0259000 Rhododendron simsii HOM05D003253 ORTHO05D002078 8.1e-47 191.4 188 52.7
Solyc09g059740.3 Solanum lycopersicum HOM05D003253 ORTHO05D002078 8.1e-47 191.4 130 71.5
Ciclev10004835m.g Citrus clementina HOM05D003253 ORTHO05D002078 1.1e-46 191.0 152 58.6
Thhalv10007544m.g Eutrema salsugineum HOM05D003253 ORTHO05D002078 1.1e-46 191.0 180 51.7
A10p04120 Brassica napus HOM05D003253 ORTHO05D002078 1.4e-46 190.7 170 53.5
SalBow3G1993 Salvia bowleyana HOM05D003253 ORTHO05D002078 1.4e-46 190.7 192 51.0
AT1G05410 Arabidopsis thaliana HOM05D003253 ORTHO05D002078 1.8e-46 190.3 179 52.0
Gorai.006G069200 Gossypium raimondii HOM05D003253 ORTHO05D002078 1.8e-46 190.3 167 59.3
MD13G1194400 Malus domestica HOM05D003253 ORTHO05D002078 2.4e-46 189.9 172 55.2
Solyc09g059910.3 Solanum lycopersicum HOM05D003253 ORTHO05D002078 4.0e-46 189.1 158 60.8
TWI53G2057 Tripterygium wilfordii HOM05D003253 ORTHO05D002078 5.3e-46 188.7 177 52.0
TWI09G0550 Tripterygium wilfordii HOM05D003253 ORTHO05D002078 6.9e-46 188.3 181 51.4
Prupe.1G015300 Prunus persica HOM05D003253 ORTHO05D002078 9.0e-46 188.0 207 49.3
PGR004G0723 Punica granatum HOM05D003253 ORTHO05D002078 1.2e-45 187.6 197 48.7
vmacro09558 Vaccinium macrocarpon HOM05D003253 ORTHO05D002078 1.2e-45 187.6 182 54.9
CANSAT78G2304 Cannabis sativa HOM05D003253 ORTHO05D002078 2.0e-45 186.8 175 50.9
CARHR004920 Cardamine hirsuta HOM05D003253 ORTHO05D002078 2.6e-45 186.4 172 52.9
Nn1g02344 Nelumbo nucifera HOM05D003253 ORTHO05D002078 2.6e-45 186.4 180 52.2
Sed0023955 Sechium edule HOM05D003253 ORTHO05D002078 2.6e-45 186.4 183 51.4
Aqoxy2G03403 Aquilegia oxysepala HOM05D003253 ORTHO05D002078 3.4e-45 186.0 174 51.7
Aqoxy5G00455 Aquilegia oxysepala HOM05D003253 ORTHO05D002078 3.4e-45 186.0 184 49.5
vmacro09557 Vaccinium macrocarpon HOM05D003253 ORTHO05D002078 4.5e-45 185.7 181 53.6
Sc19g0004070 Simmondsia chinensis HOM05D003253 ORTHO05D002078 9.9e-45 184.5 174 52.9
Migut.N00190 Erythranthe guttata HOM05D003253 ORTHO05D002078 1.3e-44 184.1 200 50.0
DCAR_027222 Daucus carota HOM05D003253 ORTHO05D002078 1.7e-44 183.7 157 54.8
GSVIVG01017993001 Vitis vinifera HOM05D003253 ORTHO05D002078 1.7e-44 183.7 179 53.6
PGR004G0591 Punica granatum HOM05D003253 ORTHO05D002078 1.1e-43 181.0 181 50.3
BraA10t42682Z Brassica rapa HOM05D003253 ORTHO05D002078 1.4e-43 180.6 170 51.2
PGR004G2032 Punica granatum HOM05D003253 ORTHO05D002078 2.4e-43 179.9 178 51.1
ClCG05G005130 Citrullus lanatus HOM05D003253 ORTHO05D002078 5.4e-43 178.7 183 50.8
Lsat_1_v5_gn_7_64380 Lactuca sativa HOM05D003253 ORTHO05D002078 7.1e-43 178.3 193 50.3
Eucgr.H03453 Eucalyptus grandis HOM05D003253 ORTHO05D002078 9.3e-43 177.9 166 53.6
CsaV3_3G013260 Cucumis sativus L. HOM05D003253 ORTHO05D002078 1.2e-42 177.6 176 51.7
Solyc09g061500.2 Solanum lycopersicum HOM05D003253 ORTHO05D002078 2.7e-42 176.4 131 66.4
Solyc09g061580.1 Solanum lycopersicum HOM05D003253 ORTHO05D002078 2.7e-42 176.4 105 76.2
CARHR054160 Cardamine hirsuta HOM05D003253 ORTHO05D002078 7.9e-42 174.9 170 50.6
ECA240G1510 Erigeron canadensis HOM05D003253 ORTHO05D002078 1.0e-41 174.5 180 50.0
BcaC05g24390 Brassica carinata HOM05D003253 ORTHO05D002078 1.3e-41 174.1 150 55.3
Medtr1g103600 Medicago truncatula HOM05D003253 ORTHO05D002078 2.3e-41 173.3 171 52.6
Glyma.18G119500 Glycine max HOM05D003253 ORTHO05D002078 1.1e-40 171.0 184 50.5
Sed0019594 Sechium edule HOM05D003253 ORTHO05D002078 1.9e-40 170.2 171 51.5
Solyc09g061540.1 Solanum lycopersicum HOM05D003253 ORTHO05D002078 1.9e-40 170.2 105 76.2
HanXRQChr09g0248261 Helianthus annuus HOM05D003253 ORTHO05D002078 5.6e-40 168.7 175 51.4
Phvul.002G044800 Phaseolus vulgaris HOM05D003253 ORTHO05D002078 5.6e-40 168.7 192 42.2
arahy.Tifrunner.gnm1.ann1.2A778E Arachis hypogaea HOM05D003253 ORTHO05D002078 7.4e-40 168.3 171 52.0
Lalb_Chr09g0319891 Lupinus albus HOM05D003253 ORTHO05D002078 7.4e-40 168.3 179 53.1
Hund12120 Selenicereus undatus HOM05D003253 ORTHO05D002078 7.4e-40 168.3 143 55.9
TPR.G5553 Trifolium pratense HOM05D003253 ORTHO05D002078 7.4e-40 168.3 244 41.8
AUR62008677 Chenopodium quinoa HOM05D003253 ORTHO05D002078 1.3e-39 167.5 143 55.2
AUR62025569 Chenopodium quinoa HOM05D003253 ORTHO05D002078 1.3e-39 167.5 143 54.5
arahy.Tifrunner.gnm1.ann1.ETQ115 Arachis hypogaea HOM05D003253 ORTHO05D002078 1.6e-39 167.2 171 51.5
PSO210G5071 Papaver somniferum HOM05D003253 ORTHO05D002078 1.6e-39 167.2 224 42.9
Psat0s3046g0120 Pisum sativum HOM05D003253 ORTHO05D002078 2.1e-39 166.8 184 50.5
Cc06_g18330 Coffea canephora HOM05D003253 ORTHO05D002078 2.8e-39 166.4 142 55.6
SGA_v2.0_scaffold522G52706 Striga asiatica HOM05D003253 ORTHO05D002078 2.8e-39 166.4 159 52.2
Psat6g206800 Pisum sativum HOM05D003253 ORTHO05D002078 3.7e-39 166.0 184 50.5
Glyma.11G006000 Glycine max HOM05D003253 ORTHO05D002078 4.8e-39 165.6 185 49.2
Solyc09g061590.1 Solanum lycopersicum HOM05D003253 ORTHO05D002078 4.8e-39 165.6 118 68.6
Glyma.01G237400 Glycine max HOM05D003253 ORTHO05D002078 6.2e-39 165.2 185 48.6
BcaC05g24391 Brassica carinata HOM05D003253 ORTHO05D002078 8.1e-39 164.9 178 47.2
Psat6g188240 Pisum sativum HOM05D003253 ORTHO05D002078 1.1e-38 164.5 181 49.7
Lalb_Chr05g0211011 Lupinus albus HOM05D003253 ORTHO05D002078 2.4e-38 163.3 189 49.2
Lalb_Chr25g0279741 Lupinus albus HOM05D003253 ORTHO05D002078 4.0e-38 162.5 167 49.7
PSO761G0482 Papaver somniferum HOM05D003253 ORTHO05D002078 4.0e-38 162.5 165 50.3
MELO3C006528.2 Cucumis melo HOM05D003253 ORTHO05D002078 5.3e-38 162.2 183 48.6
VMungo1215G2555 Vigna mungo HOM05D003253 ORTHO05D002078 6.9e-38 161.8 179 49.2
PSO210G1140 Papaver somniferum HOM05D003253 ORTHO05D002078 1.2e-37 161.0 206 42.7
Eucgr.H03454 Eucalyptus grandis HOM05D003253 ORTHO05D002078 1.5e-37 160.6 170 50.0
PGR004G2151 Punica granatum HOM05D003253 ORTHO05D002078 1.5e-37 160.6 162 48.1
PSO832G3307 Papaver somniferum HOM05D003253 ORTHO05D002078 2.0e-37 160.2 183 45.9
Lj5g0003807 Lotus japonicus HOM05D003253 ORTHO05D002078 2.6e-37 159.8 172 48.8
Os03g0747200 Oryza sativa ssp. japonica HOM05D003253 ORTHO05D002078 3.4e-37 159.5 181 44.8
PGSC0003DMG400030176 Solanum tuberosum HOM05D003253 ORTHO05D002078 5.8e-37 158.7 172 52.3
Zm00001eb057100 Zea mays HOM05D003253 ORTHO05D002078 9.9e-37 157.9 195 43.1
Medtr5g006390 Medicago truncatula HOM05D003253 ORTHO05D002078 8.4e-36 154.8 170 50.0
Ca_24401_v3 Cicer arietinum L. HOM05D003253 ORTHO05D002078 1.1e-35 154.5 179 48.0
LjContig00408g0013219 Lotus japonicus HOM05D003253 ORTHO05D002078 1.9e-35 153.7 184 48.4
Phvul.002G045300 Phaseolus vulgaris HOM05D003253 ORTHO05D002078 3.2e-35 152.9 183 45.9
Psat4g210160 Pisum sativum HOM05D003253 ORTHO05D002078 3.2e-35 152.9 167 49.1
TPR.G37995 Trifolium pratense HOM05D003253 ORTHO05D002078 2.7e-34 149.8 170 50.0
PGSC0003DMG400030175 Solanum tuberosum HOM05D003253 ORTHO05D002078 1.8e-33 147.1 118 66.1
Solyc09g059890.2 Solanum lycopersicum HOM05D003253 ORTHO05D002078 3.9e-33 146.0 110 65.5
ATR0697G249 Amborella trichopoda HOM05D003253 ORTHO05D002078 8.7e-33 144.8 166 45.2
Dinv14001 Davidia involucrata HOM05D003253 ORTHO05D002078 2.5e-32 143.3 123 58.5
Ca_10889_v3 Cicer arietinum L. HOM05D003253 ORTHO05D002078 3.3e-32 142.9 171 45.6
Ca_30336_v3 Cicer arietinum L. HOM05D003253 ORTHO05D002078 3.3e-32 142.9 171 45.6
DCAR_030641 Daucus carota HOM05D003253 ORTHO05D002078 5.3e-30 135.6 212 36.3
SEGI_30321 Sequoiadendron giganteum HOM05D003253 ORTHO05D002078 1.5e-29 134.0 171 40.4
TWI73G0819 Tripterygium wilfordii HOM05D003253 ORTHO05D002078 4.6e-26 122.5 142 45.8
BcaB05g24280 Brassica carinata HOM05D003253 ORTHO05D002078 6.7e-25 118.6 102 57.8
DCAR_027225 Daucus carota HOM05D003253 ORTHO05D002078 8.7e-25 118.2 101 56.4
SEGI_19972 Sequoiadendron giganteum HOM05D003253 ORTHO05D002078 2.8e-23 113.2 109 47.7
Pp3c9_22000 Physcomitrium patens HOM05D003253 ORTHO05D002078 1.8e-22 110.5 151 41.1
Pp3c9_22005 Physcomitrium patens HOM05D003253 ORTHO05D002078 1.8e-22 110.5 151 41.1
Pp3c15_9060 Physcomitrium patens HOM05D003253 ORTHO05D002078 5.0e-20 102.4 141 39.7
Solyc09g060020.1 Solanum lycopersicum HOM05D003253 ORTHO05D002078 8.5e-20 101.7 75 69.3
Solyc09g061600.1 Solanum lycopersicum HOM05D003253 ORTHO05D002078 2.5e-19 100.1 79 64.6
BcaB05g24279 Brassica carinata HOM05D003253 ORTHO05D002078 2.7e-18 96.7 90 55.6
AagrBONN_evm.TU.Sc2ySwM_344.1597 Anthoceros agrestis HOM05D003253 ORTHO05D002078 2.0e-16 90.5 194 33.5
HPP92_009611 Vanilla planifolia HOM05D003253 ORTHO05D002078 2.4e-14 83.6 125 39.2
Solyc09g059870.1 Solanum lycopersicum HOM05D003253 ORTHO05D002078 6.9e-14 82.0 73 53.4
Solyc09g060060.1 Solanum lycopersicum HOM05D003253 ORTHO05D002078 9.1e-14 81.6 60 68.3
DCAR_027224 Daucus carota HOM05D003253 ORTHO05D002078 2.9e-12 76.6 69 58.0
DCAR_027223 Daucus carota HOM05D003253 ORTHO05D002078 1.1e-11 74.7 69 55.1
Solyc09g059900.1 Solanum lycopersicum HOM05D003253 ORTHO05D002078 2.1e-10 70.5 61 62.3
Cpa.g.sc58.96 Carica papaya HOM05D003253 ORTHO05D002078 4.7e-10 69.3 67 52.2
CBR_g48542 Chara braunii HOM05D003253 ORTHO05D002078 2.3e-09 67.0 168 27.4
Mapoly0137s0011 Marchantia polymorpha HOM05D014402 ORTHO05D016488 8.8e-09 65.1 90 36.7
Solyc09g060010.1 Solanum lycopersicum HOM05D003253 ORTHO05D002078 8.8e-09 65.1 63 55.6
AagrBONN_evm.TU.Sc2ySwM_117.1010 Anthoceros agrestis HOM05D014402 ORTHO05D016488 3.3e-08 63.2 147 26.5
RcHm_v2.0_Chr7g0235781 Rosa chinensis HOM05D000809 ORTHO05D001196 3.7e-07 59.7 245 26.1


User provided reference genes

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