Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc06g053690.3 Solanum lycopersicum HOM05D003958 ORTHO05D004864 4.1e-36 154.1 70 100.0
Sopen02g031390 Solanum pennellii HOM05D003958 ORTHO05D004864 1.2e-24 115.9 63 87.3
PGSC0003DMG400000483 Solanum tuberosum HOM05D003958 ORTHO05D004864 1.2e-24 115.9 63 87.3
Nitab4.5_0002739g0040 Nicotiana tabacum HOM05D003958 ORTHO05D004864 3.9e-23 110.9 63 84.1
Nitab4.5_0008215g0010 Nicotiana tabacum HOM05D003958 ORTHO05D004864 3.9e-23 110.9 63 84.1
Sopen06g018800 Solanum pennellii HOM05D003958 ORTHO05D004864 6.7e-23 110.2 63 84.1
CAN.G206.10 Capsicum annuum HOM05D003958 ORTHO05D004864 2.0e-22 108.6 63 82.5
Peaxi162Scf00129g01325 Petunia axillaris HOM05D003958 ORTHO05D004864 2.6e-22 108.2 63 81.0
vmacro18265 Vaccinium macrocarpon HOM05D003958 ORTHO05D004864 1.2e-19 99.4 62 72.6
Duzib147G0566 Durio zibethinus HOM05D003958 ORTHO05D004864 7.7e-19 96.7 62 71.0
Duzib147G0897 Durio zibethinus HOM05D003958 ORTHO05D004864 7.7e-19 96.7 62 71.0
CSS0020788 Camellia sinensis var. sinensis HOM05D003958 ORTHO05D004864 1.0e-18 96.3 63 69.8
CSS0020854 Camellia sinensis var. sinensis HOM05D003958 ORTHO05D004864 1.0e-18 96.3 63 69.8
Duzib147G0735 Durio zibethinus HOM05D003958 ORTHO05D004864 1.0e-18 96.3 62 71.0
arahy.Tifrunner.gnm1.ann1.CB8F3G Arachis hypogaea HOM05D003958 ORTHO05D004864 1.3e-18 95.9 62 72.6
Migut.H00096 Erythranthe guttata HOM05D003958 ORTHO05D004864 1.7e-18 95.5 64 68.8
Lsat_1_v5_gn_4_183181 Lactuca sativa HOM05D003958 ORTHO05D004864 1.7e-18 95.5 60 73.3
CiPaw.04G026700 Carya illinoinensis HOM05D003958 ORTHO05D004864 2.9e-18 94.7 62 67.7
arahy.Tifrunner.gnm1.ann1.38SPRB Arachis hypogaea HOM05D003958 ORTHO05D004864 3.8e-18 94.4 62 71.0
Ciclev10016011m.g Citrus clementina HOM05D003958 ORTHO05D004864 3.8e-18 94.4 61 70.5
Cfa007405 Carpinus fangiana HOM05D003958 ORTHO05D004864 5.0e-18 94.0 62 71.0
ECA232G3491 Erigeron canadensis HOM05D003958 ORTHO05D004864 5.0e-18 94.0 62 71.0
Atru.chr6.2249 Acer truncatum HOM05D003958 ORTHO05D004864 6.5e-18 93.6 62 67.7
Atru.chr6.2341 Acer truncatum HOM05D003958 ORTHO05D004864 6.5e-18 93.6 62 67.7
MSTRG.3157 Avicennia marina HOM05D003958 ORTHO05D004864 6.5e-18 93.6 62 69.4
Oeu057051.1 Olea europaea HOM05D003958 ORTHO05D004864 6.5e-18 93.6 62 67.7
QL02p075632 Quercus lobata HOM05D003958 ORTHO05D004864 6.5e-18 93.6 62 67.7
Gohir.A09G027800 Gossypium hirsutum HOM05D003958 ORTHO05D004864 8.5e-18 93.2 62 69.4
Gohir.D09G027100 Gossypium hirsutum HOM05D003958 ORTHO05D004864 8.5e-18 93.2 62 69.4
Gorai.006G031600 Gossypium raimondii HOM05D003958 ORTHO05D004864 8.5e-18 93.2 62 69.4
Sed0009763 Sechium edule HOM05D003958 ORTHO05D004864 8.5e-18 93.2 62 67.7
arahy.Tifrunner.gnm1.ann1.8Z0BSJ Arachis hypogaea HOM05D003958 ORTHO05D004864 1.1e-17 92.8 62 69.4
COL.COLO4_29053 Corchorus olitorius HOM05D003958 ORTHO05D004864 1.4e-17 92.4 62 67.7
Gohir.D13G007800 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.4e-17 92.4 62 66.1
Gorai.013G008200 Gossypium raimondii HOM05D003958 ORTHO05D004864 1.4e-17 92.4 62 66.1
Thecc.04G013700 Theobroma cacao HOM05D003958 ORTHO05D004864 1.4e-17 92.4 62 67.7
CiPaw.03G040700 Carya illinoinensis HOM05D003958 ORTHO05D004864 1.9e-17 92.0 62 67.7
Lju41A38T12 Lonicera japonica HOM05D003958 ORTHO05D004864 1.9e-17 92.0 62 67.7
Hund02774 Selenicereus undatus HOM05D003958 ORTHO05D004864 1.9e-17 92.0 63 65.1
Cc02_g12190 Coffea canephora HOM05D003958 ORTHO05D004864 2.5e-17 91.7 62 67.7
Haze_14701 Corylus avellana HOM05D003958 ORTHO05D004864 2.5e-17 91.7 62 67.7
Manes.17G113700 Manihot esculenta HOM05D003958 ORTHO05D004864 3.2e-17 91.3 62 64.5
DCAR_009028 Daucus carota HOM05D003958 ORTHO05D004864 5.5e-17 90.5 62 64.5
FvH4_6g51011 Fragaria vesca HOM05D003958 ORTHO05D004864 5.5e-17 90.5 62 66.1
FAN14G0618 Fragaria x ananassa HOM05D003958 ORTHO05D004864 5.5e-17 90.5 62 66.1
MBI05_g22036_MAGBIO Magnolia biondii HOM05D003958 ORTHO05D004864 5.5e-17 90.5 63 63.5
AL6G25360 Arabidopsis lyrata HOM05D003958 ORTHO05D004864 7.2e-17 90.1 62 64.5
Lj7A595G65 Lonicera japonica HOM05D003958 ORTHO05D004864 7.2e-17 90.1 62 62.9
TAR622G1043 Trochodendron aralioides HOM05D003958 ORTHO05D004864 9.4e-17 89.7 62 66.1
Carub.0006s1277 Capsella rubella HOM05D003958 ORTHO05D004864 1.2e-16 89.4 60 66.7
Hma1.2p1_0858F.1_g229230 Hydrangea macrophylla HOM05D003958 ORTHO05D004864 1.2e-16 89.4 62 66.1
Lalb_Chr03g0031671 Lupinus albus HOM05D003958 ORTHO05D004864 1.2e-16 89.4 62 66.1
PSO832G3613 Papaver somniferum HOM05D003958 ORTHO05D004864 1.2e-16 89.4 63 66.7
Psat1g092800 Pisum sativum HOM05D003958 ORTHO05D004864 1.2e-16 89.4 62 66.1
ClCG01G008920 Citrullus lanatus HOM05D003958 ORTHO05D004864 1.6e-16 89.0 62 66.1
Prupe.3G287900 Prunus persica HOM05D003958 ORTHO05D004864 1.6e-16 89.0 62 62.9
TWI12G0059 Tripterygium wilfordii HOM05D003958 ORTHO05D004864 1.6e-16 89.0 62 66.1
Ca_00876_v3 Cicer arietinum L. HOM05D003958 ORTHO05D004864 2.1e-16 88.6 62 66.1
Glyma.15G078000 Glycine max HOM05D003958 ORTHO05D004864 2.1e-16 88.6 66 62.1
Gorai.N017600 Gossypium raimondii HOM05D003958 ORTHO05D004864 2.1e-16 88.6 60 70.0
Sp6g29430 Schrenkiella parvula HOM05D003958 ORTHO05D004864 2.1e-16 88.6 62 64.5
CDE06G0036 Ceratophyllum demersum HOM05D003958 ORTHO05D004864 2.7e-16 88.2 62 66.1
Glyma.13G234900 Glycine max HOM05D003958 ORTHO05D004864 2.7e-16 88.2 62 67.7
HanXRQChr09g0255001 Helianthus annuus HOM05D003958 ORTHO05D004864 2.7e-16 88.2 60 70.0
Phvul.006G181700 Phaseolus vulgaris HOM05D003958 ORTHO05D004864 2.7e-16 88.2 62 66.1
Phvul.011G172200 Phaseolus vulgaris HOM05D003958 ORTHO05D004864 2.7e-16 88.2 62 66.1
TPR.G33516 Trifolium pratense HOM05D003958 ORTHO05D004864 2.7e-16 88.2 62 66.1
Eucgr.I01766 Eucalyptus grandis HOM05D003958 ORTHO05D004864 3.6e-16 87.8 62 64.5
THA.LOC104821089 Tarenaya hassleriana HOM05D003958 ORTHO05D004864 3.6e-16 87.8 65 61.5
CANSAT64G0951 Cannabis sativa HOM05D003958 ORTHO05D004864 4.7e-16 87.4 62 62.9
Ca_00369_v3 Cicer arietinum L. HOM05D003958 ORTHO05D004864 4.7e-16 87.4 63 63.5
ATR0057G029 Amborella trichopoda HOM05D003958 ORTHO05D004864 6.1e-16 87.0 63 60.3
Thhalv10014133m.g Eutrema salsugineum HOM05D003958 ORTHO05D004864 6.1e-16 87.0 62 62.9
PSO063G1059 Papaver somniferum HOM05D003958 ORTHO05D004864 6.1e-16 87.0 63 65.1
BolC9t59091H Brassica oleracea HOM05D003958 ORTHO05D004864 8.0e-16 86.7 62 61.3
CARHR198720 Cardamine hirsuta HOM05D003958 ORTHO05D004864 8.0e-16 86.7 62 59.7
Gohir.A01G232100 Gossypium hirsutum HOM05D003958 ORTHO05D004864 8.0e-16 86.7 57 70.2
Gorai.006G275300 Gossypium raimondii HOM05D003958 ORTHO05D015143 8.0e-16 86.7 57 70.2
Nn7g37719 Nelumbo nucifera HOM05D003958 ORTHO05D004864 8.0e-16 86.7 62 62.9
PGR054G0003 Punica granatum HOM05D003958 ORTHO05D004864 8.0e-16 86.7 62 64.5
Aa31LG11G15350 Aethionema arabicum HOM05D003958 ORTHO05D004864 1.0e-15 86.3 64 62.5
AT5G14600 Arabidopsis thaliana HOM05D003958 ORTHO05D004864 1.0e-15 86.3 62 62.9
Cpa.g.sc108.31 Carica papaya HOM05D003958 ORTHO05D004864 1.0e-15 86.3 62 62.9
CsaV3_1G037790 Cucumis sativus L. HOM05D003958 ORTHO05D004864 1.0e-15 86.3 63 61.9
PGR119G1149 Punica granatum HOM05D003958 ORTHO05D004864 1.0e-15 86.3 62 64.5
THA.LOC104802398 Tarenaya hassleriana HOM05D003958 ORTHO05D004864 1.0e-15 86.3 62 61.3
TPR.G11724 Trifolium pratense HOM05D003958 ORTHO05D004864 1.0e-15 86.3 62 62.9
BcaC03g13470 Brassica carinata HOM05D003958 ORTHO05D004864 1.4e-15 85.9 62 62.9
MELO3C021808.2 Cucumis melo HOM05D003958 ORTHO05D004864 1.4e-15 85.9 63 63.5
FAN09G1134 Fragaria x ananassa HOM05D003958 ORTHO05D004864 1.4e-15 85.9 62 64.5
Gorai.007G380200 Gossypium raimondii HOM05D003958 ORTHO05D004864 1.8e-15 85.5 52 75.0
Gorai.006G274500 Gossypium raimondii HOM05D003958 ORTHO05D004864 2.3e-15 85.1 60 65.0
A10p24040 Brassica napus HOM05D003958 ORTHO05D004864 3.0e-15 84.7 62 61.3
C09p62510 Brassica napus HOM05D003958 ORTHO05D004864 3.0e-15 84.7 62 61.3
BraA10t44467Z Brassica rapa HOM05D003958 ORTHO05D004864 3.0e-15 84.7 62 61.3
Gohir.D08G275428 Gossypium hirsutum HOM05D003958 ORTHO05D004864 3.0e-15 84.7 60 65.0
Gohir.D11G349300 Gossypium hirsutum HOM05D003958 ORTHO05D004864 3.0e-15 84.7 60 65.0
Gorai.004G293900 Gossypium raimondii HOM05D003958 ORTHO05D004864 3.0e-15 84.7 60 65.0
Lj2g0025561 Lotus japonicus HOM05D003958 ORTHO05D004864 3.0e-15 84.7 58 63.8
SGA_v2.0_scaffold196G40937 Striga asiatica HOM05D003958 ORTHO05D004864 3.0e-15 84.7 62 62.9
VMungo0540G0822 Vigna mungo HOM05D003958 ORTHO05D004864 3.0e-15 84.7 62 62.9
AUR62002487 Chenopodium quinoa HOM05D003958 ORTHO05D004864 3.9e-15 84.3 62 62.9
AUR62023705 Chenopodium quinoa HOM05D003958 ORTHO05D004864 3.9e-15 84.3 62 62.9
Potri.018G120500 Populus trichocarpa HOM05D003958 ORTHO05D004864 3.9e-15 84.3 58 69.0
Ah.07g203270 Amaranthus hybridus HOM05D003958 ORTHO05D004864 5.2e-15 84.0 62 56.5
Gohir.D01G222101 Gossypium hirsutum HOM05D003958 ORTHO05D004864 5.2e-15 84.0 57 68.4
RcHm_v2.0_Chr2g0172551 Rosa chinensis HOM05D003958 ORTHO05D004864 5.2e-15 84.0 63 63.5
Sabra18G0099100 Salix brachista HOM05D003958 ORTHO05D004864 5.2e-15 84.0 58 69.0
Aqoxy3G00906 Aquilegia oxysepala HOM05D003958 ORTHO05D004864 8.8e-15 83.2 62 58.1
BcaNung03113 Brassica carinata HOM05D003958 ORTHO05D004864 8.8e-15 83.2 62 59.7
SGA_v2.0_scaffold34G13865 Striga asiatica HOM05D003958 ORTHO05D004864 8.8e-15 83.2 62 61.3
Gohir.1Z049515 Gossypium hirsutum HOM05D003958 ORTHO05D015143 1.1e-14 82.8 57 64.9
Gohir.D09G250100 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.1e-14 82.8 57 64.9
Lj3g0001252 Lotus japonicus HOM05D003958 ORTHO05D004864 1.1e-14 82.8 62 59.7
Medtr6g047800 Medicago truncatula HOM05D003958 ORTHO05D004864 1.1e-14 82.8 62 61.3
Psat1g202680 Pisum sativum HOM05D003958 ORTHO05D004864 1.1e-14 82.8 62 62.9
Sabra18G0098500 Salix brachista HOM05D003958 ORTHO05D004864 2.0e-14 82.0 58 67.2
Sabra18G0100500 Salix brachista HOM05D003958 ORTHO05D004864 2.0e-14 82.0 58 67.2
Gorai.001G000100 Gossypium raimondii HOM05D003958 ORTHO05D004864 4.4e-14 80.9 52 71.2
EL10Ac9g21169 Beta vulgaris HOM05D003958 ORTHO05D004864 7.4e-14 80.1 62 58.1
HPP92_013732 Vanilla planifolia HOM05D003958 ORTHO05D004864 1.3e-13 79.3 58 60.3
Gohir.A10G243400 Gossypium hirsutum HOM05D003958 ORTHO05D004864 2.2e-13 78.6 52 69.2
Gohir.D03G178200 Gossypium hirsutum HOM05D003958 ORTHO05D004864 2.8e-13 78.2 57 61.4
Zm00001eb071120 Zea mays HOM05D003958 ORTHO05D004864 2.8e-13 78.2 63 52.4
SEGI_01237 Sequoiadendron giganteum HOM05D003958 ORTHO05D004864 4.8e-13 77.4 62 56.5
Aqoxy2G00425 Aquilegia oxysepala HOM05D003958 ORTHO05D004864 6.3e-13 77.0 62 54.8
Medtr2g014590 Medicago truncatula HOM05D003958 ORTHO05D004864 8.2e-13 76.6 63 55.6
Os04g0319600 Oryza sativa ssp. japonica HOM05D003958 ORTHO05D004864 2.4e-12 75.1 61 52.5
arahy.Tifrunner.gnm1.ann1.Z5MU8N Arachis hypogaea HOM05D003958 ORTHO05D004864 4.1e-12 74.3 62 59.7
Oeu056467.1 Olea europaea HOM05D003958 ORTHO05D004864 2.6e-11 71.6 56 60.7
Pp3c18_5220 Physcomitrium patens HOM05D003958 ORTHO05D004864 6.5e-10 67.0 60 50.0
AagrBONN_evm.TU.Sc2ySwM_344.690 Anthoceros agrestis HOM05D003958 ORTHO05D004864 8.5e-10 66.6 48 58.3
arahy.Tifrunner.gnm1.ann1.M5ZQAR Arachis hypogaea HOM05D003958 ORTHO05D004864 8.5e-10 66.6 62 54.8
SMO361G0280 Selaginella moellendorffii HOM05D003958 ORTHO05D004864 8.5e-10 66.6 47 61.7
SMO361G0823 Selaginella moellendorffii HOM05D003958 ORTHO05D004864 8.5e-10 66.6 47 61.7
Gohir.A12G000201 Gossypium hirsutum HOM05D003958 ORTHO05D004864 9.4e-09 63.2 44 65.9
Sc03g0007660 Simmondsia chinensis HOM05D003958 ORTHO05D004864 1.2e-08 62.8 62 43.5
Mapoly0053s0094 Marchantia polymorpha HOM05D003958 ORTHO05D004864 2.7e-08 61.6 63 46.0
MCO10G191 Micromonas commoda HOM05D003958 ORTHO05D004864 3.3e-06 54.7 60 43.3


User provided reference genes

Program Settings