Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc06g053490.4 Solanum lycopersicum HOM05D003922 ORTHO05D004492 1.0e-63 246.5 120 100.0
Sopen06g018570 Solanum pennellii HOM05D003922 ORTHO05D004492 2.4e-44 182.2 89 100.0
PGSC0003DMG400016330 Solanum tuberosum HOM05D003922 ORTHO05D004492 2.6e-43 178.7 89 96.6
Nitab4.5_0004700g0050 Nicotiana tabacum HOM05D003922 ORTHO05D004492 6.1e-40 167.5 91 90.1
CAN.G1401.2 Capsicum annuum HOM05D003922 ORTHO05D004492 1.4e-39 166.4 89 87.6
MSTRG.22037 Avicennia marina HOM05D003922 ORTHO05D004492 2.6e-35 152.1 89 79.8
Migut.N03060 Erythranthe guttata HOM05D003922 ORTHO05D004492 7.7e-35 150.6 89 79.8
Dinv18325 Davidia involucrata HOM05D003922 ORTHO05D004492 2.2e-34 149.1 89 79.8
Oeu015712.2 Olea europaea HOM05D003922 ORTHO05D004492 6.5e-34 147.5 89 77.5
TAR633G0046 Trochodendron aralioides HOM05D003922 ORTHO05D004492 6.5e-34 147.5 89 79.8
SGA_v2.0_scaffold19G08849 Striga asiatica HOM05D003922 ORTHO05D004492 8.5e-34 147.1 89 76.4
Solyc08g014300.4 Solanum lycopersicum HOM05D003922 ORTHO05D004492 1.1e-33 146.7 91 73.6
MSTRG.24564 Avicennia marina HOM05D003922 ORTHO05D004492 1.4e-33 146.4 89 77.5
Cc03_g14390 Coffea canephora HOM05D003922 ORTHO05D004492 4.2e-33 144.8 89 76.4
GSVIVG01035132001 Vitis vinifera HOM05D003922 ORTHO05D004492 4.2e-33 144.8 89 75.3
AT2G31725 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 7.2e-33 144.1 89 78.7
BcaB02g10413 Brassica carinata HOM05D003922 ORTHO05D004492 7.2e-33 144.1 89 78.7
Oeu050329.1 Olea europaea HOM05D003922 ORTHO05D004492 7.2e-33 144.1 89 76.4
THA.LOC104800922 Tarenaya hassleriana HOM05D003922 ORTHO05D004492 7.2e-33 144.1 89 78.7
Nn2g13969 Nelumbo nucifera HOM05D003922 ORTHO05D004492 9.4e-33 143.7 89 75.3
Thecc.04G164400 Theobroma cacao HOM05D003922 ORTHO05D004492 9.4e-33 143.7 89 76.4
Duzib268G1060 Durio zibethinus HOM05D003922 ORTHO05D004492 1.2e-32 143.3 89 76.4
Sopen08g005210 Solanum pennellii HOM05D003922 ORTHO05D004492 1.2e-32 143.3 89 73.0
C04p18050 Brassica napus HOM05D003922 ORTHO05D004492 1.6e-32 142.9 89 77.5
BolC4t23353H Brassica oleracea HOM05D003922 ORTHO05D004492 1.6e-32 142.9 89 77.5
SGA_v2.0_scaffold25G11004 Striga asiatica HOM05D003922 ORTHO05D004492 1.6e-32 142.9 89 76.4
Gohir.A09G213608 Gossypium hirsutum HOM05D003922 ORTHO05D004492 2.1e-32 142.5 89 75.3
Gohir.D09G212300 Gossypium hirsutum HOM05D003922 ORTHO05D004492 2.1e-32 142.5 89 75.3
Gorai.006G232100 Gossypium raimondii HOM05D003922 ORTHO05D004492 2.1e-32 142.5 89 75.3
Lj6A217G7 Lonicera japonica HOM05D003922 ORTHO05D004492 2.7e-32 142.1 89 75.3
AL4G26980 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 3.6e-32 141.7 89 76.4
BcaC02g11282 Brassica carinata HOM05D003922 ORTHO05D004492 3.6e-32 141.7 89 77.5
CARHR005250 Cardamine hirsuta HOM05D003922 ORTHO05D004492 3.6e-32 141.7 89 75.3
Nitab4.5_0000013g0490 Nicotiana tabacum HOM05D003922 ORTHO05D004492 3.6e-32 141.7 89 75.3
PGSC0003DMG400016054 Solanum tuberosum HOM05D003922 ORTHO05D004492 4.7e-32 141.4 89 73.0
Actinidia27120 Actinidia chinensis HOM05D003922 ORTHO05D004492 6.1e-32 141.0 89 75.3
Cpa.g.sc9.377 Carica papaya HOM05D003922 ORTHO05D004492 6.1e-32 141.0 89 75.3
THA.LOC104815872 Tarenaya hassleriana HOM05D003922 ORTHO05D004492 6.1e-32 141.0 89 76.4
CDE04G0234 Ceratophyllum demersum HOM05D003922 ORTHO05D004492 8.0e-32 140.6 89 75.3
Manes.05G137000 Manihot esculenta HOM05D003922 ORTHO05D004492 1.8e-31 139.4 89 74.2
Sp4g14200 Schrenkiella parvula HOM05D003922 ORTHO05D004492 1.8e-31 139.4 89 75.3
CSS0049854 Camellia sinensis var. sinensis HOM05D003922 ORTHO05D004492 3.0e-31 138.7 89 73.0
CARHR125410 Cardamine hirsuta HOM05D003922 ORTHO05D004492 3.9e-31 138.3 89 74.2
Potri.013G127400 Populus trichocarpa HOM05D003922 ORTHO05D004492 3.9e-31 138.3 88 75.0
Aa31LG5G5270 Aethionema arabicum HOM05D003922 ORTHO05D004492 5.2e-31 137.9 89 74.2
Aqoxy2G04156 Aquilegia oxysepala HOM05D003922 ORTHO05D004492 5.2e-31 137.9 89 71.9
Thhalv10017374m.g Eutrema salsugineum HOM05D003922 ORTHO05D004492 5.2e-31 137.9 89 74.2
SalBow6G3114 Salvia bowleyana HOM05D003922 ORTHO05D004492 6.7e-31 137.5 89 74.2
Hund03208 Selenicereus undatus HOM05D003922 ORTHO05D004492 6.7e-31 137.5 86 75.6
CAN.G759.3 Capsicum annuum HOM05D003922 ORTHO05D004492 8.8e-31 137.1 89 71.9
Thhalv10009017m.g Eutrema salsugineum HOM05D003922 ORTHO05D004492 8.8e-31 137.1 89 73.0
Sabra13G0106500 Salix brachista HOM05D003922 ORTHO05D004492 8.8e-31 137.1 88 73.9
PGR142G3702 Punica granatum HOM05D003922 ORTHO05D004492 1.1e-30 136.7 89 71.9
AL1G15640 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 2.0e-30 136.0 89 71.9
HanXRQChr11g0343091 Helianthus annuus HOM05D003922 ORTHO05D004492 2.0e-30 136.0 89 73.0
A09p67310 Brassica napus HOM05D003922 ORTHO05D004492 2.6e-30 135.6 89 73.0
ECA248G0756 Erigeron canadensis HOM05D003922 ORTHO05D004492 2.6e-30 135.6 89 73.0
Lsat_1_v5_gn_1_74581 Lactuca sativa HOM05D003922 ORTHO05D004492 2.6e-30 135.6 89 73.0
Peaxi162Scf00075g01329 Petunia axillaris HOM05D003922 ORTHO05D004492 2.6e-30 135.6 89 74.2
DCAR_005455 Daucus carota HOM05D003922 ORTHO05D004492 3.3e-30 135.2 89 70.8
AT1G05730 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 4.4e-30 134.8 89 71.9
Rhsim09G0008700 Rhododendron simsii HOM05D003922 ORTHO05D004492 4.4e-30 134.8 89 70.8
Sed0023559 Sechium edule HOM05D003922 ORTHO05D004492 5.7e-30 134.4 90 70.0
MD04G1037100 Malus domestica HOM05D003922 ORTHO05D004492 7.4e-30 134.0 89 71.9
Psat5g230680 Pisum sativum HOM05D003922 ORTHO05D004492 7.4e-30 134.0 89 69.7
TWI63G0384 Tripterygium wilfordii HOM05D003922 ORTHO05D004492 7.4e-30 134.0 89 69.7
BraA05t20315Z Brassica rapa HOM05D003922 ORTHO05D004492 9.7e-30 133.7 101 68.3
Carub.0004s1303 Capsella rubella HOM05D003922 ORTHO05D004492 9.7e-30 133.7 89 71.9
vmacro00688 Vaccinium macrocarpon HOM05D003922 ORTHO05D004492 9.7e-30 133.7 89 71.9
EL10Ac3g06102 Beta vulgaris HOM05D003922 ORTHO05D004492 1.3e-29 133.3 89 70.8
CSS0002835 Camellia sinensis var. sinensis HOM05D003922 ORTHO05D004492 1.3e-29 133.3 89 70.8
CSS0038398 Camellia sinensis var. sinensis HOM05D003922 ORTHO05D004492 1.3e-29 133.3 89 70.8
Sp1g04550 Schrenkiella parvula HOM05D003922 ORTHO05D004492 1.3e-29 133.3 89 71.9
BcaC07g42112 Brassica carinata HOM05D003922 ORTHO05D004492 1.7e-29 132.9 89 69.7
Ca_14117_v3 Cicer arietinum L. HOM05D003922 ORTHO05D004492 1.7e-29 132.9 89 68.5
Eucgr.H00289 Eucalyptus grandis HOM05D003922 ORTHO05D004492 1.7e-29 132.9 89 70.8
unitig_578.g16270 Utricularia gibba HOM05D003922 ORTHO05D004492 1.7e-29 132.9 89 68.5
CANSAT56G1338 Cannabis sativa HOM05D003922 ORTHO05D004492 2.2e-29 132.5 89 68.5
ClCG11G013550 Citrullus lanatus HOM05D003922 ORTHO05D004492 2.2e-29 132.5 89 70.8
CsaV3_5G030170 Cucumis sativus L. HOM05D003922 ORTHO05D004492 2.2e-29 132.5 89 70.8
Ciclev10022699m.g Citrus clementina HOM05D003922 ORTHO05D004492 2.8e-29 132.1 89 69.7
PSO573G0028 Papaver somniferum HOM05D003922 ORTHO05D004492 4.8e-29 131.3 90 65.6
MELO3C011855.2 Cucumis melo HOM05D003922 ORTHO05D004492 6.3e-29 131.0 89 69.7
Duzib151G1155 Durio zibethinus HOM05D003922 ORTHO05D004492 1.1e-28 130.2 89 68.5
Lalb_Chr18g0048821 Lupinus albus HOM05D003922 ORTHO05D004492 1.1e-28 130.2 89 68.5
HPP92_023724 Vanilla planifolia HOM05D003922 ORTHO05D004492 1.1e-28 130.2 89 67.4
Peaxi162Scf00579g00013 Petunia axillaris HOM05D003922 ORTHO05D004492 1.4e-28 129.8 72 86.1
Cfa015673 Carpinus fangiana HOM05D003922 ORTHO05D004492 1.8e-28 129.4 89 67.4
Lj3g0023756 Lotus japonicus HOM05D003922 ORTHO05D004492 1.8e-28 129.4 89 68.5
Prupe.1G185700 Prunus persica HOM05D003922 ORTHO05D004492 2.4e-28 129.0 89 66.3
RcHm_v2.0_Chr4g0405841 Rosa chinensis HOM05D003922 ORTHO05D004492 2.4e-28 129.0 89 66.3
TPR.G16707 Trifolium pratense HOM05D003922 ORTHO05D004492 2.4e-28 129.0 89 65.2
BraA09t42062Z Brassica rapa HOM05D003922 ORTHO05D004492 3.1e-28 128.6 96 67.7
CiPaw.01G168800 Carya illinoinensis HOM05D003922 ORTHO05D004492 4.1e-28 128.3 89 65.2
Haze_00850 Corylus avellana HOM05D003922 ORTHO05D004492 4.1e-28 128.3 89 66.3
PSO017G0931 Papaver somniferum HOM05D003922 ORTHO05D004492 4.1e-28 128.3 90 65.6
Os11g0256200 Oryza sativa ssp. japonica HOM05D003922 ORTHO05D004492 7.0e-28 127.5 89 64.0
Medtr3g009130 Medicago truncatula HOM05D003922 ORTHO05D004492 9.1e-28 127.1 89 64.0
Carub.0001s0508 Capsella rubella HOM05D003922 ORTHO05D004492 1.6e-27 126.3 89 68.5
Sc19g0002260 Simmondsia chinensis HOM05D003922 ORTHO05D004492 1.6e-27 126.3 89 65.2
QL10p056544 Quercus lobata HOM05D003922 ORTHO05D004492 2.0e-27 125.9 89 64.0
ATR0743G180 Amborella trichopoda HOM05D003922 ORTHO05D004492 3.5e-27 125.2 82 69.5
AUR62002412 Chenopodium quinoa HOM05D003922 ORTHO05D004492 3.5e-27 125.2 82 72.0
Atru.chr4.1453 Acer truncatum HOM05D003922 ORTHO05D004492 4.5e-27 124.8 89 65.2
C08p51620 Brassica napus HOM05D003922 ORTHO05D004492 5.9e-27 124.4 99 63.6
BolC8t52690H Brassica oleracea HOM05D003922 ORTHO05D004492 5.9e-27 124.4 99 63.6
arahy.Tifrunner.gnm1.ann1.D9AT9V Arachis hypogaea HOM05D003922 ORTHO05D004492 7.7e-27 124.0 89 65.2
DCAR_027517 Daucus carota HOM05D003922 ORTHO05D004492 7.7e-27 124.0 96 58.3
FvH4_3g34590 Fragaria vesca HOM05D003922 ORTHO05D004492 1.3e-26 123.2 82 68.3
FAN11G1624 Fragaria x ananassa HOM05D003922 ORTHO05D004492 1.3e-26 123.2 82 68.3
FAN16G1833 Fragaria x ananassa HOM05D003922 ORTHO05D004492 1.3e-26 123.2 82 68.3
FAN21G3935 Fragaria x ananassa HOM05D003922 ORTHO05D004492 1.3e-26 123.2 82 68.3
FAN25G1394 Fragaria x ananassa HOM05D003922 ORTHO05D004492 1.3e-26 123.2 82 68.3
Glyma.02G058200 Glycine max HOM05D003922 ORTHO05D004492 1.3e-26 123.2 89 61.8
Glyma.06G319900 Glycine max HOM05D003922 ORTHO05D004492 1.3e-26 123.2 89 61.8
FAN02G1921 Fragaria x ananassa HOM05D003922 ORTHO05D004492 1.7e-26 122.9 84 66.7
FAN06G3125 Fragaria x ananassa HOM05D003922 ORTHO05D004492 1.7e-26 122.9 84 66.7
VMungo1080G1004 Vigna mungo HOM05D003922 ORTHO05D004492 1.7e-26 122.9 89 61.8
Haze_00864 Corylus avellana HOM05D003922 ORTHO05D004492 2.9e-26 122.1 91 63.7
arahy.Tifrunner.gnm1.ann1.1Q5EFH Arachis hypogaea HOM05D003922 ORTHO05D004492 3.8e-26 121.7 89 62.9
Phvul.005G007000 Phaseolus vulgaris HOM05D003922 ORTHO05D004492 1.1e-25 120.2 89 61.8
Glyma.04G117900 Glycine max HOM05D003922 ORTHO05D004492 1.5e-25 119.8 89 61.8
CDE09G1276 Ceratophyllum demersum HOM05D003922 ORTHO05D004492 2.5e-25 119.0 89 62.9
COL.COLO4_38113 Corchorus olitorius HOM05D003922 ORTHO05D004492 2.5e-25 119.0 74 74.3
Psat3g002600 Pisum sativum HOM05D003321 ORTHO05D004492 1.2e-24 116.7 89 60.7
arahy.Tifrunner.gnm1.ann1.H4TYTD Arachis hypogaea HOM05D003922 ORTHO05D004492 3.6e-24 115.2 83 65.1
AT2G43720 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 4.7e-24 114.8 83 62.7
THA.LOC104804105 Tarenaya hassleriana HOM05D003922 ORTHO05D004492 4.7e-24 114.8 92 59.8
Zm00001eb169100 Zea mays HOM05D003922 ORTHO05D004492 8.0e-24 114.0 85 58.8
BcaC02g07156 Brassica carinata HOM05D000941 ORTHO05D004492 3.0e-23 112.1 91 56.0
Zm00001eb169120 Zea mays HOM05D003922 ORTHO05D004492 3.0e-23 112.1 81 59.3
AL4G42550 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 4.0e-23 111.7 83 61.4
BolC4t28571H Brassica oleracea HOM05D003922 ORTHO05D004492 5.2e-23 111.3 89 57.3
CARHR138910 Cardamine hirsuta HOM05D003922 ORTHO05D004492 1.5e-22 109.8 83 61.4
SEGI_40113 Sequoiadendron giganteum HOM05D003922 ORTHO05D004492 4.4e-22 108.2 82 54.9
Sp4g25790 Schrenkiella parvula HOM05D003922 ORTHO05D004492 5.7e-22 107.8 83 59.0
C04p70710 Brassica napus HOM05D003922 ORTHO05D004492 1.3e-21 106.7 90 56.7
Carub.0004s2626 Capsella rubella HOM05D003922 ORTHO05D004492 1.3e-21 106.7 87 54.0
A04p33020 Brassica napus HOM05D003922 ORTHO05D004492 2.2e-21 105.9 82 58.5
BraA04t18761Z Brassica rapa HOM05D003922 ORTHO05D004492 2.2e-21 105.9 82 58.5
Thhalv10001669m.g Eutrema salsugineum HOM05D003922 ORTHO05D004492 2.2e-21 105.9 83 57.8
CiPaw.02G099200 Carya illinoinensis HOM05D003922 ORTHO05D004492 8.3e-21 104.0 82 56.1
Lj6A207G21 Lonicera japonica HOM05D003922 ORTHO05D004492 1.1e-20 103.6 132 47.0
BcaB06g29344 Brassica carinata HOM05D003922 ORTHO05D004492 2.4e-20 102.4 82 57.3
Glyma.06G288100 Glycine max HOM05D003922 ORTHO05D004492 2.7e-19 99.0 89 55.1
Glyma.06G288300 Glycine max HOM05D003922 ORTHO05D004492 2.7e-19 99.0 89 55.1
AT1G05740 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 4.5e-19 98.2 100 49.0
BcaC07g42117 Brassica carinata HOM05D003922 ORTHO05D004492 2.2e-18 95.9 89 57.3
Nitab4.5_0007474g0040 Nicotiana tabacum HOM05D003922 ORTHO05D004492 4.2e-17 91.7 46 87.0
MBI07_g11491_MAGBIO Magnolia biondii HOM05D003922 ORTHO05D004492 1.6e-16 89.7 82 57.3
Lj3P164T1 Lonicera japonica HOM05D003922 ORTHO05D004492 1.5e-14 83.2 47 78.7
Lju359P1T4 Lonicera japonica HOM05D003922 ORTHO05D004492 1.5e-14 83.2 47 78.7
Glyma.06G320000 Glycine max HOM05D003922 ORTHO05D004492 4.4e-14 81.6 83 43.4
A05p13780 Brassica napus HOM05D003922 ORTHO05D004492 1.3e-13 80.1 46 73.9
BcaC07g42114 Brassica carinata HOM05D003922 ORTHO05D004492 3.7e-13 78.6 56 64.3
Pp3c22_16840 Physcomitrium patens HOM05D003922 ORTHO05D004492 3.7e-13 78.6 78 48.7
arahy.Tifrunner.gnm1.ann1.DMY77W Arachis hypogaea HOM05D003922 ORTHO05D004492 8.3e-13 77.4 88 43.2
BcaB05g24674 Brassica carinata HOM05D001689 ORTHO05D004492 5.4e-12 74.7 51 64.7
Aa31LG1G25440 Aethionema arabicum HOM05D003922 ORTHO05D004492 1.0e-10 70.5 54 57.4
AagrBONN_evm.TU.Sc2ySwM_228.3693 Anthoceros agrestis HOM05D003922 ORTHO05D004492 1.7e-10 69.7 80 36.2
Glyma.06G288000 Glycine max HOM05D003922 ORTHO05D004492 1.7e-10 69.7 84 39.3
SMO174G0129 Selaginella moellendorffii HOM05D003922 ORTHO05D004492 3.3e-09 65.5 81 37.0
BcaB05g25136 Brassica carinata HOM05D003922 ORTHO05D004492 4.2e-09 65.1 44 61.4
SMO174G0123 Selaginella moellendorffii HOM05D003922 ORTHO05D004492 1.6e-08 63.2 76 32.9
Carub.0001s0509 Capsella rubella HOM05D003922 ORTHO05D004492 1.4e-07 60.1 52 48.1
AUR62023777 Chenopodium quinoa HOM05D003922 ORTHO05D004492 2.3e-07 59.3 46 65.2
arahy.Tifrunner.gnm1.ann1.GG9VXM Arachis hypogaea HOM05D003922 ORTHO05D004492 5.2e-07 58.2 43 67.4
arahy.Tifrunner.gnm1.ann1.V6LTI0 Arachis hypogaea HOM05D003922 ORTHO05D004492 5.2e-07 58.2 46 54.3
SMO116G0121 Selaginella moellendorffii HOM05D003922 ORTHO05D004492 4.4e-06 55.1 52 40.4


User provided reference genes

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