Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc06g053460.3 Solanum lycopersicum HOM05D000384 ORTHO05D006260 2.7e-59 231.9 124 100.0
Sopen06g018540 Solanum pennellii HOM05D000384 ORTHO05D006260 2.7e-59 231.9 124 100.0
CAN.G1280.23 Capsicum annuum HOM05D000384 ORTHO05D006260 1.9e-57 225.7 125 98.4
PGSC0003DMG400016332 Solanum tuberosum HOM05D000384 ORTHO05D006260 1.9e-57 225.7 125 98.4
CAN.G136.5 Capsicum annuum HOM05D000384 ORTHO05D006260 2.5e-57 225.3 124 96.8
Peaxi162Scf00579g00001 Petunia axillaris HOM05D000384 ORTHO05D006260 6.9e-55 217.2 125 93.6
Nitab4.5_0007474g0030 Nicotiana tabacum HOM05D000384 ORTHO05D006260 2.0e-54 215.7 125 92.8
Nitab4.5_0007368g0020 Nicotiana tabacum HOM05D000384 ORTHO05D006260 3.4e-54 214.9 125 92.0
Actinidia40142 Actinidia chinensis HOM05D000384 ORTHO05D006260 1.7e-53 212.6 124 88.7
Cc03_g03830 Coffea canephora HOM05D000384 ORTHO05D006260 1.4e-52 209.5 124 87.9
CSS0003915 Camellia sinensis var. sinensis HOM05D000384 ORTHO05D006260 2.5e-52 208.8 124 87.1
CSS0025710 Camellia sinensis var. sinensis HOM05D000384 ORTHO05D006260 2.5e-52 208.8 124 87.1
QL06p002227 Quercus lobata HOM05D000384 ORTHO05D006260 2.5e-52 208.8 124 88.7
Lj3E734T1 Lonicera japonica HOM05D000384 ORTHO05D006260 3.2e-52 208.4 124 88.7
CSS0048526 Camellia sinensis var. sinensis HOM05D000384 ORTHO05D006260 4.2e-52 208.0 124 86.3
RcHm_v2.0_Chr1g0362551 Rosa chinensis HOM05D000384 ORTHO05D006260 2.7e-51 205.3 125 88.0
RcHm_v2.0_Chr4g0387021 Rosa chinensis HOM05D000384 ORTHO05D006260 2.7e-51 205.3 125 88.0
TWI09G1519 Tripterygium wilfordii HOM05D000384 ORTHO05D006260 3.5e-51 204.9 125 87.2
TWI53G0398 Tripterygium wilfordii HOM05D000384 ORTHO05D006260 4.6e-51 204.5 125 89.6
CANSAT64G0565 Cannabis sativa HOM05D000384 ORTHO05D006260 6.1e-51 204.1 126 85.7
Prupe.1G014300 Prunus persica HOM05D000384 ORTHO05D006260 6.1e-51 204.1 125 88.0
RcHm_v2.0_Chr4g0416141 Rosa chinensis HOM05D000384 ORTHO05D006260 6.1e-51 204.1 125 87.2
MSTRG.24739 Avicennia marina HOM05D000384 ORTHO05D006260 1.3e-50 203.0 125 84.8
Dinv44537 Davidia involucrata HOM05D000384 ORTHO05D000468 1.3e-50 203.0 121 90.1
Glyma.06G316000 Glycine max HOM05D000384 ORTHO05D006260 1.3e-50 203.0 125 87.2
Glyma.13G124100 Glycine max HOM05D000384 ORTHO05D006260 1.3e-50 203.0 125 87.2
Lj3g0015206 Lotus japonicus HOM05D000384 ORTHO05D006260 1.3e-50 203.0 125 86.4
MD16G1194400 Malus domestica HOM05D000384 ORTHO05D006260 1.3e-50 203.0 123 88.6
Duzib128G1753 Durio zibethinus HOM05D000384 ORTHO05D006260 1.8e-50 202.6 123 87.0
Ciclev10006154m.g Citrus clementina HOM05D000384 ORTHO05D006260 2.3e-50 202.2 125 87.2
GSVIVG01017982001 Vitis vinifera HOM05D000384 ORTHO05D006260 2.3e-50 202.2 125 86.4
Potri.008G153900 Populus trichocarpa HOM05D000384 ORTHO05D006260 3.9e-50 201.4 125 86.4
Haze_00893 Corylus avellana HOM05D000384 ORTHO05D006260 5.1e-50 201.1 125 85.6
FAN07G0857 Fragaria x ananassa HOM05D000384 ORTHO05D006260 5.1e-50 201.1 125 85.6
Glyma.05G087300 Glycine max HOM05D000384 ORTHO05D006260 5.1e-50 201.1 125 86.4
Rhsim04G0201900 Rhododendron simsii HOM05D000384 ORTHO05D006260 5.1e-50 201.1 124 83.1
DCAR_024164 Daucus carota HOM05D000384 ORTHO05D006260 8.7e-50 200.3 123 83.7
COL.COLO4_10907 Corchorus olitorius HOM05D000384 ORTHO05D006260 1.1e-49 199.9 125 84.8
Phvul.008G161600 Phaseolus vulgaris HOM05D000384 ORTHO05D006260 1.1e-49 199.9 125 84.8
Manes.03G178300 Manihot esculenta HOM05D000384 ORTHO05D006260 1.5e-49 199.5 120 86.7
Thecc.10G059100 Theobroma cacao HOM05D000384 ORTHO05D006260 1.5e-49 199.5 123 86.2
VMungo0720G1921 Vigna mungo HOM05D000384 ORTHO05D006260 1.5e-49 199.5 123 85.4
arahy.Tifrunner.gnm1.ann1.JHWM2T Arachis hypogaea HOM05D000384 ORTHO05D006260 1.9e-49 199.1 124 84.7
arahy.Tifrunner.gnm1.ann1.U3DZXE Arachis hypogaea HOM05D000384 ORTHO05D006260 1.9e-49 199.1 124 84.7
Duzib114G0643 Durio zibethinus HOM05D000384 ORTHO05D006260 2.5e-49 198.7 123 85.4
TAR636G3061 Trochodendron aralioides HOM05D000384 ORTHO05D006260 2.5e-49 198.7 125 84.8
Cpa.g.sc58.101 Carica papaya HOM05D000384 ORTHO05D006260 3.3e-49 198.4 125 85.6
DCAR_027219 Daucus carota HOM05D000384 ORTHO05D006260 3.3e-49 198.4 123 82.9
Nn3g18529 Nelumbo nucifera HOM05D000384 ORTHO05D006260 3.3e-49 198.4 122 85.2
ClCG05G005160 Citrullus lanatus HOM05D000384 ORTHO05D006260 4.3e-49 198.0 124 86.3
MBI11_g07539_MAGBIO Magnolia biondii HOM05D000384 ORTHO05D006260 4.3e-49 198.0 125 84.0
Sc19g0004110 Simmondsia chinensis HOM05D000384 ORTHO05D006260 4.3e-49 198.0 124 84.7
Atru.chr4.720 Acer truncatum HOM05D000384 ORTHO05D006260 7.4e-49 197.2 125 84.8
arahy.Tifrunner.gnm1.ann1.T2NEZJ Arachis hypogaea HOM05D000384 ORTHO05D006260 7.4e-49 197.2 124 83.9
Eucgr.H03463 Eucalyptus grandis HOM05D000384 ORTHO05D006260 7.4e-49 197.2 120 85.8
FvH4_4g15650 Fragaria vesca HOM05D000384 ORTHO05D006260 7.4e-49 197.2 125 84.8
FAN12G1863 Fragaria x ananassa HOM05D000384 ORTHO05D006260 7.4e-49 197.2 125 84.8
FAN17G0123 Fragaria x ananassa HOM05D000384 ORTHO05D006260 7.4e-49 197.2 125 84.0
CsaV3_5G038350 Cucumis sativus L. HOM05D000384 ORTHO05D006260 9.7e-49 196.8 124 85.5
Oeu031225.1 Olea europaea HOM05D000384 ORTHO05D006260 9.7e-49 196.8 125 84.0
Oeu031229.1 Olea europaea HOM05D000384 ORTHO05D006260 9.7e-49 196.8 125 84.0
Cfa015651 Carpinus fangiana HOM05D000384 ORTHO05D006260 1.3e-48 196.4 126 84.9
CiPaw.02G097700 Carya illinoinensis HOM05D000384 ORTHO05D006260 1.3e-48 196.4 125 83.2
Lalb_Chr19g0132471 Lupinus albus HOM05D000384 ORTHO05D006260 1.3e-48 196.4 125 83.2
Aqoxy1G01533 Aquilegia oxysepala HOM05D000384 ORTHO05D006260 1.6e-48 196.1 125 82.4
Aqoxy5G00465 Aquilegia oxysepala HOM05D000384 ORTHO05D006260 1.6e-48 196.1 125 82.4
arahy.Tifrunner.gnm1.ann1.K8JXLT Arachis hypogaea HOM05D000384 ORTHO05D006260 1.6e-48 196.1 123 84.6
SalBow3G1001 Salvia bowleyana HOM05D000384 ORTHO05D006260 1.6e-48 196.1 122 83.6
EL10Ac4g08427 Beta vulgaris HOM05D000384 ORTHO05D006260 2.2e-48 195.7 124 81.5
FAN22G1586 Fragaria x ananassa HOM05D000384 ORTHO05D006260 2.2e-48 195.7 125 82.4
Ca_14031_v3 Cicer arietinum L. HOM05D000384 ORTHO05D006260 2.8e-48 195.3 125 81.6
Gohir.A10G210600 Gossypium hirsutum HOM05D000384 ORTHO05D006260 2.8e-48 195.3 125 84.0
Gohir.D10G218900 Gossypium hirsutum HOM05D000384 ORTHO05D006260 2.8e-48 195.3 125 84.0
Gorai.011G245600 Gossypium raimondii HOM05D000384 ORTHO05D006260 2.8e-48 195.3 125 84.0
Sabra08G0117400 Salix brachista HOM05D000384 ORTHO05D006260 3.7e-48 194.9 124 83.9
AUR62013951 Chenopodium quinoa HOM05D000384 ORTHO05D006260 4.8e-48 194.5 123 81.3
AUR62019660 Chenopodium quinoa HOM05D000384 ORTHO05D006260 4.8e-48 194.5 123 81.3
TPR.G25531 Trifolium pratense HOM05D000384 ORTHO05D006260 4.8e-48 194.5 125 81.6
Os12g0485800 Oryza sativa ssp. japonica HOM05D000384 ORTHO05D006260 8.2e-48 193.7 120 84.2
Potri.001G240200 Populus trichocarpa HOM05D000384 ORTHO05D006260 8.2e-48 193.7 125 82.4
Sabra16G0144900 Salix brachista HOM05D000384 ORTHO05D006260 8.2e-48 193.7 125 82.4
Medtr3g007250 Medicago truncatula HOM05D000384 ORTHO05D006260 1.1e-47 193.4 125 80.8
Sed0018578 Sechium edule HOM05D000384 ORTHO05D006260 1.1e-47 193.4 124 83.9
MELO3C022017.2 Cucumis melo HOM05D000384 ORTHO05D006260 1.4e-47 193.0 124 84.7
SGA_v2.0_scaffold522G52709 Striga asiatica HOM05D000384 ORTHO05D006260 1.4e-47 193.0 125 82.4
Psat0s3755g0120 Pisum sativum HOM05D000384 ORTHO05D006260 1.8e-47 192.6 125 80.8
Atru.chr4.2459 Acer truncatum HOM05D000384 ORTHO05D006260 2.4e-47 192.2 124 81.5
Sc13g0004430 Simmondsia chinensis HOM05D000384 ORTHO05D006260 2.4e-47 192.2 123 80.5
Hma1.2p1_0745F.1_g212050 Hydrangea macrophylla HOM05D000384 ORTHO05D006260 5.3e-47 191.0 121 83.5
PGR004G2612 Punica granatum HOM05D000384 ORTHO05D006260 1.2e-46 189.9 121 83.5
CiPaw.01G166600 Carya illinoinensis HOM05D000384 ORTHO05D006260 1.5e-46 189.5 125 80.0
ECA247G4089 Erigeron canadensis HOM05D000384 ORTHO05D006260 1.5e-46 189.5 122 82.8
Migut.N00188 Erythranthe guttata HOM05D000384 ORTHO05D006260 3.4e-46 188.3 122 80.3
Lsat_1_v5_gn_9_18461 Lactuca sativa HOM05D000384 ORTHO05D006260 3.4e-46 188.3 122 82.0
Hund25029 Selenicereus undatus HOM05D000384 ORTHO05D006260 3.4e-46 188.3 124 80.6
HanXRQChr08g0229211 Helianthus annuus HOM05D000384 ORTHO05D006260 4.5e-46 188.0 122 82.0
Zm00001eb114150 Zea mays HOM05D000384 ORTHO05D006260 5.9e-46 187.6 121 79.3
Os11g0568500 Oryza sativa ssp. japonica HOM05D000384 ORTHO05D006260 1.0e-45 186.8 122 80.3
Aa31LG8G9040 Aethionema arabicum HOM05D000384 ORTHO05D006260 1.3e-45 186.4 124 77.4
THA.LOC104803028 Tarenaya hassleriana HOM05D000384 ORTHO05D006260 1.3e-45 186.4 125 77.6
unitig_699.g19994 Utricularia gibba HOM05D000384 ORTHO05D006260 1.3e-45 186.4 123 80.5
CARHR098380 Cardamine hirsuta HOM05D000384 ORTHO05D006260 2.2e-45 185.7 124 77.4
Zm00001eb415970 Zea mays HOM05D000384 ORTHO05D006260 5.0e-45 184.5 121 76.9
PSO210G4801 Papaver somniferum HOM05D000384 ORTHO05D006260 6.5e-45 184.1 120 79.2
PSO832G3877 Papaver somniferum HOM05D000384 ORTHO05D006260 8.5e-45 183.7 120 79.2
SEGI_35673 Sequoiadendron giganteum HOM05D000384 ORTHO05D006260 1.9e-44 182.6 120 79.2
THA.LOC104822267 Tarenaya hassleriana HOM05D000384 ORTHO05D006260 2.5e-44 182.2 125 76.8
HanXRQChr04g0103741 Helianthus annuus HOM05D000384 ORTHO05D006260 5.5e-44 181.0 118 81.4
Thhalv10021707m.g Eutrema salsugineum HOM05D000384 ORTHO05D006260 1.2e-43 179.9 124 73.4
BcaC01g03444 Brassica carinata HOM05D000384 ORTHO05D006260 1.0e-42 176.8 125 72.8
BraA03t13424Z Brassica rapa HOM05D000384 ORTHO05D006260 1.8e-42 176.0 126 72.2
AT3G22480 Arabidopsis thaliana HOM05D000384 ORTHO05D006260 2.3e-42 175.6 123 73.2
A03p42770 Brassica napus HOM05D000384 ORTHO05D006260 2.3e-42 175.6 127 71.7
C03p52530 Brassica napus HOM05D000384 ORTHO05D006260 2.3e-42 175.6 125 72.0
BcaB06g26358 Brassica carinata HOM05D000384 ORTHO05D006260 3.9e-42 174.9 123 73.2
BolC3t17522H Brassica oleracea HOM05D000384 ORTHO05D006260 6.7e-42 174.1 125 71.2
Oeu050282.1 Olea europaea HOM05D000384 ORTHO05D006260 6.7e-42 174.1 125 75.2
BcaB04g19201 Brassica carinata HOM05D000384 ORTHO05D006260 8.8e-42 173.7 122 73.0
BcaC05g28063 Brassica carinata HOM05D000384 ORTHO05D006260 7.4e-41 170.6 124 72.6
C05p40760 Brassica napus HOM05D000384 ORTHO05D006260 7.4e-41 170.6 124 72.6
BolC5t32821H Brassica oleracea HOM05D000384 ORTHO05D006260 7.4e-41 170.6 124 72.6
ATR0083G069 Amborella trichopoda HOM05D000384 ORTHO05D006260 1.3e-40 169.9 125 72.0
AL3G36790 Arabidopsis lyrata HOM05D000384 ORTHO05D006260 1.3e-40 169.9 123 73.2
A05p26280 Brassica napus HOM05D000384 ORTHO05D006260 1.7e-40 169.5 123 71.5
Carub.0003s2264 Capsella rubella HOM05D000384 ORTHO05D006260 2.8e-40 168.7 124 72.6
BraA05t21503Z Brassica rapa HOM05D000384 ORTHO05D006260 3.7e-40 168.3 119 73.1
Mapoly0049s0105 Marchantia polymorpha HOM05D000384 ORTHO05D006260 4.5e-38 161.4 121 67.8
C05p40680 Brassica napus HOM05D000384 ORTHO05D006260 2.2e-37 159.1 124 70.2
BolC5t32807H Brassica oleracea HOM05D000384 ORTHO05D006260 2.2e-37 159.1 124 70.2
SMO169G0080 Selaginella moellendorffii HOM05D000384 ORTHO05D006260 5.0e-37 157.9 127 63.8
AagrBONN_evm.TU.Sc2ySwM_344.1360 Anthoceros agrestis HOM05D000384 ORTHO05D006260 8.5e-37 157.1 125 63.2
Sp3g20250 Schrenkiella parvula HOM05D000384 ORTHO05D006260 3.2e-36 155.2 124 66.1
TAR365G0396 Trochodendron aralioides HOM05D000384 ORTHO05D006260 9.4e-36 153.7 96 83.3
Ah.04g163960 Amaranthus hybridus HOM05D000384 ORTHO05D006260 1.5e-33 146.4 120 67.5
CBR_g42063 Chara braunii HOM05D000384 ORTHO05D006260 1.4e-31 139.8 119 59.7
Pp3c23_10300 Physcomitrium patens HOM05D000384 ORTHO05D006260 1.2e-30 136.7 115 61.7
HPP92_018608 Vanilla planifolia HOM05D000384 ORTHO05D006260 8.5e-29 130.6 120 61.7
AagrBONN_evm.TU.Sc2ySwM_228.3583 Anthoceros agrestis HOM05D000384 ORTHO05D006260 1.9e-28 129.4 93 64.5
Pp3c24_3120 Physcomitrium patens HOM05D000384 ORTHO05D006260 1.8e-26 122.9 116 56.9
Hma1.2p1_0602F.1_g187390 Hydrangea macrophylla HOM05D000384 ORTHO05D006260 8.8e-26 120.6 109 64.2
HPP92_018610 Vanilla planifolia HOM05D000384 ORTHO05D006260 2.1e-19 99.4 66 75.8
Cre07.g342250 Chlamydomonas reinhardtii HOM05D000384 ORTHO05D006260 1.8e-18 96.3 124 41.1
MCO05G108 Micromonas commoda HOM05D000384 ORTHO05D006260 5.2e-18 94.7 116 41.4
BcaC05g28047 Brassica carinata HOM05D000384 ORTHO05D006260 7.5e-17 90.9 81 61.7
PRCOL_00004688 Prasinoderma coloniale HOM05D000384 ORTHO05D006260 7.7e-14 80.9 86 48.8
CDE09G0159 Ceratophyllum demersum HOM05D000384 ORTHO05D006260 3.5e-06 55.5 32 87.5


User provided reference genes

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