Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc06g053430.4 Solanum lycopersicum HOM05D006500 ORTHO05D008028 2.7e-97 358.6 176 100.0
Sopen06g018490 Solanum pennellii HOM05D006500 ORTHO05D008028 2.4e-85 318.9 157 100.0
PGSC0003DMG400016334 Solanum tuberosum HOM05D006500 ORTHO05D008028 2.4e-85 318.9 157 100.0
CAN.G136.13 Capsicum annuum HOM05D006500 ORTHO05D008028 7.2e-82 307.4 157 95.5
Nitab4.5_0001586g0010 Nicotiana tabacum HOM05D006500 ORTHO05D008028 9.7e-79 297.0 155 91.0
Nitab4.5_0002544g0040 Nicotiana tabacum HOM05D006500 ORTHO05D008028 7.0e-77 290.8 157 89.2
Peaxi162Scf00180g00116 Petunia axillaris HOM05D006500 ORTHO05D008028 4.7e-73 278.1 158 86.1
Rhsim09G0010200 Rhododendron simsii HOM05D006500 ORTHO05D008028 2.3e-67 259.2 160 75.6
SalBow3G2241 Salvia bowleyana HOM05D006500 ORTHO05D008028 1.9e-66 256.1 156 81.4
QL10p055774 Quercus lobata HOM05D006500 ORTHO05D008028 5.5e-66 254.6 153 79.7
MSTRG.4301 Avicennia marina HOM05D006500 ORTHO05D008028 7.2e-66 254.2 137 86.9
vmacro00698 Vaccinium macrocarpon HOM05D006500 ORTHO05D008028 1.2e-65 253.4 154 75.3
Oeu050336.1 Olea europaea HOM05D006500 ORTHO05D008028 1.6e-65 253.1 153 79.7
GSVIVG01038143001 Vitis vinifera HOM05D006500 ORTHO05D008028 2.8e-65 252.3 148 81.1
TAR365G1104 Trochodendron aralioides HOM05D006500 ORTHO05D008028 8.0e-65 250.8 159 77.4
MD04G1049100 Malus domestica HOM05D006500 ORTHO05D008028 1.0e-64 250.4 163 74.2
MD17G1177800 Malus domestica HOM05D006500 ORTHO05D008028 1.4e-64 250.0 159 76.1
Psat7g120240 Pisum sativum HOM05D006500 ORTHO05D008028 1.4e-64 250.0 161 73.3
Dinv33205 Davidia involucrata HOM05D006500 ORTHO05D008028 1.8e-64 249.6 154 77.3
Oeu015723.1 Olea europaea HOM05D006500 ORTHO05D008028 2.3e-64 249.2 137 83.9
SGA_v2.0_scaffold283G46959 Striga asiatica HOM05D006500 ORTHO05D008028 2.3e-64 249.2 151 78.8
CSS0014789 Camellia sinensis var. sinensis HOM05D006500 ORTHO05D008028 3.0e-64 248.8 155 74.2
Potri.019G112100 Populus trichocarpa HOM05D006500 ORTHO05D008028 3.0e-64 248.8 147 79.6
Actinidia27113 Actinidia chinensis HOM05D006500 ORTHO05D008028 5.2e-64 248.1 154 74.0
Phvul.003G296700 Phaseolus vulgaris HOM05D006500 ORTHO05D008028 5.2e-64 248.1 146 80.8
Cc03_g14120 Coffea canephora HOM05D006500 ORTHO05D008028 6.8e-64 247.7 152 76.3
Glyma.02G137600 Glycine max HOM05D006500 ORTHO05D008028 6.8e-64 247.7 151 78.1
arahy.Tifrunner.gnm1.ann1.A3K5YX Arachis hypogaea HOM05D006500 ORTHO05D008028 8.8e-64 247.3 168 71.4
CiPaw.02G100400 Carya illinoinensis HOM05D006500 ORTHO05D008028 8.8e-64 247.3 159 75.5
Cpa.g.sc9.364 Carica papaya HOM05D006500 ORTHO05D008028 1.2e-63 246.9 158 75.9
Nn1g09644 Nelumbo nucifera HOM05D006500 ORTHO05D008028 1.2e-63 246.9 160 73.1
Migut.G01179 Erythranthe guttata HOM05D006500 ORTHO05D008028 1.5e-63 246.5 154 74.7
Hma1.2p1_0108F.1_g051720 Hydrangea macrophylla HOM05D006500 ORTHO05D008028 1.5e-63 246.5 149 77.9
Glyma.07G207800 Glycine max HOM05D006500 ORTHO05D008028 2.0e-63 246.1 153 79.1
ClCG06G001100 Citrullus lanatus HOM05D006500 ORTHO05D008028 2.6e-63 245.7 157 73.9
FAN17G0772 Fragaria x ananassa HOM05D006500 ORTHO05D008028 2.6e-63 245.7 152 75.7
Prupe.1G207200 Prunus persica HOM05D006500 ORTHO05D008028 2.6e-63 245.7 155 77.4
Sabra19G0108100 Salix brachista HOM05D006500 ORTHO05D008028 2.6e-63 245.7 147 78.2
VMungo0251G2572 Vigna mungo HOM05D006500 ORTHO05D008028 2.6e-63 245.7 153 79.1
CANSAT56G1821 Cannabis sativa HOM05D006500 ORTHO05D008028 3.4e-63 245.4 134 84.3
COL.COLO4_08138 Corchorus olitorius HOM05D006500 ORTHO05D008028 3.4e-63 245.4 149 75.2
Lj4g0023361 Lotus japonicus HOM05D006500 ORTHO05D008028 3.4e-63 245.4 151 78.1
TWI38G1400 Tripterygium wilfordii HOM05D006500 ORTHO05D008028 4.4e-63 245.0 152 76.3
arahy.Tifrunner.gnm1.ann1.SHKR8E Arachis hypogaea HOM05D006500 ORTHO05D008028 7.5e-63 244.2 168 70.8
DCAR_023930 Daucus carota HOM05D006500 ORTHO05D008028 7.5e-63 244.2 149 77.9
Medtr4g087310 Medicago truncatula HOM05D006500 ORTHO05D008028 7.5e-63 244.2 158 74.1
Manes.11G129200 Manihot esculenta HOM05D006500 ORTHO05D008028 9.8e-63 243.8 161 72.7
RcHm_v2.0_Chr4g0405941 Rosa chinensis HOM05D006500 ORTHO05D008028 9.8e-63 243.8 148 79.1
AT1G05720 Arabidopsis thaliana HOM05D006500 ORTHO05D008028 1.3e-62 243.4 160 69.4
Sed0015541 Sechium edule HOM05D006500 ORTHO05D008028 1.3e-62 243.4 151 77.5
FvH4_4g10450 Fragaria vesca HOM05D006500 ORTHO05D008028 1.7e-62 243.0 152 74.3
Lalb_Chr09g0328101 Lupinus albus HOM05D006500 ORTHO05D008028 2.2e-62 242.7 137 81.0
CiPaw.01G170700 Carya illinoinensis HOM05D006500 ORTHO05D008028 2.8e-62 242.3 152 75.7
Thecc.04G165600 Theobroma cacao HOM05D006500 ORTHO05D008028 3.7e-62 241.9 134 80.6
Carub.0001s0507 Capsella rubella HOM05D006500 ORTHO05D008028 4.9e-62 241.5 152 72.4
FAN12G2511 Fragaria x ananassa HOM05D006500 ORTHO05D008028 6.3e-62 241.1 152 73.7
MELO3C022425.2 Cucumis melo HOM05D006500 ORTHO05D008028 8.3e-62 240.7 155 74.2
Potri.013G126900 Populus trichocarpa HOM05D006500 ORTHO05D008028 8.3e-62 240.7 151 74.2
CsaV3_6G007030 Cucumis sativus L. HOM05D006500 ORTHO05D008028 1.1e-61 240.4 137 81.8
BraA08t35535Z Brassica rapa HOM05D006500 ORTHO05D008028 1.4e-61 240.0 165 68.5
Thhalv10008926m.g Eutrema salsugineum HOM05D006500 ORTHO05D008028 1.4e-61 240.0 167 68.9
BcaC07g42119 Brassica carinata HOM05D006500 ORTHO05D008028 1.8e-61 239.6 149 73.8
Sp1g04540 Schrenkiella parvula HOM05D006500 ORTHO05D008028 1.8e-61 239.6 149 73.2
AL1G15630 Arabidopsis lyrata HOM05D006500 ORTHO05D008028 2.4e-61 239.2 154 72.1
Hund03202 Selenicereus undatus HOM05D006500 ORTHO05D008028 2.4e-61 239.2 154 72.1
AUR62023794 Chenopodium quinoa HOM05D006500 ORTHO05D008028 3.1e-61 238.8 155 70.3
Duzib268G0518 Durio zibethinus HOM05D006500 ORTHO05D008028 3.1e-61 238.8 133 80.5
Atru.chr4.1419 Acer truncatum HOM05D006500 ORTHO05D008028 4.1e-61 238.4 152 73.7
Gohir.A05G327700 Gossypium hirsutum HOM05D006500 ORTHO05D008028 4.1e-61 238.4 152 73.0
Eucgr.A00110 Eucalyptus grandis HOM05D006500 ORTHO05D008028 5.4e-61 238.0 156 70.5
Eucgr.A00287 Eucalyptus grandis HOM05D006500 ORTHO05D008028 5.4e-61 238.0 156 70.5
Gohir.D05G327900 Gossypium hirsutum HOM05D006500 ORTHO05D008028 5.4e-61 238.0 140 76.4
Gorai.009G351800 Gossypium raimondii HOM05D006500 ORTHO05D008028 5.4e-61 238.0 140 76.4
Sed0014008 Sechium edule HOM05D006500 ORTHO05D008028 5.4e-61 238.0 137 80.3
Aqoxy2G00124 Aquilegia oxysepala HOM05D006500 ORTHO05D008028 7.0e-61 237.7 137 80.3
BolC8t47013H Brassica oleracea HOM05D006500 ORTHO05D008028 9.2e-61 237.3 159 68.6
AUR62002395 Chenopodium quinoa HOM05D006500 ORTHO05D008028 9.2e-61 237.3 155 70.3
A08p36310 Brassica napus HOM05D006500 ORTHO05D008028 1.2e-60 236.9 165 67.9
C08p02210 Brassica napus HOM05D006500 ORTHO05D008028 1.2e-60 236.9 159 68.6
CARHR005240 Cardamine hirsuta HOM05D006500 ORTHO05D008028 1.2e-60 236.9 149 72.5
BcaC07g42115 Brassica carinata HOM05D006500 ORTHO05D008028 1.6e-60 236.5 149 73.2
BcaC07g42118 Brassica carinata HOM05D006500 ORTHO05D008028 1.6e-60 236.5 149 73.2
A09p67320 Brassica napus HOM05D006500 ORTHO05D008028 1.6e-60 236.5 149 73.2
C08p51630 Brassica napus HOM05D006500 ORTHO05D008028 1.6e-60 236.5 149 73.2
BolC8t52691H Brassica oleracea HOM05D006500 ORTHO05D008028 1.6e-60 236.5 149 73.2
Ca_18638_v3 Cicer arietinum L. HOM05D006500 ORTHO05D008028 1.6e-60 236.5 135 80.7
HanXRQChr14g0433631 Helianthus annuus HOM05D003327 ORTHO05D004535 2.0e-60 236.1 140 79.3
BraA09t42063Z Brassica rapa HOM05D006500 ORTHO05D008028 2.7e-60 235.7 149 73.2
BcaC07g36846 Brassica carinata HOM05D006500 ORTHO05D008028 3.5e-60 235.3 156 69.2
EL10Ac3g06088 Beta vulgaris HOM05D006500 ORTHO05D008028 4.5e-60 235.0 151 72.8
Ciclev10022516m.g Citrus clementina HOM05D006500 ORTHO05D008028 4.5e-60 235.0 162 69.1
THA.LOC104800923 Tarenaya hassleriana HOM05D006500 ORTHO05D008028 4.5e-60 235.0 152 73.7
BcaB03g13492 Brassica carinata HOM05D006500 ORTHO05D008028 7.8e-60 234.2 151 70.9
Duzib151G0460 Durio zibethinus HOM05D006500 ORTHO05D008028 7.8e-60 234.2 133 78.9
Sc25g0002800 Simmondsia chinensis HOM05D006500 ORTHO05D008028 2.3e-59 232.6 153 69.9
Lsat_1_v5_gn_1_74920 Lactuca sativa HOM05D006500 ORTHO05D008028 1.9e-58 229.6 155 69.7
HPP92_003580 Vanilla planifolia HOM05D006500 ORTHO05D008028 1.9e-58 229.6 148 74.3
ECA248G2222 Erigeron canadensis HOM05D000003 ORTHO05D008028 3.3e-58 228.8 137 75.2
PSO675G9108 Papaver somniferum HOM05D006500 ORTHO05D008028 3.3e-58 228.8 147 72.8
Os01g0894500 Oryza sativa ssp. japonica HOM05D006500 ORTHO05D008028 1.2e-57 226.9 147 70.7
PSO732G0103 Papaver somniferum HOM05D006500 ORTHO05D008028 1.2e-57 226.9 147 72.1
ATR0743G133 Amborella trichopoda HOM05D006500 ORTHO05D008028 3.6e-57 225.3 149 71.8
CDE04G3295 Ceratophyllum demersum HOM05D006500 ORTHO05D008028 1.0e-56 223.8 134 76.1
Zm00001eb144900 Zea mays HOM05D006500 ORTHO05D008028 1.0e-56 223.8 134 73.9
FAN22G1805 Fragaria x ananassa HOM05D006500 ORTHO05D008028 2.3e-56 222.6 199 57.3
PGR083G1262 Punica granatum HOM05D006500 ORTHO05D008028 3.0e-56 222.2 154 71.4
FAN07G0402 Fragaria x ananassa HOM05D006500 ORTHO05D008028 8.9e-56 220.7 199 57.3
FAN12G1276 Fragaria x ananassa HOM05D006500 ORTHO05D008028 2.0e-55 219.5 204 55.9
unitig_46.g18636 Utricularia gibba HOM05D006500 ORTHO05D008028 2.2e-54 216.1 146 70.5
Aa31LG1G8630 Aethionema arabicum HOM05D006500 ORTHO05D008028 3.7e-54 215.3 170 61.8
Lj3A158T10 Lonicera japonica HOM05D006500 ORTHO05D008028 1.6e-52 209.9 135 73.3
SEGI_07767 Sequoiadendron giganteum HOM05D006500 ORTHO05D008028 2.5e-50 202.6 137 65.0
SMO119G0117 Selaginella moellendorffii HOM05D006500 ORTHO05D008028 1.7e-43 179.9 142 60.6
Haze_01362 Corylus avellana HOM05D006500 ORTHO05D008028 5.0e-43 178.3 153 62.1
Pp3c14_2450 Physcomitrium patens HOM05D006500 ORTHO05D008028 5.0e-43 178.3 163 53.4
MBI08_g33171_MAGBIO Magnolia biondii HOM05D006500 ORTHO05D008028 1.5e-42 176.8 102 80.4
BcaC07g42121 Brassica carinata HOM05D006500 ORTHO05D008028 4.3e-42 175.3 149 57.7
TPR.G23526 Trifolium pratense HOM05D006500 ORTHO05D008028 1.2e-41 173.7 97 82.5
Nn1g09666 Nelumbo nucifera HOM05D006500 ORTHO05D008028 3.1e-32 142.5 82 78.0
Ciclev10023175m.g Citrus clementina HOM05D006500 ORTHO05D008028 9.9e-23 110.9 71 71.8
SHI33478 Sapria himalayana HOM05D000105 ORTHO05D000023 2.2e-22 109.8 83 60.2
CAN.G701.5 Capsicum annuum HOM05D006500 ORTHO05D008028 6.0e-20 101.7 86 61.6
Cre01.g038950 Chlamydomonas reinhardtii HOM05D006500 ORTHO05D008028 1.4e-16 90.5 150 35.3
CBR_g27901 Chara braunii HOM05D006500 ORTHO05D008028 6.0e-12 75.1 107 36.4
MBI08_g33170_MAGBIO Magnolia biondii HOM05D006500 ORTHO05D008028 1.3e-06 57.4 31 80.6


User provided reference genes

Program Settings