Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc06g053330.4 Solanum lycopersicum HOM05D004436 ORTHO05D005179 0.0e+00 1186.8 620 100.0
Sopen06g018390 Solanum pennellii HOM05D004436 ORTHO05D005179 3.4e-235 818.5 433 97.7
PGSC0003DMG400016304 Solanum tuberosum HOM05D004436 ORTHO05D005179 1.6e-224 783.1 433 94.2
CAN.G540.4 Capsicum annuum HOM05D004436 ORTHO05D005179 7.7e-187 657.9 449 76.2
Nitab4.5_0000035g0090 Nicotiana tabacum HOM05D004436 ORTHO05D005179 1.1e-185 654.1 444 78.4
Nitab4.5_0012713g0010 Nicotiana tabacum HOM05D004436 ORTHO05D005179 3.7e-173 612.5 393 80.4
Peaxi162Scf00943g00014 Petunia axillaris HOM05D004436 ORTHO05D005179 2.0e-166 590.1 428 71.0
Peaxi162Scf00647g00219 Petunia axillaris HOM05D004436 ORTHO05D005179 9.1e-164 581.3 393 74.0
Dinv03512 Davidia involucrata HOM05D004436 ORTHO05D005179 6.4e-133 478.8 403 61.8
MSTRG.22562 Avicennia marina HOM05D004436 ORTHO05D005179 1.2e-131 474.6 440 58.0
Peaxi162Scf00060g02815 Petunia axillaris HOM05D004436 ORTHO05D005179 2.0e-131 473.8 433 58.7
Oeu044709.1 Olea europaea HOM05D004436 ORTHO05D005179 3.5e-131 473.0 397 58.7
Nitab4.5_0004287g0020 Nicotiana tabacum HOM05D004436 ORTHO05D005179 6.6e-130 468.8 393 64.9
Oeu047041.1 Olea europaea HOM05D004436 ORTHO05D005179 4.3e-129 466.1 384 59.9
Lj5A40G74 Lonicera japonica HOM05D004436 ORTHO05D005179 1.6e-128 464.2 393 59.0
Actinidia32167 Actinidia chinensis HOM05D004436 ORTHO05D005179 3.4e-126 456.4 456 54.8
Dinv30366 Davidia involucrata HOM05D004436 ORTHO05D005179 2.9e-125 453.4 355 65.6
vmacro22224 Vaccinium macrocarpon HOM05D004436 ORTHO05D005179 2.1e-123 447.2 396 59.1
CSS0015890 Camellia sinensis var. sinensis HOM05D004436 ORTHO05D005179 2.7e-123 446.8 396 59.1
GSVIVG01016817001 Vitis vinifera HOM05D004436 ORTHO05D005179 1.5e-121 441.0 394 59.9
CiPaw.01G221800 Carya illinoinensis HOM05D004436 ORTHO05D005179 2.5e-121 440.3 396 59.3
CiPaw.05G181900 Carya illinoinensis HOM05D004436 ORTHO05D005179 1.2e-120 438.0 396 59.1
Cc04_g01610 Coffea canephora HOM05D004436 ORTHO05D005179 5.2e-119 432.6 317 68.8
TAR375G0086 Trochodendron aralioides HOM05D004436 ORTHO05D005179 6.8e-119 432.2 416 55.5
Eucgr.F03167 Eucalyptus grandis HOM05D004436 ORTHO05D005179 9.9e-118 428.3 418 53.8
CSS0033207 Camellia sinensis var. sinensis HOM05D004436 ORTHO05D005179 2.2e-117 427.2 396 57.3
Rhsim08G0236100 Rhododendron simsii HOM05D004436 ORTHO05D005179 3.7e-117 426.4 432 53.7
Migut.D00948 Erythranthe guttata HOM05D004436 ORTHO05D005179 1.4e-116 424.5 444 51.4
Sc12g0010440 Simmondsia chinensis HOM05D004436 ORTHO05D005179 3.2e-116 423.3 394 55.1
SGA_v2.0_scaffold68G22895 Striga asiatica HOM05D004436 ORTHO05D005179 2.1e-115 420.6 396 56.6
Hma1.2p1_0496F.1_g166100 Hydrangea macrophylla HOM05D004436 ORTHO05D005179 1.9e-113 414.1 411 54.3
MELO3C024372.2 Cucumis melo HOM05D004436 ORTHO05D005179 5.6e-113 412.5 394 54.3
CsaV3_7G034640 Cucumis sativus L. HOM05D004436 ORTHO05D005179 1.2e-112 411.4 394 53.8
Thecc.03G227200 Theobroma cacao HOM05D004436 ORTHO05D005179 1.1e-111 408.3 450 50.7
PGR119G1065 Punica granatum HOM05D004436 ORTHO05D005179 1.8e-111 407.5 412 52.2
Cpa.g.sc25.86 Carica papaya HOM05D004436 ORTHO05D005179 4.0e-111 406.4 411 54.3
ClCG09G000840 Citrullus lanatus HOM05D004436 ORTHO05D005179 8.9e-111 405.2 397 53.1
Ciclev10025597m.g Citrus clementina HOM05D004436 ORTHO05D005179 7.6e-110 402.1 396 54.3
Sed0007780 Sechium edule HOM05D004436 ORTHO05D005179 1.1e-108 398.3 434 51.2
Lsat_1_v5_gn_5_135221 Lactuca sativa HOM05D004436 ORTHO05D005179 1.9e-108 397.5 430 51.2
Sed0020704 Sechium edule HOM05D004436 ORTHO05D005179 1.2e-107 394.8 391 52.4
DCAR_026403 Daucus carota HOM05D004436 ORTHO05D005179 1.0e-106 391.7 399 51.1
Manes.04G142200 Manihot esculenta HOM05D004436 ORTHO05D005179 6.6e-106 389.0 457 49.0
Haze_15997 Corylus avellana HOM05D004436 ORTHO05D005179 5.6e-105 386.0 434 49.5
Hund20819 Selenicereus undatus HOM05D004436 ORTHO05D005179 5.6e-105 386.0 421 49.6
Potri.001G198600 Populus trichocarpa HOM05D004436 ORTHO05D005179 7.3e-105 385.6 417 50.8
HanXRQChr10g0312341 Helianthus annuus HOM05D004436 ORTHO05D005179 3.6e-104 383.3 440 50.5
Prupe.3G044800 Prunus persica HOM05D004436 ORTHO05D005179 6.2e-104 382.5 428 48.1
COL.COLO4_30482 Corchorus olitorius HOM05D004436 ORTHO05D005179 1.1e-103 381.7 443 50.6
RcHm_v2.0_Chr2g0144531 Rosa chinensis HOM05D004436 ORTHO05D005179 2.4e-103 380.6 393 51.9
Duzib205G0267 Durio zibethinus HOM05D004436 ORTHO05D005179 3.1e-103 380.2 441 50.3
TWI23G0436 Tripterygium wilfordii HOM05D004436 ORTHO05D005179 1.5e-102 377.9 394 52.0
ECA234G4408 Erigeron canadensis HOM05D004436 ORTHO05D005179 2.0e-102 377.5 399 52.4
Manes.11G023100 Manihot esculenta HOM05D004436 ORTHO05D005179 3.4e-102 376.7 425 49.4
Lj6g0016044 Lotus japonicus HOM05D004436 ORTHO05D005179 4.9e-101 372.9 454 44.1
FAN09G2135 Fragaria x ananassa HOM05D004436 ORTHO05D005179 6.4e-101 372.5 392 50.5
Rhsim10G0150900 Rhododendron simsii HOM05D004436 ORTHO05D005179 8.4e-101 372.1 505 45.1
Aa31LG8G1130 Aethionema arabicum HOM05D004436 ORTHO05D005179 1.4e-100 371.3 404 52.0
Glyma.15G165300 Glycine max HOM05D004436 ORTHO05D005179 1.4e-100 371.3 388 50.8
Lalb_Chr08g0233321 Lupinus albus HOM05D004436 ORTHO05D005179 1.4e-100 371.3 421 47.7
CANSAT56G1493 Cannabis sativa HOM05D004436 ORTHO05D005179 3.2e-100 370.2 397 50.1
FAN02G3564 Fragaria x ananassa HOM05D004436 ORTHO05D005179 2.7e-99 367.1 391 49.9
FAN05G5343 Fragaria x ananassa HOM05D004436 ORTHO05D005179 4.6e-99 366.3 391 49.4
Gohir.A03G000500 Gossypium hirsutum HOM05D004436 ORTHO05D005179 4.6e-99 366.3 412 50.0
FvH4_6g34180 Fragaria vesca HOM05D004436 ORTHO05D005179 7.9e-99 365.5 391 50.1
Sabra01G0155800 Salix brachista HOM05D004436 ORTHO05D005179 1.3e-98 364.8 416 49.5
Gohir.D03G171700 Gossypium hirsutum HOM05D004436 ORTHO05D005179 3.0e-98 363.6 412 49.0
THA.LOC104804933 Tarenaya hassleriana HOM05D004436 ORTHO05D005179 3.9e-98 363.2 403 49.9
COL.COLO4_17027 Corchorus olitorius HOM05D004436 ORTHO05D005179 5.1e-98 362.8 352 56.0
Gorai.003G182300 Gossypium raimondii HOM05D004436 ORTHO05D005179 5.1e-98 362.8 412 49.0
Thhalv10020760m.g Eutrema salsugineum HOM05D004436 ORTHO05D005179 1.1e-97 361.7 403 49.1
FAN26G0630 Fragaria x ananassa HOM05D004436 ORTHO05D005179 1.9e-97 360.9 391 49.4
Atru.chr1.3808 Acer truncatum HOM05D004436 ORTHO05D005179 3.3e-97 360.1 401 49.9
Ah.07g197300 Amaranthus hybridus HOM05D004436 ORTHO05D005179 7.4e-97 359.0 406 47.3
EL10Ac7g16380 Beta vulgaris HOM05D004436 ORTHO05D005179 2.8e-96 357.1 439 46.0
Ca_02096_v3 Cicer arietinum L. HOM05D004436 ORTHO05D005179 3.6e-96 356.7 391 47.6
Sp3g12180 Schrenkiella parvula HOM05D004436 ORTHO05D005179 5.3e-95 352.8 442 45.0
MD09G1187900 Malus domestica HOM05D004436 ORTHO05D005179 6.9e-95 352.4 430 44.9
FAN14G2695 Fragaria x ananassa HOM05D004436 ORTHO05D005179 2.6e-94 350.5 430 46.7
Medtr7g104810 Medicago truncatula HOM05D004436 ORTHO05D005179 9.9e-94 348.6 399 45.9
EL10Ac7g16378 Beta vulgaris HOM05D004436 ORTHO05D005179 4.2e-92 343.2 409 46.2
Phvul.009G236700 Phaseolus vulgaris HOM05D004436 ORTHO05D005179 1.6e-91 341.3 393 48.1
unitig_26.g9010 Utricularia gibba HOM05D000572 ORTHO05D002399 2.3e-90 337.4 441 45.8
AL3G26120 Arabidopsis lyrata HOM05D004436 ORTHO05D005179 3.0e-90 337.0 444 43.9
RcHm_v2.0_Chr2g0166351 Rosa chinensis HOM05D004436 ORTHO05D005179 3.0e-90 337.0 392 46.7
CDE07G0038 Ceratophyllum demersum HOM05D004436 ORTHO05D005179 3.9e-90 336.7 411 47.2
Medtr2g037880 Medicago truncatula HOM05D004436 ORTHO05D005179 8.7e-90 335.5 390 44.9
Actinidia21779 Actinidia chinensis HOM05D004436 ORTHO05D005179 1.9e-89 334.3 439 47.6
AUR62009860 Chenopodium quinoa HOM05D004436 ORTHO05D005179 2.1e-88 330.9 413 43.6
Aqoxy2G00706 Aquilegia oxysepala HOM05D004436 ORTHO05D005179 1.1e-87 328.6 396 45.7
Carub.0003s1351 Capsella rubella HOM05D004436 ORTHO05D005179 4.0e-87 326.6 439 42.8
CARHR088750 Cardamine hirsuta HOM05D004436 ORTHO05D005179 6.9e-87 325.9 443 42.4
TPR.G13789 Trifolium pratense HOM05D004436 ORTHO05D005179 9.0e-87 325.5 395 45.6
arahy.Tifrunner.gnm1.ann1.4RDH3B Arachis hypogaea HOM05D004436 ORTHO05D005179 1.2e-86 325.1 394 44.9
AT3G13940 Arabidopsis thaliana HOM05D004436 ORTHO05D005179 2.0e-86 324.3 443 42.4
arahy.Tifrunner.gnm1.ann1.0TY6IG Arachis hypogaea HOM05D004436 ORTHO05D005179 2.0e-86 324.3 394 45.2
Psat1g144000 Pisum sativum HOM05D004436 ORTHO05D005179 3.4e-86 323.6 430 42.3
QL05p009436 Quercus lobata HOM05D004436 ORTHO05D005179 2.2e-85 320.9 601 34.6
FvH4_6g47280 Fragaria vesca HOM05D004436 ORTHO05D005179 3.2e-84 317.0 400 45.8
AUR62001510 Chenopodium quinoa HOM05D004436 ORTHO05D005179 1.6e-83 314.7 439 40.5
BcaC09g48383 Brassica carinata HOM05D004436 ORTHO05D005179 3.5e-83 313.5 393 44.8
C01p50660 Brassica napus HOM05D004436 ORTHO05D005179 3.5e-83 313.5 393 44.8
BolC1t05015H Brassica oleracea HOM05D004436 ORTHO05D005179 3.5e-83 313.5 393 44.8
PSO135G0558 Papaver somniferum HOM05D004436 ORTHO05D005179 3.5e-83 313.5 401 45.1
PSO724G1089 Papaver somniferum HOM05D004436 ORTHO05D005179 3.5e-83 313.5 401 45.4
A01p39710 Brassica napus HOM05D004436 ORTHO05D005179 6.0e-83 312.8 393 44.8
Medtr2g037460 Medicago truncatula HOM05D004436 ORTHO05D005179 6.0e-83 312.8 418 41.1
BraA01t04010Z Brassica rapa HOM05D004436 ORTHO05D005179 7.9e-83 312.4 393 44.8
BcaB04g20967 Brassica carinata HOM05D004436 ORTHO05D005179 2.1e-80 304.3 396 44.4
Nn6g35749 Nelumbo nucifera HOM05D004436 ORTHO05D005179 2.3e-74 284.3 393 43.3
ATR0762G049 Amborella trichopoda HOM05D004436 ORTHO05D005179 2.2e-72 277.7 420 41.2
MD17G1172300 Malus domestica HOM05D004436 ORTHO05D005179 5.5e-68 263.1 349 43.3
FAN24G2018 Fragaria x ananassa HOM05D004436 ORTHO05D005179 1.4e-66 258.5 388 42.5
HPP92_009424 Vanilla planifolia HOM05D004436 ORTHO05D005179 2.6e-65 254.2 427 39.1
Ah.08g216510 Amaranthus hybridus HOM05D004436 ORTHO05D005179 2.9e-61 240.7 309 45.0
Zm00001eb166800 Zea mays HOM05D004436 ORTHO05D005179 1.2e-59 235.3 394 39.8
FvH4_2g14600 Fragaria vesca HOM05D004436 ORTHO05D005179 1.1e-55 222.2 297 43.4
TPR.G16505 Trifolium pratense HOM05D004436 ORTHO05D005179 3.1e-55 220.7 218 48.6
Os11g0615100 Oryza sativa ssp. japonica HOM05D004436 ORTHO05D005179 7.7e-54 216.1 403 40.2
Lj6g0018808 Lotus japonicus HOM05D004436 ORTHO05D005179 1.7e-53 214.9 249 47.0
Ca_27339_v3 Cicer arietinum L. HOM05D004436 ORTHO05D005179 1.6e-51 208.4 283 42.0
Carub.0003s3547 Capsella rubella HOM05D004436 ORTHO05D005179 3.6e-51 207.2 347 37.2
AagrBONN_evm.TU.Sc2ySwM_368.2707 Anthoceros agrestis HOM05D004436 ORTHO05D005179 1.5e-49 201.8 447 33.6
Pp3c8_24340 Physcomitrium patens HOM05D004436 ORTHO05D005179 9.7e-49 199.1 435 34.0
PGSC0003DMG400002436 Solanum tuberosum HOM05D004436 ORTHO05D005179 2.4e-47 194.5 239 51.5
DCAR_023423 Daucus carota HOM05D004436 ORTHO05D005179 3.1e-47 194.1 236 45.3
THA.LOC104822769 Tarenaya hassleriana HOM05D004436 ORTHO05D005179 9.4e-44 182.6 242 45.9
SEGI_22335 Sequoiadendron giganteum HOM05D004436 ORTHO05D005179 3.1e-39 167.5 294 39.8
Aqoxy7G00272 Aquilegia oxysepala HOM05D004436 ORTHO05D005179 1.2e-38 165.6 236 39.0
SEGI_28110 Sequoiadendron giganteum HOM05D004436 ORTHO05D005179 3.5e-38 164.1 324 38.9
FAN27G1625 Fragaria x ananassa HOM05D004436 ORTHO05D005179 5.9e-38 163.3 375 33.1
FAN14G5104 Fragaria x ananassa HOM05D002326 ORTHO05D005179 1.1e-36 159.1 230 40.9
Oeu004353.1 Olea europaea HOM05D004436 ORTHO05D005179 2.5e-36 157.9 110 67.3
Aqoxy2G02914 Aquilegia oxysepala HOM05D004436 ORTHO05D005179 1.8e-31 141.7 136 53.7
Mapoly0063s0055 Marchantia polymorpha HOM05D004436 ORTHO05D005179 4.1e-31 140.6 332 32.5
CBR_g45967 Chara braunii HOM05D004436 ORTHO05D005179 1.5e-28 132.1 444 28.8
ATR0185G001 Amborella trichopoda HOM05D004436 ORTHO05D005179 3.3e-28 131.0 141 53.2
Dinv21190 Davidia involucrata HOM05D004436 ORTHO05D005179 3.6e-27 127.5 108 60.2
FAN20G3048 Fragaria x ananassa HOM05D004436 ORTHO05D005179 6.8e-26 123.2 174 42.5
THA.LOC104822775 Tarenaya hassleriana HOM05D004436 ORTHO05D005179 8.9e-26 122.9 153 47.7
FAN09G3702 Fragaria x ananassa HOM05D002326 ORTHO05D005179 1.5e-25 122.1 401 29.7
FAN02G4131 Fragaria x ananassa HOM05D002326 ORTHO05D005179 4.4e-25 120.6 402 29.6
Haze_06394 Corylus avellana HOM05D004436 ORTHO05D005179 7.5e-25 119.8 230 40.0
FAN15G1241 Fragaria x ananassa HOM05D004436 ORTHO05D005179 3.7e-24 117.5 394 27.4
AUR62000997 Chenopodium quinoa HOM05D004436 ORTHO05D005179 5.9e-22 110.2 142 41.5
Sopen02g033470 Solanum pennellii HOM05D001156 ORTHO05D001006 7.8e-22 109.8 112 57.1
Solyc02g088760.2 Solanum lycopersicum HOM05D001156 ORTHO05D001006 3.0e-21 107.8 112 56.2
AL1G64440 Arabidopsis lyrata HOM05D004436 ORTHO05D005179 1.5e-20 105.5 159 41.5
TPR.G16496 Trifolium pratense HOM05D004436 ORTHO05D005179 3.1e-18 97.8 179 33.0
PGSC0003DMG400001451 Solanum tuberosum HOM05D001156 ORTHO05D001006 1.5e-17 95.5 97 55.7
Peaxi162Scf01131g00007 Petunia axillaris HOM05D004436 ORTHO05D005179 3.4e-17 94.4 132 43.9
Aqoxy2G02915 Aquilegia oxysepala HOM05D004436 ORTHO05D005179 9.8e-17 92.8 119 40.3
SEGI_36774 Sequoiadendron giganteum HOM05D004436 ORTHO05D005179 7.8e-14 83.2 112 38.4
Oeu027301.1 Olea europaea HOM05D004436 ORTHO05D005179 1.0e-13 82.8 147 38.8
CAN.G206.220 Capsicum annuum HOM05D001156 ORTHO05D001006 5.0e-13 80.5 114 49.1
Nitab4.5_0000723g0100 Nicotiana tabacum HOM05D001156 ORTHO05D001006 3.3e-12 77.8 116 48.3
Nitab4.5_0004708g0040 Nicotiana tabacum HOM05D001156 ORTHO05D001006 3.3e-12 77.8 116 49.1
SMO144G0124 Selaginella moellendorffii HOM05D004436 ORTHO05D005179 3.1e-10 71.2 103 37.9
PSO017G0055 Papaver somniferum HOM05D004436 ORTHO05D005179 3.2e-07 61.2 125 38.4
Psat6g077080 Pisum sativum HOM05D001891 ORTHO05D005832 2.7e-06 58.2 123 31.7
Psat6g077120 Pisum sativum HOM05D001891 ORTHO05D005832 2.7e-06 58.2 123 31.7


User provided reference genes

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