Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc06g051820.4 Solanum lycopersicum HOM05D004948 ORTHO05D005824 7.5e-150 533.9 279 100.0
Sopen06g017830 Solanum pennellii HOM05D004948 ORTHO05D005824 5.0e-138 494.6 272 96.0
PGSC0003DMG400028892 Solanum tuberosum HOM05D004948 ORTHO05D005824 8.1e-112 407.5 228 94.7
Peaxi162Scf00618g00525 Petunia axillaris HOM05D004948 ORTHO05D005824 6.7e-90 334.7 232 78.9
PGSC0003DMG400009097 Solanum tuberosum HOM05D004948 ORTHO05D005824 1.5e-81 307.0 211 77.3
CAN.G204.5 Capsicum annuum HOM05D004948 ORTHO05D005824 9.7e-81 304.3 222 76.6
Solyc03g007480.3 Solanum lycopersicum HOM05D004948 ORTHO05D005824 9.7e-81 304.3 211 75.4
Sopen03g003430 Solanum pennellii HOM05D004948 ORTHO05D005824 9.7e-81 304.3 211 75.4
SGA_v2.0_scaffold10G05268 Striga asiatica HOM05D004948 ORTHO05D005824 1.3e-80 303.9 222 72.1
MSTRG.65 Avicennia marina HOM05D004948 ORTHO05D005824 6.3e-80 301.6 226 72.1
CAN.G108.18 Capsicum annuum HOM05D004948 ORTHO05D005824 8.2e-80 301.2 197 78.2
Migut.F01058 Erythranthe guttata HOM05D004948 ORTHO05D005824 1.3e-77 293.9 226 70.8
COL.COLO4_04803 Corchorus olitorius HOM05D004948 ORTHO05D005824 2.2e-77 293.1 223 68.2
Dinv28347 Davidia involucrata HOM05D004948 ORTHO05D005824 3.8e-77 292.4 223 70.4
Peaxi162Scf00904g00460 Petunia axillaris HOM05D004948 ORTHO05D005824 5.0e-77 292.0 189 78.3
Duzib068G0205 Durio zibethinus HOM05D004948 ORTHO05D005824 1.1e-76 290.8 198 73.7
Thecc.03G191700 Theobroma cacao HOM05D004948 ORTHO05D005824 1.4e-76 290.4 222 68.5
Hma1.2p1_0142F.1_g064080 Hydrangea macrophylla HOM05D004948 ORTHO05D005824 2.5e-76 289.7 230 69.6
Oeu037114.1 Olea europaea HOM05D004948 ORTHO05D005824 3.6e-75 285.8 213 72.3
PGR083G1298 Punica granatum HOM05D004948 ORTHO05D005824 4.6e-75 285.4 222 68.0
Duzib205G0398 Durio zibethinus HOM05D004948 ORTHO05D005824 7.9e-75 284.6 220 68.6
GSVIVG01028728001 Vitis vinifera HOM05D004948 ORTHO05D005824 3.0e-74 282.7 222 66.7
Cpa.g.sc3.41 Carica papaya HOM05D004948 ORTHO05D005824 3.9e-74 282.3 198 72.7
Actinidia34187 Actinidia chinensis HOM05D004948 ORTHO05D005824 5.1e-74 282.0 191 73.3
SalBow2G2244 Salvia bowleyana HOM05D004948 ORTHO05D005824 5.1e-74 282.0 223 68.2
Potri.012G033100 Populus trichocarpa HOM05D004948 ORTHO05D005824 6.7e-74 281.6 225 67.6
Dinv35301 Davidia involucrata HOM05D004948 ORTHO05D005824 8.8e-74 281.2 204 72.5
Gohir.A12G252400 Gossypium hirsutum HOM05D004948 ORTHO05D005824 8.8e-74 281.2 208 71.2
FAN01G0333 Fragaria x ananassa HOM05D004948 ORTHO05D005824 1.5e-73 280.4 194 73.2
Gorai.008G271400 Gossypium raimondii HOM05D004948 ORTHO05D005824 2.0e-73 280.0 208 70.2
CsaV3_5G000730 Cucumis sativus L. HOM05D004948 ORTHO05D005824 5.7e-73 278.5 200 69.5
Gohir.D12G253100 Gossypium hirsutum HOM05D004948 ORTHO05D005824 5.7e-73 278.5 208 70.2
Prupe.2G306200 Prunus persica HOM05D004948 ORTHO05D005824 5.7e-73 278.5 184 76.6
ClCG01G000640 Citrullus lanatus HOM05D004948 ORTHO05D005824 1.7e-72 276.9 222 63.5
vmacro06582 Vaccinium macrocarpon HOM05D004948 ORTHO05D005824 1.7e-72 276.9 231 66.7
FAN06G2108 Fragaria x ananassa HOM05D004948 ORTHO05D005824 2.2e-72 276.6 205 70.7
PGR042G1790 Punica granatum HOM05D004948 ORTHO05D005824 2.2e-72 276.6 191 74.9
CiPaw.06G006800 Carya illinoinensis HOM05D004948 ORTHO05D005824 4.8e-72 275.4 222 64.9
MELO3C005865.2 Cucumis melo HOM05D004948 ORTHO05D005824 4.8e-72 275.4 222 63.5
FAN10G0469 Fragaria x ananassa HOM05D004948 ORTHO05D005824 6.3e-72 275.0 205 70.2
FAN10G0476 Fragaria x ananassa HOM05D004948 ORTHO05D005824 6.3e-72 275.0 205 70.2
Sed0002242 Sechium edule HOM05D004948 ORTHO05D005824 6.3e-72 275.0 206 68.0
QL09p011186 Quercus lobata HOM05D004948 ORTHO05D005824 8.2e-72 274.6 222 66.7
FAN06G4897 Fragaria x ananassa HOM05D004948 ORTHO05D005824 1.1e-71 274.2 205 70.2
Eucgr.A02670 Eucalyptus grandis HOM05D004948 ORTHO05D005824 2.4e-71 273.1 200 72.0
TAR629G2953 Trochodendron aralioides HOM05D004948 ORTHO05D005824 5.3e-71 271.9 223 65.9
Lj1g0018821 Lotus japonicus HOM05D004948 ORTHO05D005824 6.9e-71 271.6 225 62.7
arahy.Tifrunner.gnm1.ann1.LZU7FF Arachis hypogaea HOM05D004948 ORTHO05D005824 1.2e-70 270.8 199 66.8
Ciclev10005800m.g Citrus clementina HOM05D004948 ORTHO05D005824 1.2e-70 270.8 224 65.2
FvH4_7g30910 Fragaria vesca HOM05D004948 ORTHO05D005824 2.0e-70 270.0 202 69.3
Rhsim03G0197700 Rhododendron simsii HOM05D004948 ORTHO05D005824 2.0e-70 270.0 224 67.4
Manes.06G156200 Manihot esculenta HOM05D004948 ORTHO05D005824 2.6e-70 269.6 222 64.4
Atru.chr1.284 Acer truncatum HOM05D004948 ORTHO05D005824 3.4e-70 269.2 224 64.7
MBI07_g20438_MAGBIO Magnolia biondii HOM05D004948 ORTHO05D005824 3.4e-70 269.2 225 63.6
RcHm_v2.0_Chr1g0379991 Rosa chinensis HOM05D004948 ORTHO05D005824 3.4e-70 269.2 171 78.9
MD01G1214200 Malus domestica HOM05D004948 ORTHO05D005824 1.0e-69 267.7 196 69.4
Potri.015G023400 Populus trichocarpa HOM05D004948 ORTHO05D005824 2.9e-69 266.2 222 66.7
DCAR_010636 Daucus carota HOM05D004948 ORTHO05D005824 6.5e-69 265.0 229 64.6
MD07G1283800 Malus domestica HOM05D004948 ORTHO05D005824 8.5e-69 264.6 222 64.4
TAR636G2931 Trochodendron aralioides HOM05D004948 ORTHO05D005824 8.5e-69 264.6 224 64.7
THA.LOC104800283 Tarenaya hassleriana HOM05D004948 ORTHO05D005824 4.2e-68 262.3 177 74.0
Aqoxy5G04108 Aquilegia oxysepala HOM05D004948 ORTHO05D005824 5.5e-68 261.9 224 63.8
Cfa016354 Carpinus fangiana HOM05D004948 ORTHO05D005824 2.7e-67 259.6 220 63.6
EL10Ac3g05356 Beta vulgaris HOM05D004948 ORTHO05D005824 6.1e-67 258.5 222 62.6
CANSAT21G0873 Cannabis sativa HOM05D004948 ORTHO05D005824 6.1e-67 258.5 222 61.3
Nitab4.5_0001331g0180 Nicotiana tabacum HOM05D004948 ORTHO05D005824 7.9e-67 258.1 184 75.0
ECA233G3864 Erigeron canadensis HOM05D004948 ORTHO05D005824 1.4e-66 257.3 198 68.7
Nitab4.5_0000472g0200 Nicotiana tabacum HOM05D004948 ORTHO05D005824 3.9e-66 255.8 184 74.5
Lsat_1_v5_gn_8_6120 Lactuca sativa HOM05D004948 ORTHO05D005824 2.0e-65 253.4 227 61.7
Aa31sc29G60 Aethionema arabicum HOM05D004948 ORTHO05D005824 4.4e-65 252.3 201 65.2
Aa31LG5G23580 Aethionema arabicum HOM05D004948 ORTHO05D005824 5.7e-65 251.9 177 71.2
AUR62021051 Chenopodium quinoa HOM05D004948 ORTHO05D005824 7.4e-65 251.5 186 66.7
AUR62031482 Chenopodium quinoa HOM05D004948 ORTHO05D005824 7.4e-65 251.5 186 66.1
Haze_00103 Corylus avellana HOM05D004948 ORTHO05D005824 1.7e-64 250.4 235 58.3
HanXRQChr13g0392981 Helianthus annuus HOM05D004948 ORTHO05D005824 2.8e-64 249.6 199 66.3
ATR1132G055 Amborella trichopoda HOM05D004948 ORTHO05D005824 4.8e-64 248.8 191 64.4
Duzib084G1367 Durio zibethinus HOM05D004948 ORTHO05D005824 8.2e-64 248.1 222 61.3
Sp6g15460 Schrenkiella parvula HOM05D004948 ORTHO05D005824 2.4e-63 246.5 170 71.2
FAN03G1348 Fragaria x ananassa HOM05D004948 ORTHO05D005824 3.1e-63 246.1 205 64.9
Carub.0008s1349 Capsella rubella HOM05D004948 ORTHO05D005824 4.1e-63 245.7 176 69.3
Sc19g0001090 Simmondsia chinensis HOM05D004948 ORTHO05D005824 4.1e-63 245.7 228 58.3
CARHR266350 Cardamine hirsuta HOM05D004948 ORTHO05D005824 5.3e-63 245.4 204 62.3
Thhalv10014692m.g Eutrema salsugineum HOM05D004948 ORTHO05D005824 5.3e-63 245.4 204 63.7
Glyma.13G040600 Glycine max HOM05D004948 ORTHO05D005824 5.3e-63 245.4 196 63.3
Sabra12G0022300 Salix brachista HOM05D004948 ORTHO05D005824 9.1e-63 244.6 196 68.4
AL8G28010 Arabidopsis lyrata HOM05D004948 ORTHO05D005824 2.0e-62 243.4 209 62.7
AT5G53310 Arabidopsis thaliana HOM05D004948 ORTHO05D005824 3.5e-62 242.7 206 62.1
BcaB05g22031 Brassica carinata HOM05D004948 ORTHO05D005824 4.5e-62 242.3 207 62.3
A02p11140 Brassica napus HOM05D004948 ORTHO05D005824 7.7e-62 241.5 199 63.8
BraA02t06177Z Brassica rapa HOM05D004948 ORTHO05D005824 7.7e-62 241.5 199 63.8
BcaC03g14431 Brassica carinata HOM05D004948 ORTHO05D005824 2.2e-61 240.0 199 63.8
C02p18470 Brassica napus HOM05D004948 ORTHO05D005824 2.2e-61 240.0 199 63.8
BolC2t07987H Brassica oleracea HOM05D004948 ORTHO05D005824 2.2e-61 240.0 199 63.8
Aa31LG3G9220 Aethionema arabicum HOM05D004948 ORTHO05D005824 2.9e-61 239.6 174 66.7
TWI23G0483 Tripterygium wilfordii HOM05D004948 ORTHO05D005824 3.8e-61 239.2 170 70.0
Lalb_Chr04g0263671 Lupinus albus HOM05D004948 ORTHO05D005824 8.5e-61 238.0 178 65.2
Manes.14G019200 Manihot esculenta HOM05D004948 ORTHO05D005824 3.2e-60 236.1 210 59.5
arahy.Tifrunner.gnm1.ann1.MD6354 Arachis hypogaea HOM05D004948 ORTHO05D005824 2.1e-59 233.4 170 67.6
Lj1g0003063 Lotus japonicus HOM05D004948 ORTHO05D005824 4.7e-59 232.3 155 74.8
Lj3A912T42 Lonicera japonica HOM05D004948 ORTHO05D005824 8.0e-59 231.5 196 65.8
Nn2g13651 Nelumbo nucifera HOM05D004948 ORTHO05D005824 1.4e-58 230.7 176 69.3
Hund27721 Selenicereus undatus HOM05D004948 ORTHO05D005824 2.3e-58 229.9 213 58.7
Hund27734 Selenicereus undatus HOM05D004948 ORTHO05D005824 2.3e-58 229.9 213 58.7
Actinidia31860 Actinidia chinensis HOM05D004948 ORTHO05D005824 2.6e-57 226.5 226 58.4
Ca_16670_v3 Cicer arietinum L. HOM05D004948 ORTHO05D005824 5.7e-57 225.3 216 58.8
Cc02_g01980 Coffea canephora HOM05D004948 ORTHO05D005824 1.1e-55 221.1 206 61.2
Gohir.D09G178100 Gossypium hirsutum HOM05D004948 ORTHO05D005824 1.1e-55 221.1 155 71.0
Gorai.006G200200 Gossypium raimondii HOM05D004948 ORTHO05D005824 1.1e-55 221.1 155 71.0
Psat0s97g0080 Pisum sativum HOM05D004948 ORTHO05D005824 1.1e-55 221.1 154 72.1
Nitab4.5_0002176g0030 Nicotiana tabacum HOM05D004948 ORTHO05D005824 1.4e-55 220.7 125 92.8
Os01g0621700 Oryza sativa ssp. japonica HOM05D004948 ORTHO05D005824 1.4e-55 220.7 174 61.5
DCAR_014528 Daucus carota HOM05D000121 ORTHO05D005824 2.4e-55 219.9 164 67.1
Glyma.04G238900 Glycine max HOM05D004948 ORTHO05D005824 2.4e-55 219.9 154 74.0
Gohir.A09G183400 Gossypium hirsutum HOM05D004948 ORTHO05D005824 2.7e-54 216.5 155 69.0
TPR.G33862 Trifolium pratense HOM05D004948 ORTHO05D005824 3.5e-54 216.1 154 68.8
HPP92_024433 Vanilla planifolia HOM05D004948 ORTHO05D005824 1.0e-53 214.5 156 65.4
DCAR_008996 Daucus carota HOM05D002473 ORTHO05D005824 1.1e-52 211.1 177 62.7
Glyma.06G124800 Glycine max HOM05D004948 ORTHO05D005824 3.2e-52 209.5 154 70.1
Medtr3g090670 Medicago truncatula HOM05D004948 ORTHO05D005824 6.1e-51 205.3 144 70.8
Phvul.009G135700 Phaseolus vulgaris HOM05D004948 ORTHO05D005824 1.8e-50 203.8 154 66.9
CDE04G0161 Ceratophyllum demersum HOM05D004948 ORTHO05D005824 2.3e-50 203.4 182 56.0
unitig_747.g21853 Utricularia gibba HOM05D004948 ORTHO05D005824 4.0e-50 202.6 156 67.3
Lalb_Chr08g0240671 Lupinus albus HOM05D004948 ORTHO05D005824 2.0e-49 200.3 155 66.5
arahy.Tifrunner.gnm1.ann1.NIM4HJ Arachis hypogaea HOM05D004948 ORTHO05D005824 2.8e-48 196.4 155 60.6
VMungo1309G3087 Vigna mungo HOM05D004948 ORTHO05D005824 2.8e-48 196.4 154 63.6
Zm00001eb432120 Zea mays HOM05D004948 ORTHO05D005824 5.4e-47 192.2 146 65.8
TWI39G0355 Tripterygium wilfordii HOM05D004948 ORTHO05D005824 7.7e-46 188.3 136 69.1
arahy.Tifrunner.gnm1.ann1.AMC2P5 Arachis hypogaea HOM05D004948 ORTHO05D005824 2.3e-45 186.8 170 55.9
Ah.07g206090 Amaranthus hybridus HOM05D004948 ORTHO05D005824 2.5e-44 183.3 136 66.9
Actinidia08617 Actinidia chinensis HOM05D004948 ORTHO05D005824 3.2e-44 183.0 143 68.5
SHI54648 Sapria himalayana HOM05D004948 ORTHO05D005824 2.1e-43 180.3 179 56.4
SHI54754 Sapria himalayana HOM05D004948 ORTHO05D005824 2.1e-43 180.3 179 56.4
CSS0002011 Camellia sinensis var. sinensis HOM05D004948 ORTHO05D005824 2.6e-41 173.3 117 73.5
Pp3c8_900 Physcomitrium patens HOM05D004948 ORTHO05D005824 2.6e-41 173.3 183 49.2
SMO361G0401 Selaginella moellendorffii HOM05D004948 ORTHO05D005824 3.4e-41 172.9 187 49.7
Mapoly0143s0028 Marchantia polymorpha HOM05D004948 ORTHO05D005824 7.5e-41 171.8 210 46.7
BolC9t57186H Brassica oleracea HOM05D004948 ORTHO05D005824 5.4e-39 165.6 175 52.0
BcaC04g20470 Brassica carinata HOM05D004948 ORTHO05D005824 1.6e-38 164.1 175 51.4
SEGI_09652 Sequoiadendron giganteum HOM05D004948 ORTHO05D005824 2.0e-38 163.7 136 60.3
CSS0025713 Camellia sinensis var. sinensis HOM05D004948 ORTHO05D005824 2.7e-38 163.3 106 76.4
CSS0008262 Camellia sinensis var. sinensis HOM05D004948 ORTHO05D005824 7.8e-38 161.8 106 75.5
C09p43150 Brassica napus HOM05D004948 ORTHO05D005824 2.9e-37 159.8 169 52.1
AagrBONN_evm.TU.Sc2ySwM_362.1882 Anthoceros agrestis HOM05D004948 ORTHO05D005824 5.0e-37 159.1 195 44.6
CBR_g39340 Chara braunii HOM05D004948 ORTHO05D005824 1.1e-31 141.4 154 47.4
Lj1P1012T60 Lonicera japonica HOM05D004948 ORTHO05D005824 7.0e-31 138.7 107 66.4
BcaB08g35692 Brassica carinata HOM05D004948 ORTHO05D005824 1.3e-24 117.9 87 65.5
Lalb_Chr23g0271431 Lupinus albus HOM05D004948 ORTHO05D005824 1.9e-20 104.0 155 43.2
MCO05G504 Micromonas commoda HOM05D004948 ORTHO05D005824 1.1e-18 98.2 192 33.9
CSS0011379 Camellia sinensis var. sinensis HOM05D004948 ORTHO05D005824 5.1e-13 79.3 105 50.5
CSS0022164 Camellia sinensis var. sinensis HOM05D004948 ORTHO05D005824 8.6e-13 78.6 105 50.5
CSS0007759 Camellia sinensis var. sinensis HOM05D004948 ORTHO05D005824 1.1e-10 71.6 87 47.1


User provided reference genes

Program Settings