Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc06g051770.1 Solanum lycopersicum HOM05D008174 ORTHO05D010206 3.3e-109 398.3 185 100.0
Sopen06g017730 Solanum pennellii HOM05D000014 ORTHO05D010206 1.8e-99 365.9 178 94.4
Sopen10g018310 Solanum pennellii HOM05D008174 ORTHO05D010206 3.4e-82 308.5 174 80.5
Solyc10g047720.1 Solanum lycopersicum HOM05D008174 ORTHO05D010206 3.9e-78 295.0 174 77.0
PGSC0003DMG400039877 Solanum tuberosum HOM05D008174 ORTHO05D010206 3.6e-76 288.5 174 75.3
Sopen05g028810 Solanum pennellii HOM05D008174 ORTHO05D010206 2.6e-74 282.3 170 74.1
CAN.G112.8 Capsicum annuum HOM05D008174 ORTHO05D010206 3.9e-70 268.5 173 71.1
PGSC0003DMG400021782 Solanum tuberosum HOM05D008174 ORTHO05D010206 1.3e-65 253.4 170 68.8
Solyc05g051120.1 Solanum lycopersicum HOM05D008174 ORTHO05D010206 1.7e-65 253.1 170 65.9
PGSC0003DMG400007047 Solanum tuberosum HOM05D008174 ORTHO05D010206 6.4e-65 251.1 173 65.9
PGSC0003DMG400007040 Solanum tuberosum HOM05D008174 ORTHO05D010206 6.0e-63 244.6 167 67.1
Sopen05g028850 Solanum pennellii HOM05D008174 ORTHO05D010206 7.9e-63 244.2 170 65.9
PGSC0003DMG400038058 Solanum tuberosum HOM05D008174 ORTHO05D010206 7.9e-63 244.2 170 67.1
PGSC0003DMG400047299 Solanum tuberosum HOM05D008174 ORTHO05D010206 1.1e-61 240.4 139 77.0
CAN.G1363.12 Capsicum annuum HOM05D008174 ORTHO05D010206 3.3e-61 238.8 169 65.7
Solyc05g051080.3 Solanum lycopersicum HOM05D008174 ORTHO05D010206 3.3e-61 238.8 174 63.8
PGSC0003DMG400044185 Solanum tuberosum HOM05D008174 ORTHO05D010206 3.3e-61 238.8 161 66.5
CAN.G998.16 Capsicum annuum HOM05D008174 ORTHO05D010206 7.4e-61 237.7 172 64.0
Solyc05g050640.1 Solanum lycopersicum HOM05D008174 ORTHO05D010206 1.6e-60 236.5 166 64.5
Nitab4.5_0000777g0110 Nicotiana tabacum HOM05D008174 ORTHO05D010206 3.1e-59 232.3 173 60.7
PGSC0003DMG400043955 Solanum tuberosum HOM05D008174 ORTHO05D010206 1.3e-57 226.9 151 67.5
Nitab4.5_0002222g0010 Nicotiana tabacum HOM05D008174 ORTHO05D010206 2.2e-57 226.1 162 61.7
Peaxi162Scf00424g00033 Petunia axillaris HOM05D008174 ORTHO05D010206 1.1e-53 213.8 170 56.5
Solyc05g051090.1 Solanum lycopersicum HOM05D008174 ORTHO05D010206 3.1e-51 205.7 123 74.0
PGSC0003DMG400041985 Solanum tuberosum HOM05D008174 ORTHO05D010206 3.1e-51 205.7 160 56.9
Nitab4.5_0004165g0040 Nicotiana tabacum HOM05D008174 ORTHO05D010206 3.2e-48 195.7 159 54.1
CAN.G1086.6 Capsicum annuum HOM05D008174 ORTHO05D010206 5.5e-48 194.9 161 54.0
Nitab4.5_0000647g0270 Nicotiana tabacum HOM05D008174 ORTHO05D010206 1.6e-47 193.4 159 53.5
Dinv44264 Davidia involucrata HOM05D008174 ORTHO05D010206 6.1e-47 191.4 166 52.4
Solyc05g051160.1 Solanum lycopersicum HOM05D008174 ORTHO05D010206 1.1e-45 187.2 125 66.4
Dinv15598 Davidia involucrata HOM05D008174 ORTHO05D010206 3.3e-45 185.7 161 49.7
PGSC0003DMG400034441 Solanum tuberosum HOM05D008174 ORTHO05D010206 3.7e-44 182.2 112 71.4
CAN.G305.63 Capsicum annuum HOM05D008174 ORTHO05D010206 2.9e-41 172.6 159 50.9
Peaxi162Scf00424g00035 Petunia axillaris HOM05D008174 ORTHO05D010206 8.5e-41 171.0 137 55.5
PGSC0003DMG400007005 Solanum tuberosum HOM05D008174 ORTHO05D010206 5.5e-40 168.3 129 59.7
Migut.J01515 Erythranthe guttata HOM05D008174 ORTHO05D010206 7.9e-39 164.5 168 44.0
Rhsim06G0163600 Rhododendron simsii HOM05D008174 ORTHO05D010206 9.7e-37 157.5 163 45.4
Hma1.2p1_0013F.1_g008300 Hydrangea macrophylla HOM05D008174 ORTHO05D010206 1.3e-36 157.1 169 45.0
PGSC0003DMG400043206 Solanum tuberosum HOM05D008174 ORTHO05D010206 1.4e-35 153.7 113 62.8
PGSC0003DMG400007003 Solanum tuberosum HOM05D008174 ORTHO05D010206 4.1e-35 152.1 116 60.3
Actinidia06986 Actinidia chinensis HOM05D000001 ORTHO05D000003 2.0e-34 149.8 164 46.3
SGA_v2.0_scaffold66G22408 Striga asiatica HOM05D008174 ORTHO05D010206 1.4e-32 143.7 165 43.0
Dinv39722 Davidia involucrata HOM05D008174 ORTHO05D010206 1.9e-32 143.3 150 43.3
Manes.11G074200 Manihot esculenta HOM05D008174 ORTHO05D010206 5.5e-32 141.7 160 40.0
Migut.C00177 Erythranthe guttata HOM05D008174 ORTHO05D010206 7.9e-31 137.9 170 40.0
SalBow6G6908 Salvia bowleyana HOM05D008174 ORTHO05D010206 2.3e-30 136.3 132 47.7
PGSC0003DMG400038972 Solanum tuberosum HOM05D018142 ORTHO05D010206 1.5e-29 133.7 146 49.3
Sopen05g028860 Solanum pennellii HOM05D000002 ORTHO05D000001 2.0e-29 133.3 151 47.7
Sopen05g029530 Solanum pennellii HOM05D008174 ORTHO05D010206 1.1e-27 127.5 207 36.2
PGSC0003DMG400039569 Solanum tuberosum HOM05D008174 ORTHO05D010206 1.4e-27 127.1 189 40.2
Solyc05g050660.1 Solanum lycopersicum HOM05D018142 ORTHO05D010206 5.9e-26 121.7 152 48.0
PGSC0003DMG400041587 Solanum tuberosum HOM05D018142 ORTHO05D010206 5.9e-26 121.7 164 40.2
SGA_v2.0_scaffold48G18023 Striga asiatica HOM05D008174 ORTHO05D010206 8.5e-25 117.9 168 38.7
PGSC0003DMG400038868 Solanum tuberosum HOM05D008174 ORTHO05D010206 2.5e-24 116.3 77 68.8
Sopen05g029070 Solanum pennellii HOM05D018142 ORTHO05D010206 4.2e-24 115.5 152 47.4
Ciclev10026971m.g Citrus clementina HOM05D008174 ORTHO05D010206 1.6e-23 113.6 145 37.2
PGSC0003DMG400042098 Solanum tuberosum HOM05D018142 ORTHO05D010206 4.7e-23 112.1 164 37.8
PGSC0003DMG400045106 Solanum tuberosum HOM05D018142 ORTHO05D010206 5.2e-22 108.6 157 38.2
TAR625G0216 Trochodendron aralioides HOM05D008174 ORTHO05D010206 3.7e-20 102.4 161 34.2
Ah.08g216590 Amaranthus hybridus HOM05D008174 ORTHO05D010206 3.8e-17 92.4 154 34.4
Solyc08g028980.1 Solanum lycopersicum HOM05D008174 ORTHO05D010206 4.2e-16 89.0 125 36.8
PGSC0003DMG400037637 Solanum tuberosum HOM05D008174 ORTHO05D010206 4.7e-15 85.5 79 53.2
Sopen08g009710 Solanum pennellii HOM05D000004 ORTHO05D000034 6.1e-15 85.1 123 36.6
Solyc03g044540.1 Solanum lycopersicum HOM05D008174 ORTHO05D010206 1.8e-14 83.6 115 33.0
Sc06g0009580 Simmondsia chinensis HOM05D002024 ORTHO05D007288 2.3e-14 83.2 116 37.1
Nn4g25547 Nelumbo nucifera HOM05D001713 ORTHO05D001669 8.8e-14 81.3 169 33.1
Peaxi162Scf00164g00103 Petunia axillaris HOM05D008174 ORTHO05D010206 1.5e-13 80.5 69 46.4
CAN.G945.6 Capsicum annuum HOM05D008174 ORTHO05D010206 6.3e-12 75.1 116 33.6
CSS0035206 Camellia sinensis var. sinensis HOM05D001713 ORTHO05D001669 1.1e-11 74.3 172 31.4
Aqoxy2G01010 Aquilegia oxysepala HOM05D001713 ORTHO05D001669 1.4e-11 73.9 166 32.5
Peaxi162Scf00095g00111 Petunia axillaris HOM05D008174 ORTHO05D010206 1.4e-11 73.9 55 56.4
Aqoxy4G02501 Aquilegia oxysepala HOM05D001713 ORTHO05D001669 2.4e-11 73.2 169 33.1
CSS0024620 Camellia sinensis var. sinensis HOM05D008174 ORTHO05D010206 2.4e-11 73.2 85 40.0
FAN10G2415 Fragaria x ananassa HOM05D008174 ORTHO05D010206 9.1e-11 71.2 158 29.1
Nitab4.5_0002222g0090 Nicotiana tabacum HOM05D008174 ORTHO05D010206 5.9e-10 68.6 94 38.3
Actinidia24475 Actinidia chinensis HOM05D008174 ORTHO05D010206 1.3e-09 67.4 125 34.4
QL02p074910 Quercus lobata HOM05D001713 ORTHO05D001669 1.7e-09 67.0 118 33.1
QL02p075024 Quercus lobata HOM05D001713 ORTHO05D001669 1.7e-09 67.0 118 33.1
Haze_08779 Corylus avellana HOM05D000141 ORTHO05D001860 1.1e-08 64.3 156 28.8
Duzib268G1296 Durio zibethinus HOM05D001713 ORTHO05D001669 1.5e-08 63.9 116 33.6
Gohir.D09G186450 Gossypium hirsutum HOM05D001713 ORTHO05D001669 2.5e-08 63.2 130 30.0
Gorai.006G209200 Gossypium raimondii HOM05D001713 ORTHO05D001669 2.5e-08 63.2 130 30.0
PSO210G6916 Papaver somniferum HOM05D001713 ORTHO05D001669 2.5e-08 63.2 167 28.1
Aqoxy5G03281 Aquilegia oxysepala HOM05D001713 ORTHO05D001669 5.5e-08 62.0 159 31.4
CiPaw.11G135200 Carya illinoinensis HOM05D001713 ORTHO05D001669 5.5e-08 62.0 119 30.3
Gorai.011G050500 Gossypium raimondii HOM05D001713 ORTHO05D001669 5.5e-08 62.0 127 31.5
QL08p058986 Quercus lobata HOM05D001713 ORTHO05D001669 5.5e-08 62.0 175 28.0
QL02p074896 Quercus lobata HOM05D001713 ORTHO05D001669 7.2e-08 61.6 116 31.0
QL02p075014 Quercus lobata HOM05D001713 ORTHO05D001669 7.2e-08 61.6 116 31.0
Aqoxy5G03283 Aquilegia oxysepala HOM05D001713 ORTHO05D001669 9.5e-08 61.2 159 30.8
FAN16G0125 Fragaria x ananassa HOM05D001713 ORTHO05D001669 9.5e-08 61.2 162 27.8
QL02p075052 Quercus lobata HOM05D001713 ORTHO05D001669 9.5e-08 61.2 116 34.5
Carub.0002s2549 Capsella rubella HOM05D001713 ORTHO05D001669 1.2e-07 60.8 117 32.5
COL.COLO4_10852 Corchorus olitorius HOM05D001713 ORTHO05D001669 1.2e-07 60.8 120 36.7
FAN06G2767 Fragaria x ananassa HOM05D008174 ORTHO05D010206 1.2e-07 60.8 103 34.0
Eucgr.L01801 Eucalyptus grandis HOM05D001713 ORTHO05D001669 2.1e-07 60.1 119 32.8
Cfa016920 Carpinus fangiana HOM05D001713 ORTHO05D001669 2.8e-07 59.7 117 31.6
Haze_03476 Corylus avellana HOM05D001713 ORTHO05D001669 2.8e-07 59.7 117 31.6
Nitab4.5_0009187g0030 Nicotiana tabacum HOM05D008174 ORTHO05D010206 2.8e-07 59.7 48 56.2
Cfa012233 Carpinus fangiana HOM05D001713 ORTHO05D001669 3.6e-07 59.3 118 33.1
THA.LOC104815134 Tarenaya hassleriana HOM05D001713 ORTHO05D001669 3.6e-07 59.3 119 32.8
COL.COLO4_24578 Corchorus olitorius HOM05D001713 ORTHO05D001669 4.7e-07 58.9 115 32.2
Aqoxy5G03280 Aquilegia oxysepala HOM05D001713 ORTHO05D001669 6.1e-07 58.5 159 30.8
Haze_08774 Corylus avellana HOM05D001713 ORTHO05D001669 6.1e-07 58.5 122 33.6
BcaC02g11447 Brassica carinata HOM05D001713 ORTHO05D001669 8.0e-07 58.2 117 30.8
Haze_08778 Corylus avellana HOM05D001713 ORTHO05D001669 8.0e-07 58.2 121 31.4
Gohir.A10G046150 Gossypium hirsutum HOM05D001713 ORTHO05D001669 8.0e-07 58.2 119 32.8
Hma1.2p1_2547F.1_g324190 Hydrangea macrophylla HOM05D001713 ORTHO05D001669 1.4e-06 57.4 120 30.8
Hma1.2p1_2547F.1_g324191 Hydrangea macrophylla HOM05D001713 ORTHO05D001669 1.4e-06 57.4 120 30.8
Hma1.2p1_2547F.1_g324193 Hydrangea macrophylla HOM05D001713 ORTHO05D001669 1.4e-06 57.4 120 30.8
THA.LOC109116201 Tarenaya hassleriana HOM05D001713 ORTHO05D001669 1.4e-06 57.4 119 31.1
Thecc.08G154200 Theobroma cacao HOM05D001713 ORTHO05D001669 1.4e-06 57.4 158 32.9
TWI34G0085 Tripterygium wilfordii HOM05D001713 ORTHO05D001669 1.4e-06 57.4 173 26.6
Actinidia09720 Actinidia chinensis HOM05D008174 ORTHO05D010206 1.8e-06 57.0 160 26.9
FvH4_3g37630 Fragaria vesca HOM05D001713 ORTHO05D001669 1.8e-06 57.0 158 25.3
PSO761G0588 Papaver somniferum HOM05D004833 ORTHO05D005671 1.8e-06 57.0 141 27.0
A05p11880 Brassica napus HOM05D001713 ORTHO05D001669 2.3e-06 56.6 129 27.1
Sp4g16060 Schrenkiella parvula HOM05D001713 ORTHO05D001669 3.0e-06 56.2 115 31.3
BolC4t23116H Brassica oleracea HOM05D001713 ORTHO05D001669 4.0e-06 55.8 117 29.9
Gohir.A09G192201 Gossypium hirsutum HOM05D001713 ORTHO05D001669 5.2e-06 55.5 130 30.0
AL5G19040 Arabidopsis lyrata HOM05D001713 ORTHO05D001669 6.8e-06 55.1 120 29.2
Cfa011927 Carpinus fangiana HOM05D001713 ORTHO05D001669 6.8e-06 55.1 118 31.4
Thecc.01G009200 Theobroma cacao HOM05D001713 ORTHO05D001669 6.8e-06 55.1 118 32.2
BraA05t20129Z Brassica rapa HOM05D001713 ORTHO05D001669 8.8e-06 54.7 117 28.2
Haze_09851 Corylus avellana HOM05D001713 ORTHO05D001669 8.8e-06 54.7 118 31.4


User provided reference genes

Program Settings