Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc06g051760.3 Solanum lycopersicum HOM05D004604 ORTHO05D005744 0.0e+00 1186.4 641 100.0
Sopen06g017720 Solanum pennellii HOM05D004604 ORTHO05D005744 0.0e+00 1168.7 641 95.9
PGSC0003DMG400023817 Solanum tuberosum HOM05D004604 ORTHO05D005744 0.0e+00 1100.5 643 91.0
CAN.G17.11 Capsicum annuum HOM05D004604 ORTHO05D005744 6.3e-285 983.8 641 84.1
Nitab4.5_0000802g0040 Nicotiana tabacum HOM05D004604 ORTHO05D005744 5.7e-270 934.1 638 79.2
Peaxi162Scf00825g00019 Petunia axillaris HOM05D004604 ORTHO05D005744 4.1e-268 927.9 646 78.0
Nitab4.5_0005174g0010 Nicotiana tabacum HOM05D004604 ORTHO05D005744 9.1e-268 926.8 644 78.7
CSS0014761 Camellia sinensis var. sinensis HOM05D004604 ORTHO05D005744 9.6e-201 704.1 641 60.2
Cc02_g06650 Coffea canephora HOM05D004604 ORTHO05D005744 1.8e-199 699.9 647 59.2
Lj1C953T18 Lonicera japonica HOM05D004604 ORTHO05D005744 2.5e-196 689.5 643 60.0
CSS0028164 Camellia sinensis var. sinensis HOM05D004604 ORTHO05D005744 1.1e-193 680.6 640 59.5
Rhsim03G0142100 Rhododendron simsii HOM05D004604 ORTHO05D005744 1.2e-187 660.6 622 58.2
TAR623G0226 Trochodendron aralioides HOM05D004604 ORTHO05D005744 2.2e-184 649.8 651 56.4
HanXRQChr14g0459851 Helianthus annuus HOM05D004604 ORTHO05D005744 1.1e-183 647.5 645 55.7
TWI09G1217 Tripterygium wilfordii HOM05D004604 ORTHO05D005744 1.5e-182 643.7 650 54.3
Ciclev10030943m.g Citrus clementina HOM05D004604 ORTHO05D005744 2.6e-182 642.9 645 55.3
Gohir.A10G235000 Gossypium hirsutum HOM05D004604 ORTHO05D005744 2.6e-182 642.9 646 55.1
ECA238G1235 Erigeron canadensis HOM05D004604 ORTHO05D005744 4.5e-182 642.1 651 55.5
Gorai.011G285800 Gossypium raimondii HOM05D004604 ORTHO05D005744 5.9e-182 641.7 646 55.1
Hma1.2p1_0446F.1_g154570 Hydrangea macrophylla HOM05D004604 ORTHO05D005744 1.7e-181 640.2 644 58.4
Dinv34395 Davidia involucrata HOM05D004604 ORTHO05D005744 2.2e-181 639.8 556 62.1
Manes.10G013900 Manihot esculenta HOM05D004604 ORTHO05D005744 6.5e-181 638.3 644 53.6
Cfa001330 Carpinus fangiana HOM05D004604 ORTHO05D005744 1.4e-180 637.1 637 56.8
Nn2g11459 Nelumbo nucifera HOM05D004604 ORTHO05D005744 1.4e-180 637.1 640 54.7
Peaxi162Scf01208g00144 Petunia axillaris HOM05D004604 ORTHO05D005744 7.2e-180 634.8 526 65.2
Thecc.10G020600 Theobroma cacao HOM05D004604 ORTHO05D005744 9.4e-180 634.4 644 55.1
SGA_v2.0_scaffold76G25082 Striga asiatica HOM05D004604 ORTHO05D005744 2.1e-179 633.3 651 56.5
TWI73G0703 Tripterygium wilfordii HOM05D004604 ORTHO05D005744 1.4e-178 630.6 676 51.3
Lj6g0016498 Lotus japonicus HOM05D004604 ORTHO05D005744 1.5e-177 627.1 643 53.0
Cpa.g.sc19.189 Carica papaya HOM05D004604 ORTHO05D005744 7.4e-177 624.8 638 54.1
arahy.Tifrunner.gnm1.ann1.E2DHW8 Arachis hypogaea HOM05D004604 ORTHO05D005744 9.7e-177 624.4 629 52.9
MD01G1132500 Malus domestica HOM05D004604 ORTHO05D005744 2.8e-176 622.9 640 52.7
Atru.chr12.19 Acer truncatum HOM05D004604 ORTHO05D005744 4.8e-176 622.1 643 54.4
Ca_15268_v3 Cicer arietinum L. HOM05D004604 ORTHO05D005744 4.8e-176 622.1 645 53.2
Hund13846 Selenicereus undatus HOM05D004604 ORTHO05D005744 6.3e-176 621.7 647 54.7
MD07G1220300 Malus domestica HOM05D004604 ORTHO05D005744 2.4e-175 619.8 638 52.8
CANSAT35G0855 Cannabis sativa HOM05D004604 ORTHO05D005744 5.3e-175 618.6 625 52.8
PSO384G4393 Papaver somniferum HOM05D004604 ORTHO05D005744 1.2e-174 617.5 650 53.7
Psat5g126400 Pisum sativum HOM05D004604 ORTHO05D005744 1.5e-174 617.1 640 53.1
Dinv17981 Davidia involucrata HOM05D004604 ORTHO05D005744 3.4e-174 615.9 493 66.1
Lsat_1_v5_gn_2_122780 Lactuca sativa HOM05D004604 ORTHO05D005744 3.4e-174 615.9 655 52.1
Sabra10G0146600 Salix brachista HOM05D004604 ORTHO05D005744 7.7e-174 614.8 646 54.3
Potri.010G190100 Populus trichocarpa HOM05D004604 ORTHO05D005744 2.2e-173 613.2 656 55.6
TPR.G2507 Trifolium pratense HOM05D004604 ORTHO05D005744 2.2e-173 613.2 640 52.0
Glyma.18G028600 Glycine max HOM05D004604 ORTHO05D005744 7.2e-172 608.2 640 52.7
Prupe.2G248700 Prunus persica HOM05D004604 ORTHO05D005744 2.1e-171 606.7 648 53.1
PGR044G2346 Punica granatum HOM05D004604 ORTHO05D005744 2.1e-171 606.7 630 52.2
Lalb_Chr15g0084181 Lupinus albus HOM05D004604 ORTHO05D005744 2.7e-171 606.3 630 52.2
Medtr3g070310 Medicago truncatula HOM05D004604 ORTHO05D005744 4.7e-171 605.5 639 52.0
CiPaw.02G191600 Carya illinoinensis HOM05D004604 ORTHO05D005744 1.0e-170 604.4 652 52.1
FAN10G0865 Fragaria x ananassa HOM05D004604 ORTHO05D005744 1.4e-170 604.0 650 52.2
Lalb_Chr18g0052631 Lupinus albus HOM05D004604 ORTHO05D005744 3.9e-170 602.4 637 52.4
PSO339G2357 Papaver somniferum HOM05D004604 ORTHO05D005744 1.5e-169 600.5 662 51.8
RcHm_v2.0_Chr1g0369991 Rosa chinensis HOM05D004604 ORTHO05D005744 1.5e-169 600.5 628 53.3
FvH4_7g24330 Fragaria vesca HOM05D004604 ORTHO05D005744 2.6e-169 599.7 646 52.3
Glyma.11G228500 Glycine max HOM05D004604 ORTHO05D005744 1.3e-168 597.4 646 51.9
HanXRQChr14g0459841 Helianthus annuus HOM05D004604 ORTHO05D005744 2.2e-168 596.7 642 52.6
Migut.F01373 Erythranthe guttata HOM05D004604 ORTHO05D005744 2.8e-168 596.3 651 51.0
Aqoxy4G02603 Aquilegia oxysepala HOM05D004604 ORTHO05D005744 4.8e-168 595.5 638 51.7
Phvul.001G241900 Phaseolus vulgaris HOM05D004604 ORTHO05D005744 6.3e-168 595.1 633 51.7
THA.LOC104816553 Tarenaya hassleriana HOM05D004604 ORTHO05D005744 1.4e-167 594.0 644 51.9
ClCG11G006230 Citrullus lanatus HOM05D004604 ORTHO05D005744 2.4e-167 593.2 640 51.6
Migut.F01374 Erythranthe guttata HOM05D004604 ORTHO05D005744 3.1e-167 592.8 622 51.0
Eucgr.J00226 Eucalyptus grandis HOM05D004604 ORTHO05D005744 5.3e-167 592.0 652 51.5
Duzib114G0112 Durio zibethinus HOM05D004604 ORTHO05D005744 2.9e-165 586.3 641 53.0
CsaV3_6G001760 Cucumis sativus L. HOM05D004604 ORTHO05D005744 4.7e-163 578.9 640 50.3
VMungo1383G0266 Vigna mungo HOM05D004604 ORTHO05D005744 1.0e-162 577.8 633 51.2
EL10Ac2g04814 Beta vulgaris HOM05D004604 ORTHO05D005744 1.8e-162 577.0 645 51.8
Ah.16g103410 Amaranthus hybridus HOM05D004604 ORTHO05D005744 3.3e-161 572.8 656 49.7
Sp6g37190 Schrenkiella parvula HOM05D004604 ORTHO05D005744 3.3e-161 572.8 643 51.5
FAN01G3126 Fragaria x ananassa HOM05D004604 ORTHO05D005744 7.5e-161 571.6 698 47.9
vmacro06977 Vaccinium macrocarpon HOM05D004604 ORTHO05D005744 1.4e-159 567.4 639 53.2
FAN06G3796 Fragaria x ananassa HOM05D004604 ORTHO05D005744 3.1e-159 566.2 613 52.7
Eucgr.J00228 Eucalyptus grandis HOM05D004604 ORTHO05D005744 9.1e-159 564.7 645 49.8
MSTRG.213 Avicennia marina HOM05D004604 ORTHO05D005744 2.0e-158 563.5 611 51.9
TAR369G0014 Trochodendron aralioides HOM05D004604 ORTHO05D005744 1.3e-157 560.8 557 56.9
Carub.0003s1055 Capsella rubella HOM05D004604 ORTHO05D005744 1.7e-157 560.5 645 49.8
MELO3C008290.2 Cucumis melo HOM05D004604 ORTHO05D005744 2.5e-156 556.6 637 49.5
AL6G15600 Arabidopsis lyrata HOM05D004604 ORTHO05D005744 9.4e-156 554.7 648 50.0
AT5G05700 Arabidopsis thaliana HOM05D004604 ORTHO05D005744 4.7e-155 552.4 656 49.5
MBI05_g34496_MAGBIO Magnolia biondii HOM05D004604 ORTHO05D005744 4.7e-155 552.4 570 55.3
Sp3g09520 Schrenkiella parvula HOM05D004604 ORTHO05D005744 8.0e-155 551.6 645 49.5
unitig_62.g23928 Utricularia gibba HOM05D004604 ORTHO05D005744 1.0e-154 551.2 648 47.5
Oeu048694.1 Olea europaea HOM05D004604 ORTHO05D005744 1.4e-154 550.8 498 58.0
A05p38060 Brassica napus HOM05D004604 ORTHO05D005744 2.6e-153 546.6 631 47.9
A10p30660 Brassica napus HOM05D004604 ORTHO05D005744 2.6e-153 546.6 646 48.0
BraA05t22598Z Brassica rapa HOM05D004604 ORTHO05D005744 2.6e-153 546.6 631 47.9
CARHR085800 Cardamine hirsuta HOM05D004604 ORTHO05D005744 3.4e-153 546.2 644 50.0
AL3G22760 Arabidopsis lyrata HOM05D004604 ORTHO05D005744 1.3e-152 544.3 641 51.3
BcaC05g29392 Brassica carinata HOM05D004604 ORTHO05D005744 1.3e-152 544.3 632 47.9
C05p56850 Brassica napus HOM05D004604 ORTHO05D005744 1.3e-152 544.3 632 47.9
C09p71140 Brassica napus HOM05D004604 ORTHO05D005744 2.2e-152 543.5 648 48.0
GSVIVG01032843001 Vitis vinifera HOM05D004604 ORTHO05D005744 2.2e-152 543.5 648 49.5
BolC5t34349H Brassica oleracea HOM05D004604 ORTHO05D005744 3.7e-152 542.7 632 47.8
BcaB06g25636 Brassica carinata HOM05D004604 ORTHO05D005744 4.8e-152 542.3 636 48.6
BolC9t59876H Brassica oleracea HOM05D004604 ORTHO05D005744 5.4e-151 538.9 648 47.7
Eucgr.J00230 Eucalyptus grandis HOM05D004604 ORTHO05D005744 5.4e-151 538.9 641 47.7
ATR0618G256 Amborella trichopoda HOM05D004604 ORTHO05D005744 5.0e-149 532.3 653 49.0
Aa31LG11G6730 Aethionema arabicum HOM05D004604 ORTHO05D005744 2.5e-148 530.0 628 48.9
Hund15948 Selenicereus undatus HOM05D004604 ORTHO05D005744 2.5e-148 530.0 641 48.2
arahy.Tifrunner.gnm1.ann1.C37ZT5 Arachis hypogaea HOM05D004604 ORTHO05D005744 3.3e-148 529.6 573 50.6
Os05g0446800 Oryza sativa ssp. japonica HOM05D004604 ORTHO05D005744 9.5e-148 528.1 646 49.2
DCAR_028567 Daucus carota HOM05D004604 ORTHO05D005744 2.8e-147 526.6 588 51.5
BraA10t45107Z Brassica rapa HOM05D004604 ORTHO05D005744 1.0e-146 524.6 684 45.5
CARHR207580 Cardamine hirsuta HOM05D004604 ORTHO05D005744 8.9e-146 521.5 605 49.9
AUR62022867 Chenopodium quinoa HOM05D004604 ORTHO05D005744 8.9e-146 521.5 602 50.7
Haze_17213 Corylus avellana HOM05D004604 ORTHO05D005744 5.7e-145 518.8 617 49.8
Eucgr.J00232 Eucalyptus grandis HOM05D004604 ORTHO05D005744 9.8e-145 518.1 564 50.5
Haze_17214 Corylus avellana HOM05D004604 ORTHO05D005744 1.7e-144 517.3 653 47.9
BcaC06g32278 Brassica carinata HOM05D004604 ORTHO05D005744 1.8e-143 513.8 644 47.0
Cpa.g.sc19.187 Carica papaya HOM05D004604 ORTHO05D005744 4.1e-143 512.7 528 53.0
Potri.008G067000 Populus trichocarpa HOM05D004604 ORTHO05D005744 1.7e-141 507.3 559 51.3
Sabra08G0049200 Salix brachista HOM05D004604 ORTHO05D005744 2.9e-141 506.5 592 49.7
Aa31LG3G4550 Aethionema arabicum HOM05D004604 ORTHO05D005744 1.6e-139 500.7 677 45.1
FAN03G0827 Fragaria x ananassa HOM05D004604 ORTHO05D005744 2.1e-139 500.4 717 43.7
Sed0013753 Sechium edule HOM05D004604 ORTHO05D005744 4.0e-138 496.1 495 53.1
Zm00001eb348230 Zea mays HOM05D004604 ORTHO05D005744 5.2e-138 495.7 535 52.3
Cpa.g.sc19.188 Carica papaya HOM05D004604 ORTHO05D005744 8.3e-136 488.4 499 55.7
Carub.0006s0459 Capsella rubella HOM05D004604 ORTHO05D005744 8.6e-133 478.4 582 47.8
CDE03G0502 Ceratophyllum demersum HOM05D004604 ORTHO05D005744 4.3e-132 476.1 516 50.8
Actinidia29693 Actinidia chinensis HOM05D004604 ORTHO05D005744 8.9e-130 468.4 639 44.6
Gohir.D10G247400 Gossypium hirsutum HOM05D004604 ORTHO05D005744 1.2e-129 468.0 525 51.0
SEGI_40640 Sequoiadendron giganteum HOM05D004604 ORTHO05D005744 4.6e-126 456.1 632 43.4
Sc11g0007180 Simmondsia chinensis HOM05D004604 ORTHO05D005744 7.8e-126 455.3 533 49.0
HanXRQChr06g0172261 Helianthus annuus HOM05D004604 ORTHO05D005744 1.1e-116 424.9 490 50.0
Eucgr.J00227 Eucalyptus grandis HOM05D004604 ORTHO05D005744 1.1e-111 408.3 421 53.0
SEGI_28443 Sequoiadendron giganteum HOM05D004604 ORTHO05D005744 2.6e-105 387.1 463 47.3
SEGI_33236 Sequoiadendron giganteum HOM05D004604 ORTHO05D005744 2.6e-105 387.1 463 47.3
Mapoly0067s0057 Marchantia polymorpha HOM05D004604 ORTHO05D005744 4.9e-104 382.9 626 39.0
AagrBONN_evm.TU.Sc2ySwM_117.2751 Anthoceros agrestis HOM05D004604 ORTHO05D005744 6.0e-102 375.9 513 42.7
AUR62012235 Chenopodium quinoa HOM05D004604 ORTHO05D005744 7.8e-102 375.6 513 44.1
Pp3c3_24950 Physcomitrium patens HOM05D004604 ORTHO05D005744 1.0e-101 375.2 594 38.7
AT3G11240 Arabidopsis thaliana HOM05D004604 ORTHO05D005744 1.7e-101 374.4 472 48.9
Actinidia33931 Actinidia chinensis HOM05D004604 ORTHO05D005744 8.7e-101 372.1 644 41.3
SMO118G0549 Selaginella moellendorffii HOM05D004604 ORTHO05D005744 4.2e-95 353.2 497 42.7
Thhalv10013820m.g Eutrema salsugineum HOM05D004604 ORTHO05D005744 4.6e-94 349.7 381 53.3
COL.COLO4_25696 Corchorus olitorius HOM05D004604 ORTHO05D005744 4.5e-89 333.2 640 38.1
PRCOL_00002395 Prasinoderma coloniale HOM05D004604 ORTHO05D005744 2.8e-75 287.3 550 38.5
CBR_g49483 Chara braunii HOM05D004604 ORTHO05D005744 4.4e-60 236.9 517 33.8
HPP92_018034 Vanilla planifolia HOM05D004604 ORTHO05D005744 9.7e-60 235.7 288 51.0
arahy.Tifrunner.gnm1.ann1.3RRJ97 Arachis hypogaea HOM05D004604 ORTHO05D005744 7.2e-47 193.0 356 37.1
PSO339G5386 Papaver somniferum HOM05D004604 ORTHO05D005744 1.1e-42 179.1 134 67.9
MCO15G553 Micromonas commoda HOM05D004604 ORTHO05D005744 5.3e-42 176.8 167 52.7
Cre13.g580600 Chlamydomonas reinhardtii HOM05D004604 ORTHO05D005744 1.1e-39 169.1 195 44.6
Peaxi162Scf01208g00156 Petunia axillaris HOM05D004604 ORTHO05D005744 2.0e-25 121.7 71 80.3
HPP92_018033 Vanilla planifolia HOM05D004604 ORTHO05D005744 2.0e-20 105.1 166 41.6
Cfa022588 Carpinus fangiana HOM05D004604 ORTHO05D005744 1.1e-18 99.4 240 29.6
Oeu025172.2 Olea europaea HOM05D004604 ORTHO05D005744 2.9e-11 74.7 127 40.2
CBR_g49485 Chara braunii HOM05D000019 ORTHO05D000048 3.9e-08 64.3 45 64.4


User provided reference genes

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