Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc06g051410.4 Solanum lycopersicum HOM05D005616 ORTHO05D006975 6.1e-152 540.8 276 100.0
Sopen06g017380 Solanum pennellii HOM05D005616 ORTHO05D006975 7.7e-147 523.9 270 98.9
PGSC0003DMG401008474 Solanum tuberosum HOM05D005616 ORTHO05D006975 2.2e-141 505.8 270 95.9
PGSC0003DMG400010237 Solanum tuberosum HOM05D005616 ORTHO05D006975 4.8e-133 478.0 276 88.4
Solyc02g076760.3 Solanum lycopersicum HOM05D005616 ORTHO05D006975 3.2e-129 465.3 270 87.0
Sopen02g021670 Solanum pennellii HOM05D005616 ORTHO05D006975 9.4e-129 463.8 270 86.7
Peaxi162Scf00284g01041 Petunia axillaris HOM05D005616 ORTHO05D006975 9.8e-126 453.8 276 83.3
Peaxi162Scf00801g00729 Petunia axillaris HOM05D005616 ORTHO05D006975 8.3e-125 450.7 273 82.8
Nitab4.5_0005018g0020 Nicotiana tabacum HOM05D005616 ORTHO05D006975 5.5e-121 438.0 254 86.6
Nitab4.5_0003454g0010 Nicotiana tabacum HOM05D005616 ORTHO05D006975 2.0e-118 429.5 252 85.3
Haze_17234 Corylus avellana HOM05D005616 ORTHO05D006975 6.4e-101 371.3 275 68.7
CSS0029859 Camellia sinensis var. sinensis HOM05D005616 ORTHO05D006975 6.0e-99 364.8 275 67.6
Lj8A66T51 Lonicera japonica HOM05D005616 ORTHO05D006975 8.6e-98 360.9 276 68.1
Dinv10614 Davidia involucrata HOM05D005616 ORTHO05D006975 1.1e-97 360.5 275 65.8
Cc02_g06410 Coffea canephora HOM05D005616 ORTHO05D006975 6.2e-96 354.8 275 66.5
MSTRG.8961 Avicennia marina HOM05D005616 ORTHO05D006975 1.8e-95 353.2 274 65.7
GSVIVG01032805001 Vitis vinifera HOM05D005616 ORTHO05D006975 2.3e-95 352.8 276 65.6
FAN07G0068 Fragaria x ananassa HOM05D005616 ORTHO05D006975 2.6e-94 349.4 275 66.2
Manes.10G011400 Manihot esculenta HOM05D005616 ORTHO05D006975 1.3e-93 347.1 274 65.7
Nitab4.5_0010803g0020 Nicotiana tabacum HOM05D005616 ORTHO05D006975 2.2e-93 346.3 206 85.0
Gohir.A04G093400 Gossypium hirsutum HOM05D005616 ORTHO05D006975 3.7e-93 345.5 274 65.3
TWI09G1208 Tripterygium wilfordii HOM05D005616 ORTHO05D006975 6.4e-93 344.7 238 70.2
Ciclev10032361m.g Citrus clementina HOM05D005616 ORTHO05D006975 1.4e-92 343.6 273 64.5
Eucgr.J00201 Eucalyptus grandis HOM05D005616 ORTHO05D006975 1.9e-92 343.2 271 66.8
FvH4_4g21980 Fragaria vesca HOM05D005616 ORTHO05D006975 4.1e-92 342.0 275 64.7
Migut.F00691 Erythranthe guttata HOM05D005616 ORTHO05D006975 7.1e-92 341.3 275 64.4
Gorai.012G116600 Gossypium raimondii HOM05D005616 ORTHO05D006975 9.2e-92 340.9 273 63.7
vmacro06962 Vaccinium macrocarpon HOM05D005616 ORTHO05D006975 9.2e-92 340.9 276 64.9
FAN03G0254 Fragaria x ananassa HOM05D005616 ORTHO05D006975 2.1e-91 339.7 275 64.0
Thecc.10G015200 Theobroma cacao HOM05D005616 ORTHO05D006975 2.7e-91 339.3 274 62.8
Duzib128G0549 Durio zibethinus HOM05D005616 ORTHO05D006975 7.8e-91 337.8 273 62.3
Prupe.2G251100 Prunus persica HOM05D005616 ORTHO05D006975 1.3e-90 337.0 275 61.8
TAR623G1070 Trochodendron aralioides HOM05D005616 ORTHO05D006975 1.3e-90 337.0 252 70.2
Cfa001309 Carpinus fangiana HOM05D005616 ORTHO05D006975 1.7e-90 336.7 205 80.0
HanXRQChr08g0222401 Helianthus annuus HOM05D005616 ORTHO05D006975 1.7e-90 336.7 277 63.5
Lj1g0010131 Lotus japonicus HOM05D005616 ORTHO05D006975 1.7e-90 336.7 274 64.2
FAN01G0309 Fragaria x ananassa HOM05D001932 ORTHO05D006975 2.3e-90 336.3 268 64.2
FvH4_7g24571 Fragaria vesca HOM05D005616 ORTHO05D006975 3.0e-90 335.9 275 64.7
FAN06G2993 Fragaria x ananassa HOM05D001932 ORTHO05D006975 5.1e-90 335.1 268 65.7
Lj6g0010776 Lotus japonicus HOM05D005616 ORTHO05D006975 5.1e-90 335.1 240 70.0
PGR044G0338 Punica granatum HOM05D005616 ORTHO05D006975 5.1e-90 335.1 205 80.5
SGA_v2.0_scaffold60G21012 Striga asiatica HOM05D005616 ORTHO05D006975 5.1e-90 335.1 269 63.2
CANSAT78G1638 Cannabis sativa HOM05D005616 ORTHO05D006975 1.5e-89 333.6 231 71.9
Medtr3g070890 Medicago truncatula HOM05D005616 ORTHO05D006975 2.5e-89 332.8 240 69.2
RcHm_v2.0_Chr1g0370411 Rosa chinensis HOM05D005616 ORTHO05D006975 2.5e-89 332.8 276 64.1
FAN10G3671 Fragaria x ananassa HOM05D005616 ORTHO05D006975 3.3e-89 332.4 245 69.4
MD07G1223000 Malus domestica HOM05D005616 ORTHO05D006975 3.3e-89 332.4 275 62.5
Phvul.001G244100 Phaseolus vulgaris HOM05D005616 ORTHO05D006975 3.3e-89 332.4 278 62.9
DCAR_023439 Daucus carota HOM05D005616 ORTHO05D006975 5.6e-89 331.6 223 74.0
Lalb_Chr08g0231681 Lupinus albus HOM05D005616 ORTHO05D006975 5.6e-89 331.6 274 63.1
SGA_v2.0_scaffold105G30487 Striga asiatica HOM05D005616 ORTHO05D006975 7.3e-89 331.3 264 64.0
CSS0002000 Camellia sinensis var. sinensis HOM05D005616 ORTHO05D006975 9.5e-89 330.9 205 77.1
Medtr3g449480 Medicago truncatula HOM05D005616 ORTHO05D006975 9.5e-89 330.9 240 68.8
PSO384G3782 Papaver somniferum HOM05D005616 ORTHO05D006975 2.1e-88 329.7 207 77.8
Psat5g129880 Pisum sativum HOM05D005616 ORTHO05D006975 2.8e-88 329.3 277 62.5
PSO339G0515 Papaver somniferum HOM05D005616 ORTHO05D006975 3.6e-88 328.9 207 77.8
arahy.Tifrunner.gnm1.ann1.R92L2M Arachis hypogaea HOM05D005616 ORTHO05D006975 8.1e-88 327.8 206 77.7
VMungo1383G1171 Vigna mungo HOM05D005616 ORTHO05D006975 8.1e-88 327.8 210 76.7
FAN12G0831 Fragaria x ananassa HOM05D005616 ORTHO05D006975 1.1e-87 327.4 245 69.0
EL10Ac1g02124 Beta vulgaris HOM05D005616 ORTHO05D006975 1.4e-87 327.0 226 73.0
Ca_15132_v3 Cicer arietinum L. HOM05D005616 ORTHO05D006975 1.4e-87 327.0 209 76.1
Oeu004695.1 Olea europaea HOM05D005616 ORTHO05D006975 1.4e-87 327.0 232 70.3
Lsat_1_v5_gn_8_11701 Lactuca sativa HOM05D005616 ORTHO05D006975 1.8e-87 326.6 256 66.8
arahy.Tifrunner.gnm1.ann1.061K9L Arachis hypogaea HOM05D005616 ORTHO05D006975 2.4e-87 326.2 205 77.6
PSO017G0320 Papaver somniferum HOM05D005616 ORTHO05D006975 2.4e-87 326.2 207 75.8
SalBow6G5046 Salvia bowleyana HOM05D005616 ORTHO05D006975 3.1e-87 325.9 229 72.1
TPR.G11210 Trifolium pratense HOM05D005616 ORTHO05D006975 4.0e-87 325.5 228 71.5
ECA233G4091 Erigeron canadensis HOM05D005616 ORTHO05D006975 5.2e-87 325.1 276 61.6
Gohir.A10G237500 Gossypium hirsutum HOM05D005616 ORTHO05D006975 6.8e-87 324.7 266 63.9
Glyma.11G230900 Glycine max HOM05D005616 ORTHO05D006975 8.9e-87 324.3 274 61.7
Glyma.18G026400 Glycine max HOM05D005616 ORTHO05D006975 8.9e-87 324.3 266 62.4
Aa31LG11G6640 Aethionema arabicum HOM05D005616 ORTHO05D006975 1.2e-86 323.9 266 61.3
CAN.G370.83 Capsicum annuum HOM05D002257 ORTHO05D006975 1.2e-86 323.9 196 86.2
AUR62012260 Chenopodium quinoa HOM05D005616 ORTHO05D006975 1.2e-86 323.9 251 67.3
AUR62022893 Chenopodium quinoa HOM05D005616 ORTHO05D006975 2.6e-86 322.8 211 74.9
Thhalv10014368m.g Eutrema salsugineum HOM05D005616 ORTHO05D006975 2.6e-86 322.8 243 65.8
Sp6g37270 Schrenkiella parvula HOM05D005616 ORTHO05D006975 2.6e-86 322.8 243 65.8
CiPaw.02G193000 Carya illinoinensis HOM05D005616 ORTHO05D006975 4.4e-86 322.0 255 63.5
PSO675G8834 Papaver somniferum HOM05D005616 ORTHO05D006975 9.9e-86 320.9 267 63.3
MELO3C026789.2 Cucumis melo HOM05D005616 ORTHO05D006975 1.3e-85 320.5 231 69.7
Aqoxy4G02536 Aquilegia oxysepala HOM05D005616 ORTHO05D006975 1.7e-85 320.1 207 74.9
THA.LOC104816542 Tarenaya hassleriana HOM05D005616 ORTHO05D006975 3.8e-85 318.9 248 62.9
CSS0019139 Camellia sinensis var. sinensis HOM05D005616 ORTHO05D006975 8.4e-85 317.8 205 74.6
CARHR034480 Cardamine hirsuta HOM05D005616 ORTHO05D006975 1.4e-84 317.0 240 65.8
ClCG07G004280 Citrullus lanatus HOM05D005616 ORTHO05D006975 1.4e-84 317.0 232 68.1
Sabra08G0051100 Salix brachista HOM05D005616 ORTHO05D006975 1.4e-84 317.0 276 62.0
MBI19_g36756_MAGBIO Magnolia biondii HOM05D005616 ORTHO05D006975 1.9e-84 316.6 214 73.4
Sed0025730 Sechium edule HOM05D005616 ORTHO05D006975 1.9e-84 316.6 275 58.2
Sc10g0002410 Simmondsia chinensis HOM05D005616 ORTHO05D006975 2.4e-84 316.2 275 60.4
AT1G07780 Arabidopsis thaliana HOM05D005616 ORTHO05D006975 4.1e-84 315.5 245 62.9
BcaB05g21694 Brassica carinata HOM05D005616 ORTHO05D006975 4.1e-84 315.5 232 69.0
Potri.012G145600 Populus trichocarpa HOM05D005616 ORTHO05D006975 4.1e-84 315.5 207 76.3
AL6G15480 Arabidopsis lyrata HOM05D005616 ORTHO05D006975 5.4e-84 315.1 234 66.7
AT5G05590 Arabidopsis thaliana HOM05D005616 ORTHO05D006975 5.4e-84 315.1 245 62.9
Potri.008G069500 Populus trichocarpa HOM05D005616 ORTHO05D006975 5.4e-84 315.1 274 62.0
Carub.0006s0449 Capsella rubella HOM05D005616 ORTHO05D006975 1.6e-83 313.5 234 67.1
BolC2t06207H Brassica oleracea HOM05D005616 ORTHO05D006975 2.1e-83 313.2 232 68.1
CsaV3_5G010220 Cucumis sativus L. HOM05D005616 ORTHO05D006975 3.5e-83 312.4 228 67.5
Hund13869 Selenicereus undatus HOM05D005616 ORTHO05D006975 4.6e-83 312.0 261 61.7
BraA02t04856Z Brassica rapa HOM05D005616 ORTHO05D006975 1.0e-82 310.8 232 67.7
BcaB05g21698 Brassica carinata HOM05D005616 ORTHO05D006975 1.7e-82 310.1 233 67.8
Gohir.D10G249200 Gossypium hirsutum HOM05D005616 ORTHO05D006975 2.8e-80 302.8 273 60.4
Gorai.011G289500 Gossypium raimondii HOM05D005616 ORTHO05D006975 8.1e-80 301.2 273 60.1
Aqoxy5G03614 Aquilegia oxysepala HOM05D005616 ORTHO05D006975 1.2e-78 297.4 193 74.6
Gohir.D04G132700 Gossypium hirsutum HOM05D005616 ORTHO05D006975 2.0e-78 296.6 246 61.8
COL.COLO4_25743 Corchorus olitorius HOM05D005616 ORTHO05D006975 4.4e-78 295.4 251 61.0
ATR0730G169 Amborella trichopoda HOM05D005616 ORTHO05D006975 5.4e-76 288.5 217 66.4
AUR62028615 Chenopodium quinoa HOM05D005616 ORTHO05D006975 1.9e-73 280.0 220 66.4
unitig_0.g2023 Utricularia gibba HOM05D005616 ORTHO05D006975 2.5e-73 279.6 202 67.8
Os02g0266000 Oryza sativa ssp. japonica HOM05D005616 ORTHO05D006975 4.3e-73 278.9 228 61.4
HPP92_011508 Vanilla planifolia HOM05D005616 ORTHO05D006975 5.6e-73 278.5 221 61.5
SHI03421 Sapria himalayana HOM05D005616 ORTHO05D006975 1.3e-72 277.3 206 65.0
Zm00001eb281510 Zea mays HOM05D005616 ORTHO05D006975 1.8e-71 273.5 239 56.5
Zm00001eb203980 Zea mays HOM05D005616 ORTHO05D006975 4.0e-71 272.3 239 59.8
SEGI_33372 Sequoiadendron giganteum HOM05D005616 ORTHO05D006975 3.8e-69 265.8 206 64.1
TAR369G1110 Trochodendron aralioides HOM05D005616 ORTHO05D006975 1.7e-61 240.4 215 61.4
Aqoxy332s005 Aquilegia oxysepala HOM05D005616 ORTHO05D006975 4.9e-61 238.8 179 69.3
Mapoly0041s0067 Marchantia polymorpha HOM05D005616 ORTHO05D006975 2.4e-60 236.5 206 55.8
Pp3c17_23550 Physcomitrium patens HOM05D005616 ORTHO05D006975 2.7e-59 233.0 227 52.9
AagrBONN_evm.TU.Sc2ySwM_228.1039 Anthoceros agrestis HOM05D005616 ORTHO05D006975 7.4e-57 224.9 205 52.7
CDE02G4500 Ceratophyllum demersum HOM05D005293 ORTHO05D006764 2.2e-53 213.4 224 50.4
SMO364G0619 Selaginella moellendorffii HOM05D005616 ORTHO05D006975 6.0e-51 205.3 209 50.7
Cre12.g519000 Chlamydomonas reinhardtii HOM05D005616 ORTHO05D006975 1.8e-50 203.8 229 45.0
MCO02G328 Micromonas commoda HOM05D005616 ORTHO05D006975 9.7e-49 198.0 241 39.8
AT1G29410 Arabidopsis thaliana HOM05D005616 ORTHO05D006975 2.2e-48 196.8 172 60.5
Dinv21739 Davidia involucrata HOM05D005616 ORTHO05D006975 1.8e-47 193.7 119 74.8
C02p02440 Brassica napus HOM05D005616 ORTHO05D006975 6.9e-47 191.8 159 64.2
CiPaw.01G059100 Carya illinoinensis HOM05D005616 ORTHO05D006975 1.4e-42 177.6 109 78.9
PRCOL_00006470 Prasinoderma coloniale HOM05D005616 ORTHO05D006975 1.1e-36 157.9 212 39.6
FAN17G0984 Fragaria x ananassa HOM05D002859 ORTHO05D003120 5.9e-30 135.6 138 55.1
Nn2g13147 Nelumbo nucifera HOM05D005616 ORTHO05D006975 1.0e-29 134.8 102 67.6
Potri.014G188400 Populus trichocarpa HOM05D005616 ORTHO05D006975 1.1e-28 131.3 130 56.2
MSTRG.13829 Avicennia marina HOM05D005616 ORTHO05D006975 2.4e-23 113.6 86 69.8
CBR_g37169 Chara braunii HOM05D005616 ORTHO05D006975 1.6e-22 110.9 167 37.1
DCAR_029632 Daucus carota HOM05D000090 ORTHO05D001584 4.5e-22 109.4 104 54.8
Dinv21738 Davidia involucrata HOM05D005616 ORTHO05D006975 1.7e-16 90.9 141 40.4
Cfa025268 Carpinus fangiana HOM05D003366 ORTHO05D004562 5.3e-15 85.9 310 30.0
Atru.chr12.48 Acer truncatum HOM05D005616 ORTHO05D006975 2.5e-12 77.0 112 42.9
Atru.chr7.2145 Acer truncatum HOM05D005616 ORTHO05D006975 8.8e-10 68.6 44 75.0
SGA_v2.0_scaffold250G44984 Striga asiatica HOM05D005616 ORTHO05D401959 4.8e-08 62.8 60 56.7


User provided reference genes

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