Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc06g051360.3 Solanum lycopersicum HOM05D007537 ORTHO05D009602 9.7e-217 756.5 381 100.0
Sopen06g017350 Solanum pennellii HOM05D007537 ORTHO05D009602 2.4e-207 725.3 381 96.3
PGSC0003DMG400024236 Solanum tuberosum HOM05D007537 ORTHO05D009602 1.1e-183 646.7 388 86.3
Nitab4.5_0000797g0160 Nicotiana tabacum HOM05D007537 ORTHO05D009602 2.4e-143 512.7 393 71.8
Nitab4.5_0008231g0020 Nicotiana tabacum HOM05D007537 ORTHO05D009602 3.5e-142 508.8 392 69.9
Peaxi162Scf00284g01051 Petunia axillaris HOM05D007537 ORTHO05D009602 5.5e-135 485.0 397 68.5
CSS0047961 Camellia sinensis var. sinensis HOM05D007537 ORTHO05D009602 9.4e-111 404.4 397 57.9
Cc02_g06360 Coffea canephora HOM05D007537 ORTHO05D009602 6.1e-110 401.7 389 56.8
CSS0001440 Camellia sinensis var. sinensis HOM05D007537 ORTHO05D009602 3.9e-109 399.1 404 56.7
Rhsim09G0177700 Rhododendron simsii HOM05D007537 ORTHO05D009602 8.2e-107 391.3 395 55.7
Duzib114G0965 Durio zibethinus HOM05D007537 ORTHO05D009602 9.1e-106 387.9 390 55.9
Actinidia13942 Actinidia chinensis HOM05D007537 ORTHO05D009602 4.7e-102 375.6 388 56.2
CSS0034530 Camellia sinensis var. sinensis HOM05D007537 ORTHO05D009602 3.7e-99 365.9 396 55.8
vmacro10037 Vaccinium macrocarpon HOM05D007537 ORTHO05D009602 4.8e-99 365.5 393 53.2
COL.COLO4_25746 Corchorus olitorius HOM05D007537 ORTHO05D009602 1.1e-98 364.4 393 53.9
Thecc.10G014900 Theobroma cacao HOM05D007537 ORTHO05D009602 2.6e-97 359.8 388 52.6
Nn2g10869 Nelumbo nucifera HOM05D007537 ORTHO05D009602 6.1e-94 348.6 411 51.6
Manes.07G130900 Manihot esculenta HOM05D007537 ORTHO05D009602 1.4e-93 347.4 395 53.2
TAR633G2636 Trochodendron aralioides HOM05D007537 ORTHO05D009602 2.3e-93 346.7 387 54.3
Cfa001307 Carpinus fangiana HOM05D007537 ORTHO05D009602 4.4e-92 342.4 389 52.4
CiPaw.01G299800 Carya illinoinensis HOM05D007537 ORTHO05D009602 8.3e-91 338.2 388 51.8
Aqoxy2G00863 Aquilegia oxysepala HOM05D007537 ORTHO05D009602 2.7e-89 333.2 396 51.3
arahy.Tifrunner.gnm1.ann1.EU49LP Arachis hypogaea HOM05D007537 ORTHO05D009602 5.0e-88 328.9 402 50.7
MSTRG.27338 Avicennia marina HOM05D007537 ORTHO05D009602 5.0e-88 328.9 402 50.5
Sabra08G0051400 Salix brachista HOM05D007537 ORTHO05D009602 3.2e-87 326.2 373 50.9
RcHm_v2.0_Chr1g0370441 Rosa chinensis HOM05D007537 ORTHO05D009602 1.2e-86 324.3 397 49.6
Haze_17238 Corylus avellana HOM05D007537 ORTHO05D009602 2.1e-86 323.6 389 51.9
arahy.Tifrunner.gnm1.ann1.QLS93X Arachis hypogaea HOM05D007537 ORTHO05D009602 2.7e-86 323.2 414 49.0
FAN10G0956 Fragaria x ananassa HOM05D007537 ORTHO05D009602 6.1e-86 322.0 397 49.1
Potri.008G069800 Populus trichocarpa HOM05D007537 ORTHO05D009602 1.0e-85 321.2 390 50.3
FAN03G1922 Fragaria x ananassa HOM05D007537 ORTHO05D009602 1.8e-85 320.5 394 48.7
FAN06G1236 Fragaria x ananassa HOM05D007537 ORTHO05D009602 7.5e-84 315.1 396 50.5
Gohir.D13G016000 Gossypium hirsutum HOM05D007537 ORTHO05D009602 1.3e-83 314.3 396 48.0
FAN01G2979 Fragaria x ananassa HOM05D007537 ORTHO05D009602 1.7e-83 313.9 396 50.3
DCAR_011821 Daucus carota HOM05D007537 ORTHO05D009602 3.7e-83 312.8 364 50.5
LjContig00357g0012610 Lotus japonicus HOM05D007537 ORTHO05D009602 3.7e-83 312.8 356 52.0
Prupe.2G251400 Prunus persica HOM05D007537 ORTHO05D009602 6.3e-83 312.0 401 49.9
Medtr5g082850 Medicago truncatula HOM05D007537 ORTHO05D009602 1.8e-82 310.5 355 50.7
FvH4_7g24610 Fragaria vesca HOM05D007537 ORTHO05D009602 4.5e-81 305.8 398 49.5
Hund13875 Selenicereus undatus HOM05D007537 ORTHO05D009602 5.9e-81 305.4 415 47.5
ClCG07G004310 Citrullus lanatus HOM05D007537 ORTHO05D009602 7.7e-81 305.1 390 47.9
Glyma.02G257900 Glycine max HOM05D007537 ORTHO05D009602 1.7e-80 303.9 375 46.7
Ca_05971_v3 Cicer arietinum L. HOM05D007537 ORTHO05D009602 5.0e-80 302.4 387 47.0
Ca_05972_v3 Cicer arietinum L. HOM05D007537 ORTHO05D009602 5.0e-80 302.4 387 47.0
Psat2g031640 Pisum sativum HOM05D007537 ORTHO05D009602 1.5e-79 300.8 386 47.2
PSO384G1417 Papaver somniferum HOM05D007537 ORTHO05D009602 2.5e-79 300.1 428 45.8
SGA_v2.0_scaffold44G16701 Striga asiatica HOM05D007537 ORTHO05D009602 1.2e-78 297.7 400 46.8
Ciclev10031789m.g Citrus clementina HOM05D007537 ORTHO05D009602 3.0e-77 293.1 369 48.5
GSVIVG01032801001 Vitis vinifera HOM05D007537 ORTHO05D009602 8.9e-77 291.6 317 53.9
Sed0013636 Sechium edule HOM05D007537 ORTHO05D009602 1.5e-76 290.8 387 46.8
Migut.F00693 Erythranthe guttata HOM05D007537 ORTHO05D009602 9.2e-74 281.6 317 52.1
Gorai.013G017500 Gossypium raimondii HOM05D007537 ORTHO05D009602 1.6e-73 280.8 395 45.3
VMungo0647G0018 Vigna mungo HOM05D007537 ORTHO05D009602 2.7e-73 280.0 387 45.0
Aa31LG3G4310 Aethionema arabicum HOM05D007537 ORTHO05D009602 4.5e-73 279.3 387 45.2
Phvul.008G223100 Phaseolus vulgaris HOM05D007537 ORTHO05D009602 1.3e-72 277.7 387 44.2
ECA233G1171 Erigeron canadensis HOM05D007537 ORTHO05D009602 1.7e-72 277.3 388 44.8
MBI03_g40958_MAGBIO Magnolia biondii HOM05D007537 ORTHO05D009602 2.3e-72 276.9 382 45.5
PGR044G1397 Punica granatum HOM05D007537 ORTHO05D009602 9.5e-71 271.6 395 44.3
TPR.G38413 Trifolium pratense HOM05D007537 ORTHO05D009602 4.7e-70 269.2 333 46.8
Gohir.A13G014800 Gossypium hirsutum HOM05D007537 ORTHO05D009602 2.3e-69 266.9 298 53.4
Lsat_1_v5_gn_8_12620 Lactuca sativa HOM05D007537 ORTHO05D009602 2.3e-69 266.9 300 49.0
THA.LOC104823184 Tarenaya hassleriana HOM05D007537 ORTHO05D009602 2.3e-69 266.9 359 47.6
AUR62022900 Chenopodium quinoa HOM05D007537 ORTHO05D009602 5.2e-69 265.8 396 45.2
BcaB04g21148 Brassica carinata HOM05D007537 ORTHO05D009602 1.2e-68 264.6 393 43.5
BolC1t05333H Brassica oleracea HOM05D007537 ORTHO05D009602 2.6e-68 263.5 392 42.9
AUR62012265 Chenopodium quinoa HOM05D007537 ORTHO05D009602 7.5e-68 261.9 449 41.0
BcaC09g48157 Brassica carinata HOM05D007537 ORTHO05D009602 1.3e-67 261.2 392 42.9
Ah.10g036610 Amaranthus hybridus HOM05D007537 ORTHO05D009602 3.7e-67 259.6 408 42.9
CARHR085730 Cardamine hirsuta HOM05D007537 ORTHO05D009602 4.9e-67 259.2 388 43.6
HanXRQChr08g0221761 Helianthus annuus HOM05D007537 ORTHO05D009602 6.4e-67 258.8 314 50.0
Thhalv10020993m.g Eutrema salsugineum HOM05D007537 ORTHO05D009602 1.4e-66 257.7 394 42.4
Lalb_Chr04g0250531 Lupinus albus HOM05D007537 ORTHO05D009602 1.9e-66 257.3 395 41.0
Sp3g09450 Schrenkiella parvula HOM05D007537 ORTHO05D009602 7.0e-66 255.4 391 43.0
Eucgr.J00197 Eucalyptus grandis HOM05D007537 ORTHO05D009602 2.3e-64 250.4 301 48.2
Carub.0003s1045 Capsella rubella HOM05D007537 ORTHO05D009602 2.1e-62 243.8 400 40.8
Dinv21742 Davidia involucrata HOM05D007537 ORTHO05D009602 2.1e-62 243.8 203 62.1
BraA01t04198Z Brassica rapa HOM05D007537 ORTHO05D009602 3.6e-62 243.0 389 40.9
CsaV3_5G010250 Cucumis sativus L. HOM05D007537 ORTHO05D009602 3.4e-60 236.5 280 51.1
MELO3C026792.2 Cucumis melo HOM05D007537 ORTHO05D009602 5.8e-60 235.7 279 50.9
AL3G22670 Arabidopsis lyrata HOM05D007537 ORTHO05D009602 7.5e-60 235.3 393 42.7
AT3G11150 Arabidopsis thaliana HOM05D007537 ORTHO05D009602 1.9e-58 230.7 391 41.2
Sc10g0002440 Simmondsia chinensis HOM05D007537 ORTHO05D009602 3.0e-56 223.4 389 41.4
EL10Ac2g04847 Beta vulgaris HOM05D007537 ORTHO05D009602 4.3e-55 219.5 400 39.0
BcaB04g21146 Brassica carinata HOM05D007537 ORTHO05D009602 5.8e-44 182.6 282 42.9
Oeu004692.1 Olea europaea HOM05D007537 ORTHO05D009602 2.5e-39 167.2 228 45.6
Atru.chr12.52 Acer truncatum HOM05D007537 ORTHO05D009602 7.3e-39 165.6 331 37.2
HPP92_007582 Vanilla planifolia HOM05D007537 ORTHO05D009602 7.3e-39 165.6 377 34.7
CSS0044280 Camellia sinensis var. sinensis HOM05D007537 ORTHO05D009602 2.1e-33 147.5 121 59.5
ATR0681G199 Amborella trichopoda HOM05D007537 ORTHO05D009602 1.3e-32 144.8 390 33.1
Os01g0830500 Oryza sativa ssp. japonica HOM05D007537 ORTHO05D009602 3.3e-31 140.2 352 31.8
MD01G1154400 Malus domestica HOM05D007537 ORTHO05D009602 1.8e-29 134.4 147 51.0
Glyma.14G058602 Glycine max HOM05D007537 ORTHO05D009602 2.7e-25 120.6 201 41.8
SEGI_28444 Sequoiadendron giganteum HOM05D007537 ORTHO05D008256 1.5e-20 104.8 388 27.1
SEGI_29994 Sequoiadendron giganteum HOM05D007537 ORTHO05D008256 1.5e-20 104.8 388 27.1
Oeu004690.1 Olea europaea HOM05D007537 ORTHO05D009602 6.0e-17 92.8 110 50.0
MD01G1154300 Malus domestica HOM05D007537 ORTHO05D009602 4.1e-13 80.1 97 59.8
SEGI_01266 Sequoiadendron giganteum HOM05D007537 ORTHO05D009602 6.9e-13 79.3 398 22.9
Peaxi162Scf00038g00918 Petunia axillaris HOM05D006831 ORTHO05D008256 2.6e-12 77.4 348 25.9
SEGI_41305 Sequoiadendron giganteum HOM05D007537 ORTHO05D009602 2.9e-11 73.9 385 22.1
Hma1.2p1_0430F.1_g151466 Hydrangea macrophylla HOM05D006831 ORTHO05D008256 5.5e-10 69.7 347 24.8
Rhsim08G0227100 Rhododendron simsii HOM05D006831 ORTHO05D008256 5.5e-10 69.7 347 25.6
Sc24g0000130 Simmondsia chinensis HOM05D000018 ORTHO05D001766 1.2e-09 68.6 215 27.4
DCAR_016191 Daucus carota HOM05D006831 ORTHO05D008256 2.7e-09 67.4 325 21.8
EL10Ac8g19896 Beta vulgaris HOM05D000018 ORTHO05D001766 6.1e-09 66.2 219 30.1
CSS0014632 Camellia sinensis var. sinensis HOM05D006831 ORTHO05D008256 1.0e-08 65.5 363 24.0
vmacro18857 Vaccinium macrocarpon HOM05D006831 ORTHO05D008256 1.0e-08 65.5 371 24.8
Dinv30442 Davidia involucrata HOM05D006831 ORTHO05D008256 5.1e-08 63.2 326 25.5
PSO339G1224 Papaver somniferum HOM05D000858 ORTHO05D001578 5.1e-08 63.2 243 25.9
Sopen05g011720 Solanum pennellii HOM05D000004 ORTHO05D000002 6.7e-08 62.8 37 75.7
QL05p020342 Quercus lobata HOM05D006831 ORTHO05D008256 8.7e-08 62.4 296 24.0
Ciclev10025849m.g Citrus clementina HOM05D006831 ORTHO05D008256 3.3e-07 60.5 322 23.6
FAN02G3719 Fragaria x ananassa HOM05D006831 ORTHO05D008256 3.3e-07 60.5 321 23.4
Prupe.3G060100 Prunus persica HOM05D006831 ORTHO05D008256 5.7e-07 59.7 344 23.8
CAN.G1143.6 Capsicum annuum HOM05D006831 ORTHO05D008256 7.4e-07 59.3 90 32.2
Gohir.D10G067400 Gossypium hirsutum HOM05D006831 ORTHO05D008256 7.4e-07 59.3 352 23.3
FAN14G1280 Fragaria x ananassa HOM05D006831 ORTHO05D008256 9.7e-07 58.9 310 24.5
Psat4g173520 Pisum sativum HOM05D000858 ORTHO05D001578 9.7e-07 58.9 259 24.7
arahy.Tifrunner.gnm1.ann1.PZV35V Arachis hypogaea HOM05D000858 ORTHO05D001578 1.3e-06 58.5 300 24.3
Nn6g35309 Nelumbo nucifera HOM05D006831 ORTHO05D008256 1.3e-06 58.5 314 24.8
SMO172G0001 Selaginella moellendorffii HOM05D000018 ORTHO05D001172 1.3e-06 58.5 230 22.2
arahy.Tifrunner.gnm1.ann1.GJFG9F Arachis hypogaea HOM05D000018 ORTHO05D001766 1.6e-06 58.2 213 26.3
Gohir.A10G066100 Gossypium hirsutum HOM05D006831 ORTHO05D008256 1.6e-06 58.2 350 22.9
Lj6g0027045 Lotus japonicus HOM05D000018 ORTHO05D000187 1.6e-06 58.2 236 22.0
Glyma.02G136100 Glycine max HOM05D000018 ORTHO05D001172 2.2e-06 57.8 282 24.5
Glyma.18G184900 Glycine max HOM05D000018 ORTHO05D000187 2.2e-06 57.8 222 25.2
Potri.011G047800 Populus trichocarpa HOM05D006831 ORTHO05D008256 2.2e-06 57.8 308 22.4
arahy.Tifrunner.gnm1.ann1.BL6FL8 Arachis hypogaea HOM05D000018 ORTHO05D000187 2.8e-06 57.4 241 24.1
DCAR_010021 Daucus carota HOM05D000018 ORTHO05D001766 2.8e-06 57.4 226 24.8
Gorai.011G071900 Gossypium raimondii HOM05D006831 ORTHO05D008256 2.8e-06 57.4 350 22.9
Lj5A54G57 Lonicera japonica HOM05D006831 ORTHO05D008256 2.8e-06 57.4 358 21.8
Potri.001G189400 Populus trichocarpa HOM05D006831 ORTHO05D008256 2.8e-06 57.4 302 23.8
Prupe.6G258800 Prunus persica HOM05D000018 ORTHO05D000187 3.7e-06 57.0 221 22.6
Sopen03g039800 Solanum pennellii HOM05D006831 ORTHO05D008256 3.7e-06 57.0 85 34.1
PGSC0003DMG400002528 Solanum tuberosum HOM05D006831 ORTHO05D008256 3.7e-06 57.0 85 34.1
Sopen03g035210 Solanum pennellii HOM05D000018 ORTHO05D007339 4.8e-06 56.6 234 26.1
Actinidia32697 Actinidia chinensis HOM05D006831 ORTHO05D008256 6.3e-06 56.2 270 25.6
Manes.15G101500 Manihot esculenta HOM05D000858 ORTHO05D001578 6.3e-06 56.2 265 25.3
Nitab4.5_0012282g0010 Nicotiana tabacum HOM05D000018 ORTHO05D001172 6.3e-06 56.2 303 23.8
Pp3c6_22580 Physcomitrium patens HOM05D000018 ORTHO05D001513 6.3e-06 56.2 293 22.9
RhsimUnG0204600 Rhododendron simsii HOM05D000858 ORTHO05D001578 6.3e-06 56.2 257 26.1
Solyc03g116270.3 Solanum lycopersicum HOM05D000018 ORTHO05D007339 6.3e-06 56.2 234 26.1
MSTRG.11030 Avicennia marina HOM05D006831 ORTHO05D008256 8.2e-06 55.8 322 22.7
Lsat_1_v5_gn_7_28201 Lactuca sativa HOM05D000858 ORTHO05D001578 8.2e-06 55.8 244 24.6
RcHm_v2.0_Chr2g0140341 Rosa chinensis HOM05D006831 ORTHO05D008256 8.2e-06 55.8 346 22.8
Hund10334 Selenicereus undatus HOM05D000858 ORTHO05D001578 8.2e-06 55.8 255 25.1


User provided reference genes

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