Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc06g051160.4 Solanum lycopersicum HOM05D007737 ORTHO05D009754 5.7e-88 327.4 149 100.0
PGSC0003DMG400015652 Solanum tuberosum HOM05D007737 ORTHO05D009754 2.5e-75 285.4 136 94.1
Nitab4.5_0011440g0030 Nicotiana tabacum HOM05D007737 ORTHO05D009754 5.9e-61 237.7 136 80.1
Sopen06g017020 Solanum pennellii HOM05D007737 ORTHO05D009754 9.5e-51 203.8 97 95.9
RcHm_v2.0_Chr0c20g0500251 Rosa chinensis HOM05D007737 ORTHO05D009754 1.8e-49 199.5 122 69.7
Oeu029042.1 Olea europaea HOM05D007737 ORTHO05D009754 5.2e-49 198.0 137 66.4
Hma1.2p1_0601F.1_g187210 Hydrangea macrophylla HOM05D007737 ORTHO05D009754 7.5e-48 194.1 127 68.5
Manes.12G126400 Manihot esculenta HOM05D007737 ORTHO05D009754 7.5e-48 194.1 118 72.0
Lsat_1_v5_gn_7_11721 Lactuca sativa HOM05D007737 ORTHO05D009754 1.3e-47 193.4 143 61.5
MSTRG.4970 Avicennia marina HOM05D007737 ORTHO05D009754 3.2e-46 188.7 124 64.5
Gohir.A05G333700 Gossypium hirsutum HOM05D007737 ORTHO05D009754 9.2e-46 187.2 121 66.1
Gohir.D04G072800 Gossypium hirsutum HOM05D007737 ORTHO05D009754 9.2e-46 187.2 132 61.4
CAN.G1183.16 Capsicum annuum HOM05D007737 ORTHO05D009754 1.6e-45 186.4 136 64.0
Gorai.012G081800 Gossypium raimondii HOM05D007737 ORTHO05D009754 1.6e-45 186.4 121 66.1
HanXRQChr06g0168511 Helianthus annuus HOM05D007737 ORTHO05D009754 3.5e-45 185.3 102 73.5
Cc02_g25850 Coffea canephora HOM05D007737 ORTHO05D009754 4.6e-45 184.9 138 60.1
arahy.Tifrunner.gnm1.ann1.J0MG2W Arachis hypogaea HOM05D007737 ORTHO05D009754 7.8e-45 184.1 110 72.7
Migut.N01704 Erythranthe guttata HOM05D007737 ORTHO05D009754 3.0e-44 182.2 100 74.0
Sabra14G0139900 Salix brachista HOM05D007737 ORTHO05D009754 3.3e-43 178.7 101 73.3
DCAR_029388 Daucus carota HOM05D007737 ORTHO05D009754 8.1e-42 174.1 132 60.6
Dinv43570 Davidia involucrata HOM05D007737 ORTHO05D009754 1.1e-41 173.7 120 65.0
COL.COLO4_19346 Corchorus olitorius HOM05D007737 ORTHO05D009754 8.9e-41 170.6 131 58.0
SalBow4G2387 Salvia bowleyana HOM05D007737 ORTHO05D009754 2.0e-40 169.5 163 48.5
TAR375G1083 Trochodendron aralioides HOM05D007737 ORTHO05D009754 7.5e-40 167.5 108 65.7
Psat0s4349g0040 Pisum sativum HOM05D007737 ORTHO05D009754 2.2e-39 166.0 137 56.2
PGR119G2515 Punica granatum HOM05D007737 ORTHO05D009754 4.9e-39 164.9 120 60.8
CANSAT35G0994 Cannabis sativa HOM05D007737 ORTHO05D009754 1.9e-38 162.9 111 62.2
Actinidia05801 Actinidia chinensis HOM05D007737 ORTHO05D009754 2.4e-38 162.5 118 62.7
Psat0s2829g0120 Pisum sativum HOM05D007737 ORTHO05D009754 3.2e-38 162.2 134 56.0
LjContig00564g0006359 Lotus japonicus HOM05D007737 ORTHO05D009754 7.1e-38 161.0 107 65.4
Nitab4.5_0000507g0110 Nicotiana tabacum HOM05D007737 ORTHO05D009754 7.1e-38 161.0 108 70.4
arahy.Tifrunner.gnm1.ann1.HH45UC Arachis hypogaea HOM05D007737 ORTHO05D009754 1.6e-37 159.8 137 54.7
Glyma.02G276300 Glycine max HOM05D007737 ORTHO05D009754 2.1e-37 159.5 132 59.1
Thecc.10G000900 Theobroma cacao HOM05D007737 ORTHO05D009754 2.1e-37 159.5 133 51.1
Duzib128G0131 Durio zibethinus HOM05D007737 ORTHO05D009754 2.7e-37 159.1 131 56.5
Actinidia30967 Actinidia chinensis HOM05D007737 ORTHO05D009754 1.3e-36 156.8 117 59.0
arahy.Tifrunner.gnm1.ann1.BW18VB Arachis hypogaea HOM05D007737 ORTHO05D009754 1.3e-36 156.8 137 54.7
arahy.Tifrunner.gnm1.ann1.4BAK6K Arachis hypogaea HOM05D004879 ORTHO05D009754 3.0e-36 155.6 118 61.9
QL04p025132 Quercus lobata HOM05D007737 ORTHO05D009754 3.0e-36 155.6 121 61.2
TWI14G0846 Tripterygium wilfordii HOM05D007737 ORTHO05D009754 3.0e-36 155.6 124 58.1
TWI23G0770 Tripterygium wilfordii HOM05D007737 ORTHO05D009754 3.9e-36 155.2 125 56.8
Ciclev10022762m.g Citrus clementina HOM05D007737 ORTHO05D009754 8.6e-36 154.1 116 60.3
CsaV3_6G006540 Cucumis sativus L. HOM05D007737 ORTHO05D009754 1.1e-35 153.7 118 56.8
CSS0024286 Camellia sinensis var. sinensis HOM05D007737 ORTHO05D009754 1.5e-35 153.3 119 59.7
Sed0019089 Sechium edule HOM05D007737 ORTHO05D009754 1.5e-35 153.3 132 51.5
FAN03G2224 Fragaria x ananassa HOM05D007737 ORTHO05D009754 5.6e-35 151.4 116 57.8
Lalb_Chr17g0347681 Lupinus albus HOM05D007737 ORTHO05D009754 5.6e-35 151.4 105 61.9
FvH4_7g08430 Fragaria vesca HOM05D007737 ORTHO05D009754 7.3e-35 151.0 116 57.8
MD02G1228500 Malus domestica HOM05D007737 ORTHO05D009754 1.2e-34 150.2 127 56.7
Sc02g0003320 Simmondsia chinensis HOM05D007737 ORTHO05D009754 4.7e-34 148.3 111 60.4
ECA236G0282 Erigeron canadensis HOM05D007737 ORTHO05D009754 8.1e-34 147.5 100 61.0
CiPaw.13G019700 Carya illinoinensis HOM05D007737 ORTHO05D009754 2.4e-33 146.0 129 54.3
SGA_v2.0_scaffold77G25232 Striga asiatica HOM05D007737 ORTHO05D009754 4.0e-33 145.2 89 65.2
Eucgr.D01138 Eucalyptus grandis HOM05D007737 ORTHO05D009754 1.5e-32 143.3 118 52.5
Psat0s4932g0040 Pisum sativum HOM05D007737 ORTHO05D009754 4.4e-32 141.7 133 48.9
Phvul.008G205200 Phaseolus vulgaris HOM05D007737 ORTHO05D009754 2.2e-31 139.4 131 52.7
Potri.014G179800 Populus trichocarpa HOM05D007737 ORTHO05D009754 3.8e-31 138.7 99 60.6
AUR62023349 Chenopodium quinoa HOM05D007737 ORTHO05D009754 5.4e-30 134.8 135 48.9
Os04g0589200 Oryza sativa ssp. japonica HOM05D007737 ORTHO05D009754 4.6e-29 131.7 117 49.6
Aa31LG8G4530 Aethionema arabicum HOM05D007345 ORTHO05D009277 6.0e-29 131.3 110 51.8
FAN10G0020 Fragaria x ananassa HOM05D007737 ORTHO05D009754 7.8e-29 131.0 107 54.2
AUR62013808 Chenopodium quinoa HOM05D007737 ORTHO05D009754 1.7e-28 129.8 98 57.1
Atru.chr5.19 Acer truncatum HOM05D007737 ORTHO05D009754 6.6e-28 127.9 88 61.4
GSVIVG01018401001 Vitis vinifera HOM05D007737 ORTHO05D009754 7.3e-27 124.4 115 53.0
PSO210G3843 Papaver somniferum HOM05D007737 ORTHO05D009754 2.8e-26 122.5 119 48.7
AagrBONN_evm.TU.Sc2ySwM_344.418 Anthoceros agrestis HOM05D007737 ORTHO05D009754 3.6e-26 122.1 133 44.4
Mapoly0099s0043 Marchantia polymorpha HOM05D007737 ORTHO05D009754 3.6e-26 122.1 86 59.3
PSO210G3425 Papaver somniferum HOM05D007737 ORTHO05D009754 4.7e-26 121.7 134 42.5
Carub.0003s1738 Capsella rubella HOM05D007737 ORTHO05D009754 1.7e-23 113.2 115 43.5
THA.LOC104806480 Tarenaya hassleriana HOM05D007737 ORTHO05D009754 2.2e-23 112.8 107 47.7
BraA01t03730Z Brassica rapa HOM05D007737 ORTHO05D009754 4.9e-23 111.7 116 41.4
unitig_22.g5837 Utricularia gibba HOM05D007737 ORTHO05D009754 2.4e-22 109.4 81 56.8
Medtr5g088570 Medicago truncatula HOM05D004879 ORTHO05D008271 4.2e-22 108.6 93 53.8
AL3G30770 Arabidopsis lyrata HOM05D007737 ORTHO05D009754 7.1e-22 107.8 99 44.4
BcaC09g48726 Brassica carinata HOM05D001802 ORTHO05D001788 9.3e-22 107.5 116 41.4
CARHR093000 Cardamine hirsuta HOM05D007737 ORTHO05D009754 2.1e-21 106.3 115 41.7
C01p46550 Brassica napus HOM05D007737 ORTHO05D009754 2.7e-21 105.9 115 40.9
Sp3g15800 Schrenkiella parvula HOM05D007737 ORTHO05D009754 2.7e-21 105.9 111 40.5
Thhalv10021734m.g Eutrema salsugineum HOM05D007737 ORTHO05D009754 4.6e-21 105.1 101 43.6
AT3G17668 Arabidopsis thaliana HOM05D007737 ORTHO05D009754 7.8e-21 104.4 120 39.2
HPP92_007265 Vanilla planifolia HOM05D007737 ORTHO05D009754 1.7e-20 103.2 94 46.8
Pp3c17_5190 Physcomitrium patens HOM05D007737 ORTHO05D009754 2.3e-20 102.8 89 49.4
Pp3c8_23020 Physcomitrium patens HOM05D007737 ORTHO05D009754 6.6e-20 101.3 88 51.1
BcaB04g20827 Brassica carinata HOM05D001802 ORTHO05D001788 2.5e-19 99.4 111 40.5
Prupe.2G111200 Prunus persica HOM05D007737 ORTHO05D009754 2.5e-19 99.4 93 47.3
vmacro13551 Vaccinium macrocarpon HOM05D007737 ORTHO05D009754 4.3e-19 98.6 153 37.9
ClCG06G000750 Citrullus lanatus HOM05D007737 ORTHO05D009754 2.0e-16 89.7 80 53.8
FAN06G2876 Fragaria x ananassa HOM05D007737 ORTHO05D009754 2.6e-16 89.4 65 63.1
Peaxi162Scf01343g00168 Petunia axillaris HOM05D007737 ORTHO05D009754 1.1e-14 84.0 120 44.2
Aqoxy3G02490 Aquilegia oxysepala HOM05D007737 ORTHO05D009754 1.9e-14 83.2 126 39.7
MELO3C022466.2 Cucumis melo HOM05D007737 ORTHO05D009754 4.2e-14 82.0 132 37.9
PRCOL_00000087 Prasinoderma coloniale HOM05D003082 ORTHO05D003497 9.3e-14 80.9 80 46.2
Cre02.g091193 Chlamydomonas reinhardtii HOM05D007737 ORTHO05D009754 1.5e-11 73.6 73 46.6
HPP92_007269 Vanilla planifolia HOM05D007737 ORTHO05D009754 1.3e-10 70.5 42 66.7
EL10Ac1g00699 Beta vulgaris HOM05D007737 ORTHO05D009754 1.1e-09 67.4 33 84.8
A01p36650 Brassica napus HOM05D007737 ORTHO05D009754 2.9e-07 59.3 114 33.3


User provided reference genes

Program Settings