Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc06g050220.4 Solanum lycopersicum HOM05D002309 ORTHO05D051145 3.8e-41 171.0 83 100.0
PGSC0003DMG400029072 Solanum tuberosum HOM05D002309 ORTHO05D051145 2.1e-15 85.5 56 76.8
SalBow5G5020 Salvia bowleyana HOM05D002309 ORTHO05D002869 7.7e-10 67.0 46 69.6
Lj8C58T2 Lonicera japonica HOM05D002309 ORTHO05D002869 1.0e-09 66.6 45 68.9
Cpa.g.sc19.103 Carica papaya HOM05D002309 ORTHO05D002869 1.7e-09 65.9 48 66.7
Cc02_g05770 Coffea canephora HOM05D002309 ORTHO05D002869 2.2e-09 65.5 49 65.3
Migut.F00611 Erythranthe guttata HOM05D002309 ORTHO05D002869 2.9e-09 65.1 45 68.9
DCAR_028547 Daucus carota HOM05D002309 ORTHO05D002869 5.0e-09 64.3 50 62.0
Nitab4.5_0000263g0020 Nicotiana tabacum HOM05D002309 ORTHO05D002869 5.0e-09 64.3 44 72.7
Nitab4.5_0000928g0110 Nicotiana tabacum HOM05D002309 ORTHO05D002869 5.0e-09 64.3 44 72.7
Oeu026176.1 Olea europaea HOM05D002309 ORTHO05D002869 5.0e-09 64.3 49 63.3
DCAR_028550 Daucus carota HOM05D002309 ORTHO05D022482 6.5e-09 63.9 49 63.3
MSTRG.184 Avicennia marina HOM05D002309 ORTHO05D002869 8.5e-09 63.5 49 63.3
Migut.F01268 Erythranthe guttata HOM05D002309 ORTHO05D002869 8.5e-09 63.5 45 68.9
VMungo0647G1234 Vigna mungo HOM05D002309 ORTHO05D002869 8.5e-09 63.5 45 66.7
ECA247G3103 Erigeron canadensis HOM05D002309 ORTHO05D002869 1.1e-08 63.2 50 58.0
Eucgr.G03107 Eucalyptus grandis HOM05D002309 ORTHO05D002869 1.1e-08 63.2 44 65.9
Phvul.001G247900 Phaseolus vulgaris HOM05D002309 ORTHO05D002869 1.5e-08 62.8 49 61.2
Atru.chr12.126 Acer truncatum HOM05D002309 ORTHO05D002869 1.9e-08 62.4 48 62.5
Medtr5g083750 Medicago truncatula HOM05D002309 ORTHO05D002869 1.9e-08 62.4 42 66.7
SGA_v2.0_scaffold282G46923 Striga asiatica HOM05D002309 ORTHO05D002869 1.9e-08 62.4 49 61.2
Ciclev10032291m.g Citrus clementina HOM05D002309 ORTHO05D002869 3.2e-08 61.6 48 62.5
Duzib187G1222 Durio zibethinus HOM05D002309 ORTHO05D002869 3.2e-08 61.6 44 63.6
Lalb_Chr11g0075161 Lupinus albus HOM05D002309 ORTHO05D002869 3.2e-08 61.6 49 59.2
Duzib147G1573 Durio zibethinus HOM05D002309 ORTHO05D002869 4.2e-08 61.2 47 59.6
Gohir.A10G160800 Gossypium hirsutum HOM05D002309 ORTHO05D002869 4.2e-08 61.2 48 60.4
Gohir.D10G085500 Gossypium hirsutum HOM05D002309 ORTHO05D002869 4.2e-08 61.2 48 60.4
Gorai.011G093400 Gossypium raimondii HOM05D002309 ORTHO05D002869 4.2e-08 61.2 48 60.4
VMungo1080G1813 Vigna mungo HOM05D002309 ORTHO05D002869 4.2e-08 61.2 49 59.2
CAN.G957.4 Capsicum annuum HOM05D002309 ORTHO05D002869 5.5e-08 60.8 41 70.7
Ca_06013_v3 Cicer arietinum L. HOM05D002309 ORTHO05D002869 5.5e-08 60.8 46 58.7
LjContig00357g0015767 Lotus japonicus HOM05D002309 ORTHO05D002869 5.5e-08 60.8 45 62.2
Nitab4.5_0000409g0020 Nicotiana tabacum HOM05D002309 ORTHO05D002869 5.5e-08 60.8 48 60.4
TWI73G0725 Tripterygium wilfordii HOM05D002309 ORTHO05D002869 5.5e-08 60.8 45 64.4
Oeu043148.1 Olea europaea HOM05D002309 ORTHO05D002869 7.2e-08 60.5 44 65.9
RcHm_v2.0_Chr1g0371441 Rosa chinensis HOM05D002309 ORTHO05D002869 7.2e-08 60.5 55 56.4
Solyc06g050770.3 Solanum lycopersicum HOM05D002309 ORTHO05D002869 7.2e-08 60.5 40 72.5
Manes.10G006600 Manihot esculenta HOM05D002309 ORTHO05D002869 9.4e-08 60.1 45 62.2
Potri.010G181900 Populus trichocarpa HOM05D002309 ORTHO05D002869 9.4e-08 60.1 48 58.3
TAR633G1258 Trochodendron aralioides HOM05D002309 ORTHO05D002869 9.4e-08 60.1 49 55.1
MD01G1161100 Malus domestica HOM05D002309 ORTHO05D002869 1.2e-07 59.7 49 57.1
Sopen06g016410 Solanum pennellii HOM05D002309 ORTHO05D002869 1.2e-07 59.7 38 76.3
PGR142G4023 Punica granatum HOM05D002309 ORTHO05D002869 2.1e-07 58.9 41 63.4
Duzib264G0333 Durio zibethinus HOM05D002309 ORTHO05D002869 2.7e-07 58.5 44 59.1
Lju41A22T18 Lonicera japonica HOM05D002309 ORTHO05D002869 2.7e-07 58.5 41 68.3
PGSC0003DMG400017893 Solanum tuberosum HOM05D002309 ORTHO05D002869 2.7e-07 58.5 38 73.7
MSTRG.8361 Avicennia marina HOM05D002309 ORTHO05D002869 4.7e-07 57.8 45 62.2
Glyma.02G260400 Glycine max HOM05D002309 ORTHO05D002869 4.7e-07 57.8 42 64.3
Phvul.008G219300 Phaseolus vulgaris HOM05D002309 ORTHO05D002869 4.7e-07 57.8 41 68.3
Sabra10G0139300 Salix brachista HOM05D002309 ORTHO05D002869 4.7e-07 57.8 48 58.3
Thecc.04G025800 Theobroma cacao HOM05D002309 ORTHO05D002869 4.7e-07 57.8 39 69.2
TPR.G28642 Trifolium pratense HOM05D002309 ORTHO05D002869 6.1e-07 57.4 40 70.0
CiPaw.01G303400 Carya illinoinensis HOM05D002309 ORTHO05D002869 8.0e-07 57.0 45 60.0
Gohir.A07G225300 Gossypium hirsutum HOM05D002309 ORTHO05D002869 8.0e-07 57.0 40 67.5
Gohir.D07G232500 Gossypium hirsutum HOM05D002309 ORTHO05D002869 8.0e-07 57.0 40 67.5
Gorai.001G267800 Gossypium raimondii HOM05D002309 ORTHO05D002869 8.0e-07 57.0 40 67.5
HanXRQChr06g0174931 Helianthus annuus HOM05D002309 ORTHO05D002869 1.0e-06 56.6 59 50.8
THA.LOC104810133 Tarenaya hassleriana HOM05D002309 ORTHO05D002869 1.0e-06 56.6 49 53.1
A04p03960 Brassica napus HOM05D002309 ORTHO05D002869 1.4e-06 56.2 49 53.1
CANSAT56G0319 Cannabis sativa HOM05D002309 ORTHO05D002869 1.4e-06 56.2 45 57.8
TPR.G20200 Trifolium pratense HOM05D002309 ORTHO05D002869 1.4e-06 56.2 42 61.9
TAR623G0851 Trochodendron aralioides HOM05D002309 ORTHO05D002869 1.4e-06 56.2 45 55.6
GSVIVG01032725001 Vitis vinifera HOM05D002309 ORTHO05D002869 1.4e-06 56.2 44 56.8
CARHR166340 Cardamine hirsuta HOM05D002309 ORTHO05D002869 1.8e-06 55.8 45 57.8
Cfa017089 Carpinus fangiana HOM05D002309 ORTHO05D002869 1.8e-06 55.8 49 49.0
Haze_21111 Corylus avellana HOM05D002309 ORTHO05D002869 1.8e-06 55.8 49 49.0
Lj2A64T50 Lonicera japonica HOM05D002309 ORTHO05D002869 1.8e-06 55.8 49 51.0
Peaxi162Scf00284g00131 Petunia axillaris HOM05D002309 ORTHO05D002869 1.8e-06 55.8 42 66.7
Psat2g029080 Pisum sativum HOM05D002309 ORTHO05D002869 1.8e-06 55.8 42 59.5
TWI36G1150 Tripterygium wilfordii HOM05D002309 ORTHO05D002869 1.8e-06 55.8 45 60.0
AL5G37510 Arabidopsis lyrata HOM05D002309 ORTHO05D002869 3.0e-06 55.1 49 51.0
AT3G56190 Arabidopsis thaliana HOM05D002309 ORTHO05D002869 3.0e-06 55.1 49 51.0
BcaC02g09812 Brassica carinata HOM05D002309 ORTHO05D002869 3.0e-06 55.1 49 51.0
A07p22820 Brassica napus HOM05D002309 ORTHO05D002869 3.0e-06 55.1 49 51.0
C04p36340 Brassica napus HOM05D002309 ORTHO05D002869 3.0e-06 55.1 49 51.0
BraA07t29947Z Brassica rapa HOM05D002309 ORTHO05D002869 3.0e-06 55.1 49 51.0
Carub.0005s2297 Capsella rubella HOM05D002309 ORTHO05D002869 3.0e-06 55.1 49 51.0
Sp5g06310 Schrenkiella parvula HOM05D002309 ORTHO05D002869 3.0e-06 55.1 49 51.0
TWI36G0453 Tripterygium wilfordii HOM05D002309 ORTHO05D002869 3.0e-06 55.1 41 65.9
BcaC07g39934 Brassica carinata HOM05D002309 ORTHO05D002869 4.0e-06 54.7 49 53.1
BolC8t50770H Brassica oleracea HOM05D002309 ORTHO05D002869 4.0e-06 54.7 49 53.1
Dinv21807 Davidia involucrata HOM05D002309 ORTHO05D002869 4.0e-06 54.7 45 57.8
Dinv35433 Davidia involucrata HOM05D002309 ORTHO05D002869 4.0e-06 54.7 49 49.0
Lj6g0008527 Lotus japonicus HOM05D002309 ORTHO05D002869 4.0e-06 54.7 44 59.1
Sed0009542 Sechium edule HOM05D002309 ORTHO05D002869 4.0e-06 54.7 44 59.1
HPP92_003321 Vanilla planifolia HOM05D002309 ORTHO05D002869 4.0e-06 54.7 43 58.1
ClCG11G005890 Citrullus lanatus HOM05D002309 ORTHO05D002869 5.2e-06 54.3 41 61.0
Psat5g130240 Pisum sativum HOM05D002309 ORTHO05D002869 5.2e-06 54.3 40 67.5
Solyc05g052310.3 Solanum lycopersicum HOM05D002309 ORTHO05D002869 5.2e-06 54.3 37 67.6
Sopen05g030870 Solanum pennellii HOM05D002309 ORTHO05D002869 5.2e-06 54.3 37 67.6
PGSC0003DMG400011650 Solanum tuberosum HOM05D002309 ORTHO05D002869 5.2e-06 54.3 37 67.6
arahy.Tifrunner.gnm1.ann1.E1MFZQ Arachis hypogaea HOM05D002309 ORTHO05D002869 6.8e-06 53.9 37 64.9
arahy.Tifrunner.gnm1.ann1.GKX7WC Arachis hypogaea HOM05D002309 ORTHO05D002869 6.8e-06 53.9 37 64.9
BcaB02g08381 Brassica carinata HOM05D002309 ORTHO05D002869 6.8e-06 53.9 49 51.0
Gohir.A11G065400 Gossypium hirsutum HOM05D002309 ORTHO05D002869 6.8e-06 53.9 39 64.1
Potri.016G129900 Populus trichocarpa HOM05D002309 ORTHO05D002869 6.8e-06 53.9 49 49.0
EL10Ac2g04299 Beta vulgaris HOM05D002309 ORTHO05D002869 8.8e-06 53.5 44 56.8
BcaB01g00021 Brassica carinata HOM05D002309 ORTHO05D002869 8.8e-06 53.5 49 51.0
C06p23370 Brassica napus HOM05D002309 ORTHO05D002869 8.8e-06 53.5 54 51.9
MELO3C019988.2 Cucumis melo HOM05D002309 ORTHO05D002869 8.8e-06 53.5 41 58.5
Thhalv10006137m.g Eutrema salsugineum HOM05D002309 ORTHO05D002869 8.8e-06 53.5 48 52.1
THA.LOC104824344 Tarenaya hassleriana HOM05D002309 ORTHO05D002869 8.8e-06 53.5 43 55.8


User provided reference genes

Program Settings