Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc06g050200.2 Solanum lycopersicum HOM05D004766 ORTHO05D006159 1.1e-125 453.4 234 100.0
PGSC0003DMG400024309 Solanum tuberosum HOM05D004766 ORTHO05D006159 9.8e-103 377.1 251 81.3
CAN.G169.5 Capsicum annuum HOM05D004766 ORTHO05D006159 7.3e-90 334.3 250 72.0
Nitab4.5_0003695g0010 Nicotiana tabacum HOM05D004766 ORTHO05D006159 5.2e-88 328.2 246 73.2
Nitab4.5_0000109g0520 Nicotiana tabacum HOM05D004766 ORTHO05D006159 8.9e-88 327.4 246 73.2
Peaxi162Scf00739g00014 Petunia axillaris HOM05D004766 ORTHO05D006159 4.9e-86 321.6 250 69.2
Dinv21831 Davidia involucrata HOM05D004766 ORTHO05D006159 9.6e-82 307.4 250 65.6
Actinidia29749 Actinidia chinensis HOM05D004766 ORTHO05D006159 2.6e-79 299.3 250 63.2
Cc02_g05520 Coffea canephora HOM05D004766 ORTHO05D006159 7.6e-79 297.7 250 63.2
Sopen06g015640 Solanum pennellii HOM05D000002 ORTHO05D000001 1.3e-78 297.0 201 81.6
MSTRG.178 Avicennia marina HOM05D004766 ORTHO05D006159 1.7e-78 296.6 250 64.4
Dinv26060 Davidia involucrata HOM05D004766 ORTHO05D006159 2.9e-78 295.8 250 63.2
Hma1.2p1_2838F.1_g329300 Hydrangea macrophylla HOM05D004766 ORTHO05D006159 1.9e-77 293.1 250 63.2
Oeu054426.2 Olea europaea HOM05D004766 ORTHO05D006159 1.6e-76 290.0 250 62.0
CiPaw.01G306100 Carya illinoinensis HOM05D004766 ORTHO05D006159 2.1e-76 289.7 250 59.6
Migut.F01258 Erythranthe guttata HOM05D004766 ORTHO05D006159 3.5e-76 288.9 249 61.8
SalBow5G3937 Salvia bowleyana HOM05D004766 ORTHO05D006159 7.9e-76 287.7 250 60.0
Lj8C56T7 Lonicera japonica HOM05D004766 ORTHO05D006159 1.0e-75 287.3 249 60.6
GSVIVG01032703001 Vitis vinifera HOM05D004766 ORTHO05D006159 1.0e-75 287.3 250 61.6
Eucgr.J00130 Eucalyptus grandis HOM05D004766 ORTHO05D006159 1.8e-75 286.6 250 60.8
arahy.Tifrunner.gnm1.ann1.4BS23W Arachis hypogaea HOM05D004766 ORTHO05D006159 3.9e-75 285.4 250 59.2
vmacro09973 Vaccinium macrocarpon HOM05D004766 ORTHO05D006159 5.1e-75 285.0 250 60.4
SGA_v2.0_scaffold275G46605 Striga asiatica HOM05D004766 ORTHO05D006159 8.7e-75 284.3 259 59.1
Ca_16870_v3 Cicer arietinum L. HOM05D004766 ORTHO05D006159 2.5e-74 282.7 250 58.8
Lalb_Chr11g0067831 Lupinus albus HOM05D004766 ORTHO05D006159 2.5e-74 282.7 250 59.2
arahy.Tifrunner.gnm1.ann1.GHXG56 Arachis hypogaea HOM05D004766 ORTHO05D006159 3.3e-74 282.3 250 58.8
Ciclev10033572m.g Citrus clementina HOM05D004766 ORTHO05D006159 3.3e-74 282.3 250 58.8
Rhsim09G0184400 Rhododendron simsii HOM05D004766 ORTHO05D006159 3.3e-74 282.3 250 60.0
QL08p064773 Quercus lobata HOM05D004766 ORTHO05D006159 4.3e-74 282.0 250 58.4
Glyma.06G143400 Glycine max HOM05D004766 ORTHO05D006159 5.6e-74 281.6 251 59.0
Atru.chr12.159 Acer truncatum HOM05D004766 ORTHO05D006159 7.4e-74 281.2 250 59.2
Prupe.2G263500 Prunus persica HOM05D004766 ORTHO05D006159 3.6e-73 278.9 250 60.4
Sabra19G0071700 Salix brachista HOM05D004766 ORTHO05D006159 4.8e-73 278.5 250 57.6
Ah.16g104280 Amaranthus hybridus HOM05D004766 ORTHO05D006159 1.8e-72 276.6 250 61.2
HanXRQChr08g0222571 Helianthus annuus HOM05D004766 ORTHO05D006159 2.4e-72 276.2 250 58.4
DCAR_010519 Daucus carota HOM05D004766 ORTHO05D006159 3.1e-72 275.8 249 58.6
Potri.019G056200 Populus trichocarpa HOM05D004766 ORTHO05D006159 3.1e-72 275.8 250 57.6
Lalb_Chr08g0239111 Lupinus albus HOM05D004766 ORTHO05D006159 4.0e-72 275.4 250 57.2
RcHm_v2.0_Chr1g0372121 Rosa chinensis HOM05D004766 ORTHO05D006159 4.0e-72 275.4 250 59.6
Manes.07G137600 Manihot esculenta HOM05D004766 ORTHO05D006159 5.3e-72 275.0 250 58.4
AUR62012360 Chenopodium quinoa HOM05D004766 ORTHO05D006159 6.9e-72 274.6 250 59.6
FvH4_7g25850 Fragaria vesca HOM05D004766 ORTHO05D006159 9.0e-72 274.2 250 60.0
FAN06G4224 Fragaria x ananassa HOM05D004766 ORTHO05D006159 9.0e-72 274.2 250 60.0
FAN10G2197 Fragaria x ananassa HOM05D004766 ORTHO05D006159 9.0e-72 274.2 250 60.0
EL10Ac2g04254 Beta vulgaris HOM05D004766 ORTHO05D006159 1.5e-71 273.5 250 59.6
FAN03G3241 Fragaria x ananassa HOM05D004766 ORTHO05D006159 1.5e-71 273.5 250 60.0
TAR636G0335 Trochodendron aralioides HOM05D004766 ORTHO05D006159 1.5e-71 273.5 250 58.0
Glyma.04G222000 Glycine max HOM05D004766 ORTHO05D006159 7.6e-71 271.2 250 57.6
Nn5g26881 Nelumbo nucifera HOM05D004766 ORTHO05D006159 7.6e-71 271.2 251 58.6
Cfa001212 Carpinus fangiana HOM05D004766 ORTHO05D006159 1.3e-70 270.4 250 56.4
Haze_17351 Corylus avellana HOM05D004766 ORTHO05D006159 1.3e-70 270.4 250 56.4
Thecc.10G183900 Theobroma cacao HOM05D004766 ORTHO05D006159 1.3e-70 270.4 250 57.2
CsaV3_6G002240 Cucumis sativus L. HOM05D004766 ORTHO05D006159 1.7e-70 270.0 250 57.6
MD07G1233000 Malus domestica HOM05D004766 ORTHO05D006159 1.7e-70 270.0 250 59.2
Nn2g10346 Nelumbo nucifera HOM05D004766 ORTHO05D006159 2.2e-70 269.6 250 57.2
VMungo1309G2839 Vigna mungo HOM05D004766 ORTHO05D006159 2.2e-70 269.6 257 57.2
Phvul.009G142700 Phaseolus vulgaris HOM05D004766 ORTHO05D006159 3.8e-70 268.9 250 57.2
MELO3C020001.2 Cucumis melo HOM05D004766 ORTHO05D006159 4.9e-70 268.5 250 57.2
MD01G1166300 Malus domestica HOM05D004766 ORTHO05D006159 6.4e-70 268.1 250 58.4
Sed0017451 Sechium edule HOM05D004766 ORTHO05D006159 6.4e-70 268.1 250 57.2
AUR62031489 Chenopodium quinoa HOM05D004766 ORTHO05D006159 8.4e-70 267.7 250 58.4
Hund13464 Selenicereus undatus HOM05D004766 ORTHO05D006159 1.1e-69 267.3 250 58.8
TPR.G16138 Trifolium pratense HOM05D004766 ORTHO05D006159 1.1e-69 267.3 250 56.0
Gohir.A13G007600 Gossypium hirsutum HOM05D004766 ORTHO05D006159 3.2e-69 265.8 250 56.4
TAR633G2654 Trochodendron aralioides HOM05D004766 ORTHO05D006159 7.1e-69 264.6 250 57.2
Gohir.D13G007700 Gossypium hirsutum HOM05D004766 ORTHO05D006159 9.3e-69 264.2 250 56.4
PGR142G0390 Punica granatum HOM05D004766 ORTHO05D006159 9.3e-69 264.2 249 57.0
Gorai.013G008100 Gossypium raimondii HOM05D004766 ORTHO05D006159 1.2e-68 263.8 250 56.4
ECA233G3027 Erigeron canadensis HOM05D004766 ORTHO05D006159 1.6e-68 263.5 250 58.8
TWI09G0270 Tripterygium wilfordii HOM05D004766 ORTHO05D006159 1.6e-68 263.5 250 57.6
Medtr3g094070 Medicago truncatula HOM05D004766 ORTHO05D006159 2.7e-68 262.7 250 56.8
THA.LOC104812375 Tarenaya hassleriana HOM05D004766 ORTHO05D006159 2.7e-68 262.7 250 56.4
Psat5g069120 Pisum sativum HOM05D004766 ORTHO05D006159 4.6e-68 261.9 250 54.0
PSO339G1431 Papaver somniferum HOM05D004766 ORTHO05D006159 7.9e-68 261.2 250 56.8
HanXRQChr17g0560771 Helianthus annuus HOM05D004766 ORTHO05D006159 1.3e-67 260.4 250 56.8
CSS0019433 Camellia sinensis var. sinensis HOM05D004766 ORTHO05D006159 1.8e-67 260.0 322 47.8
PSO384G4442 Papaver somniferum HOM05D004766 ORTHO05D006159 2.3e-67 259.6 250 56.8
Duzib128G1614 Durio zibethinus HOM05D004766 ORTHO05D006159 3.0e-67 259.2 250 56.4
Aa31LG10G11180 Aethionema arabicum HOM05D004766 ORTHO05D006159 3.9e-67 258.8 250 56.4
Aqoxy4G02363 Aquilegia oxysepala HOM05D004766 ORTHO05D006159 3.9e-67 258.8 250 56.0
CARHR135660 Cardamine hirsuta HOM05D004766 ORTHO05D006159 5.1e-67 258.5 250 54.8
Cpa.g.sc19.83 Carica papaya HOM05D004766 ORTHO05D006159 8.7e-67 257.7 250 55.6
BcaB06g29150 Brassica carinata HOM05D004766 ORTHO05D006159 7.4e-66 254.6 250 54.8
BcaC02g07319 Brassica carinata HOM05D004766 ORTHO05D006159 7.4e-66 254.6 250 54.8
C04p68390 Brassica napus HOM05D004766 ORTHO05D006159 7.4e-66 254.6 250 54.8
BolC4t28340H Brassica oleracea HOM05D000154 ORTHO05D000092 7.4e-66 254.6 250 54.8
Carub.0004s2277 Capsella rubella HOM05D004766 ORTHO05D006159 7.4e-66 254.6 250 55.6
A04p31000 Brassica napus HOM05D004766 ORTHO05D006159 9.6e-66 254.2 250 54.8
BraA04t18557Z Brassica rapa HOM05D000154 ORTHO05D000092 9.6e-66 254.2 250 54.8
Thhalv10016414m.g Eutrema salsugineum HOM05D004766 ORTHO05D006159 9.6e-66 254.2 250 54.0
Lsat_1_v5_gn_8_13521 Lactuca sativa HOM05D004766 ORTHO05D006159 9.6e-66 254.2 250 57.2
THA.LOC104803295 Tarenaya hassleriana HOM05D004766 ORTHO05D006159 1.3e-65 253.8 250 54.8
SHI28878 Sapria himalayana HOM05D004766 ORTHO05D006159 2.8e-65 252.7 250 54.4
AL4G38400 Arabidopsis lyrata HOM05D004766 ORTHO05D006159 3.7e-65 252.3 250 54.0
CANSAT56G1075 Cannabis sativa HOM05D004766 ORTHO05D006159 3.7e-65 252.3 250 55.6
MBI15_g35105_MAGBIO Magnolia biondii HOM05D004766 ORTHO05D006159 1.8e-64 250.0 252 53.2
AT2G40550 Arabidopsis thaliana HOM05D004766 ORTHO05D006159 4.0e-64 248.8 250 53.6
Sp4g22880 Schrenkiella parvula HOM05D004766 ORTHO05D006159 5.3e-64 248.4 249 53.8
SpUn0061_0030 Schrenkiella parvula HOM05D004766 ORTHO05D006159 5.3e-64 248.4 249 53.8
Lj1g0018162 Lotus japonicus HOM05D004766 ORTHO05D006159 4.2e-61 238.8 251 51.8
CDE12G0671 Ceratophyllum demersum HOM05D004766 ORTHO05D006159 2.7e-60 236.1 246 52.8
Hma1.2p1_2838F.1_g329290 Hydrangea macrophylla HOM05D004766 ORTHO05D006159 3.0e-59 232.6 192 63.5
unitig_90.g27573 Utricularia gibba HOM05D004766 ORTHO05D006159 1.1e-58 230.7 251 51.4
HPP92_018094 Vanilla planifolia HOM05D004766 ORTHO05D006159 2.5e-58 229.6 250 52.8
FAN01G2723 Fragaria x ananassa HOM05D004766 ORTHO05D006159 3.3e-58 229.2 201 60.2
ClCG11G005730 Citrullus lanatus HOM05D004766 ORTHO05D006159 9.6e-58 227.6 201 58.2
Actinidia31615 Actinidia chinensis HOM05D004766 ORTHO05D006159 1.3e-57 227.3 250 53.2
ATR0681G084 Amborella trichopoda HOM05D004766 ORTHO05D006159 2.8e-57 226.1 251 49.0
Sc10g0002920 Simmondsia chinensis HOM05D004766 ORTHO05D006159 1.1e-56 224.2 201 60.2
Os01g0166800 Oryza sativa ssp. japonica HOM05D004766 ORTHO05D006159 2.5e-53 213.0 247 46.2
COL.COLO4_19454 Corchorus olitorius HOM05D004766 ORTHO05D006159 7.2e-53 211.5 192 58.3
MD01G1183300 Malus domestica HOM05D004766 ORTHO05D006159 3.6e-52 209.1 245 53.1
C04p02090 Brassica napus HOM05D004766 ORTHO05D006159 2.3e-51 206.5 237 48.5
SEGI_19414 Sequoiadendron giganteum HOM05D004766 ORTHO05D006159 1.5e-50 203.8 251 46.6
Zm00001eb123270 Zea mays HOM05D004766 ORTHO05D006159 2.2e-49 199.9 247 43.7
Actinidia33880 Actinidia chinensis HOM05D004766 ORTHO05D006159 6.3e-41 171.8 197 50.3
Pp3c21_8640 Physcomitrium patens HOM05D004766 ORTHO05D006159 2.0e-39 166.8 253 40.3
AagrBONN_evm.TU.Sc2ySwM_228.256 Anthoceros agrestis HOM05D004766 ORTHO05D006159 3.4e-39 166.0 252 41.7
SMO347G0133 Selaginella moellendorffii HOM05D004766 ORTHO05D006159 6.5e-38 161.8 254 41.3
SalBow5G1700 Salvia bowleyana HOM05D004766 ORTHO05D006159 5.5e-37 158.7 242 41.7
BcaC02g12598 Brassica carinata HOM05D004766 ORTHO05D006159 1.0e-35 154.5 165 51.5
CSS0047727 Camellia sinensis var. sinensis HOM05D004766 ORTHO05D006159 2.3e-35 153.3 170 49.4
BcaC02g12723 Brassica carinata HOM05D000154 ORTHO05D000092 5.7e-34 148.7 192 45.8
Dinv21784 Davidia involucrata HOM05D004766 ORTHO05D006159 2.8e-33 146.4 108 68.5
Mapoly0030s0020 Marchantia polymorpha HOM05D004766 ORTHO05D006159 4.5e-31 139.0 253 35.6
SMO347G0333 Selaginella moellendorffii HOM05D004766 ORTHO05D006159 5.0e-30 135.6 255 38.8
CBR_g29836 Chara braunii HOM05D004766 ORTHO05D006159 7.5e-26 121.7 219 35.2
BolC4t21721H Brassica oleracea HOM05D004766 ORTHO05D006159 2.8e-25 119.8 121 51.2
A05p01790 Brassica napus HOM05D004766 ORTHO05D006159 1.1e-24 117.9 126 50.8
BraA05t19176Z Brassica rapa HOM05D004766 ORTHO05D006159 4.7e-20 102.4 114 50.0
MCO09G187 Micromonas commoda HOM05D004766 ORTHO05D006159 1.0e-19 101.3 254 32.3
Peaxi162Scf00041g01211 Petunia axillaris HOM05D004766 ORTHO05D006159 1.4e-16 90.9 93 54.8
BolC4t21857H Brassica oleracea HOM05D000154 ORTHO05D000092 2.7e-15 86.7 99 47.5
MBI11_g31297_MAGBIO Magnolia biondii HOM05D004766 ORTHO05D000022 2.3e-14 83.6 77 51.9
PRCOL_00003324 Prasinoderma coloniale HOM05D004766 ORTHO05D006159 6.3e-09 65.5 210 29.0
Nn1g07504 Nelumbo nucifera HOM05D004766 ORTHO05D006159 1.3e-06 57.8 43 60.5


User provided reference genes

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