Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc06g050180.3 Solanum lycopersicum HOM05D004766 ORTHO05D006159 1.5e-138 496.1 246 100.0
PGSC0003DMG400024309 Solanum tuberosum HOM05D004766 ORTHO05D006159 2.4e-91 339.3 291 64.3
Sopen06g015640 Solanum pennellii HOM05D000002 ORTHO05D000001 2.5e-72 276.2 201 70.1
Peaxi162Scf00739g00019 Petunia axillaris HOM05D004766 ORTHO05D006159 1.7e-68 263.5 241 58.9
Nitab4.5_0000109g0520 Nicotiana tabacum HOM05D004766 ORTHO05D006159 1.2e-66 257.3 291 51.5
CAN.G169.5 Capsicum annuum HOM05D004766 ORTHO05D006159 5.9e-66 255.0 291 51.5
Nitab4.5_0003695g0010 Nicotiana tabacum HOM05D004766 ORTHO05D006159 3.3e-64 249.2 291 50.9
Dinv26060 Davidia involucrata HOM05D004766 ORTHO05D006159 6.0e-50 201.8 290 44.1
QL08p064773 Quercus lobata HOM05D004766 ORTHO05D006159 6.6e-49 198.4 291 44.0
GSVIVG01032703001 Vitis vinifera HOM05D004766 ORTHO05D006159 1.9e-48 196.8 285 42.1
CSS0019433 Camellia sinensis var. sinensis HOM05D004766 ORTHO05D006159 2.5e-48 196.4 293 42.7
Dinv21831 Davidia involucrata HOM05D004766 ORTHO05D006159 2.5e-48 196.4 292 42.5
Gohir.D13G007700 Gossypium hirsutum HOM05D004766 ORTHO05D006159 2.1e-47 193.4 291 43.3
Gorai.013G008100 Gossypium raimondii HOM05D004766 ORTHO05D006159 2.1e-47 193.4 291 43.3
Cc02_g05520 Coffea canephora HOM05D004766 ORTHO05D006159 2.8e-47 193.0 283 42.0
Hma1.2p1_2838F.1_g329290 Hydrangea macrophylla HOM05D004766 ORTHO05D006159 2.8e-47 193.0 273 42.9
Gohir.A13G007600 Gossypium hirsutum HOM05D004766 ORTHO05D006159 4.7e-47 192.2 290 42.8
Actinidia31615 Actinidia chinensis HOM05D004766 ORTHO05D006159 1.1e-46 191.0 287 40.8
Migut.F01258 Erythranthe guttata HOM05D004766 ORTHO05D006159 1.1e-46 191.0 290 41.4
Lj8C56T7 Lonicera japonica HOM05D004766 ORTHO05D006159 1.1e-46 191.0 290 42.4
Prupe.2G263500 Prunus persica HOM05D004766 ORTHO05D006159 8.9e-46 188.0 280 42.1
Actinidia29749 Actinidia chinensis HOM05D004766 ORTHO05D006159 4.4e-45 185.7 285 40.0
Cpa.g.sc19.83 Carica papaya HOM05D004766 ORTHO05D006159 4.4e-45 185.7 286 39.9
Actinidia33880 Actinidia chinensis HOM05D004766 ORTHO05D006159 5.8e-45 185.3 288 39.9
MSTRG.178 Avicennia marina HOM05D004766 ORTHO05D006159 7.5e-45 184.9 289 39.4
Haze_17351 Corylus avellana HOM05D004766 ORTHO05D006159 2.2e-44 183.3 309 38.8
MD07G1233000 Malus domestica HOM05D004766 ORTHO05D006159 2.2e-44 183.3 284 41.2
Oeu054426.2 Olea europaea HOM05D004766 ORTHO05D006159 2.9e-44 183.0 359 35.7
Duzib128G1614 Durio zibethinus HOM05D004766 ORTHO05D006159 4.9e-44 182.2 290 41.4
Ciclev10033572m.g Citrus clementina HOM05D004766 ORTHO05D006159 2.4e-43 179.9 288 41.3
Potri.019G056200 Populus trichocarpa HOM05D004766 ORTHO05D006159 3.2e-43 179.5 283 40.6
Atru.chr12.159 Acer truncatum HOM05D004766 ORTHO05D006159 4.1e-43 179.1 293 41.3
CANSAT56G1075 Cannabis sativa HOM05D004766 ORTHO05D006159 5.4e-43 178.7 289 41.2
Sabra19G0071700 Salix brachista HOM05D004766 ORTHO05D006159 5.4e-43 178.7 275 41.8
Rhsim09G0184400 Rhododendron simsii HOM05D004766 ORTHO05D006159 9.2e-43 177.9 293 40.6
SGA_v2.0_scaffold275G46605 Striga asiatica HOM05D004766 ORTHO05D006159 9.2e-43 177.9 285 36.5
AUR62031489 Chenopodium quinoa HOM05D004766 ORTHO05D006159 1.6e-42 177.2 283 41.0
EL10Ac2g04254 Beta vulgaris HOM05D004766 ORTHO05D006159 2.7e-42 176.4 287 40.4
MBI15_g35105_MAGBIO Magnolia biondii HOM05D004766 ORTHO05D006159 2.7e-42 176.4 285 39.3
MELO3C020001.2 Cucumis melo HOM05D004766 ORTHO05D006159 3.5e-42 176.0 282 40.4
ECA233G3027 Erigeron canadensis HOM05D004766 ORTHO05D006159 6.0e-42 175.3 282 39.0
TAR636G1150 Trochodendron aralioides HOM05D004766 ORTHO05D006159 1.0e-41 174.5 288 38.9
Thecc.10G183900 Theobroma cacao HOM05D004766 ORTHO05D006159 2.3e-41 173.3 288 39.9
TWI09G0270 Tripterygium wilfordii HOM05D004766 ORTHO05D006159 2.3e-41 173.3 285 39.3
Manes.07G137600 Manihot esculenta HOM05D004766 ORTHO05D006159 3.0e-41 172.9 288 39.6
vmacro09973 Vaccinium macrocarpon HOM05D004766 ORTHO05D006159 3.9e-41 172.6 318 37.4
ClCG11G005730 Citrullus lanatus HOM05D004766 ORTHO05D006159 5.1e-41 172.2 284 39.1
FAN03G3241 Fragaria x ananassa HOM05D004766 ORTHO05D006159 5.1e-41 172.2 286 39.2
FvH4_7g25850 Fragaria vesca HOM05D004766 ORTHO05D006159 6.6e-41 171.8 286 39.5
Lsat_1_v5_gn_8_13521 Lactuca sativa HOM05D004766 ORTHO05D006159 8.6e-41 171.4 279 40.5
Sc10g0002920 Simmondsia chinensis HOM05D004766 ORTHO05D006159 1.1e-40 171.0 286 38.5
THA.LOC104812375 Tarenaya hassleriana HOM05D004766 ORTHO05D006159 1.9e-40 170.2 286 39.9
Ah.16g104280 Amaranthus hybridus HOM05D004766 ORTHO05D006159 2.5e-40 169.9 286 39.5
arahy.Tifrunner.gnm1.ann1.GHXG56 Arachis hypogaea HOM05D004766 ORTHO05D006159 2.5e-40 169.9 286 40.6
FAN06G4224 Fragaria x ananassa HOM05D004766 ORTHO05D006159 2.5e-40 169.9 286 39.2
SalBow5G3937 Salvia bowleyana HOM05D004766 ORTHO05D006159 2.5e-40 169.9 288 38.5
Ca_16870_v3 Cicer arietinum L. HOM05D004766 ORTHO05D006159 3.3e-40 169.5 286 38.8
arahy.Tifrunner.gnm1.ann1.4BS23W Arachis hypogaea HOM05D004766 ORTHO05D006159 4.3e-40 169.1 286 40.2
FAN10G2197 Fragaria x ananassa HOM05D004766 ORTHO05D006159 4.3e-40 169.1 286 38.5
CsaV3_6G002240 Cucumis sativus L. HOM05D004766 ORTHO05D006159 1.2e-39 167.5 282 39.4
Lalb_Chr11g0067831 Lupinus albus HOM05D004766 ORTHO05D006159 1.6e-39 167.2 289 40.8
CiPaw.01G306100 Carya illinoinensis HOM05D004766 ORTHO05D006159 2.1e-39 166.8 288 39.2
RcHm_v2.0_Chr1g0372121 Rosa chinensis HOM05D004766 ORTHO05D006159 2.1e-39 166.8 286 38.1
FAN01G2723 Fragaria x ananassa HOM05D004766 ORTHO05D006159 2.8e-39 166.4 279 38.0
Eucgr.J00130 Eucalyptus grandis HOM05D004766 ORTHO05D006159 4.7e-39 165.6 289 37.0
Nn2g10346 Nelumbo nucifera HOM05D004766 ORTHO05D006159 6.2e-39 165.2 286 37.4
Nn5g26881 Nelumbo nucifera HOM05D004766 ORTHO05D006159 1.8e-38 163.7 288 37.2
Hund13464 Selenicereus undatus HOM05D004766 ORTHO05D006159 1.8e-38 163.7 291 38.8
THA.LOC104803295 Tarenaya hassleriana HOM05D004766 ORTHO05D006159 3.1e-38 162.9 278 38.8
TPR.G16138 Trifolium pratense HOM05D004766 ORTHO05D006159 3.1e-38 162.9 306 36.3
Glyma.04G222000 Glycine max HOM05D004766 ORTHO05D006159 6.8e-38 161.8 289 38.8
Psat5g069120 Pisum sativum HOM05D004766 ORTHO05D006159 6.8e-38 161.8 294 38.1
Aa31LG10G11180 Aethionema arabicum HOM05D004766 ORTHO05D006159 8.9e-38 161.4 285 37.9
Sed0017451 Sechium edule HOM05D004766 ORTHO05D006159 8.9e-38 161.4 271 38.7
HanXRQChr08g0222571 Helianthus annuus HOM05D004766 ORTHO05D006159 1.5e-37 160.6 279 38.7
HanXRQChr17g0560771 Helianthus annuus HOM05D004766 ORTHO05D006159 1.5e-37 160.6 281 36.7
Medtr3g094070 Medicago truncatula HOM05D004766 ORTHO05D006159 1.5e-37 160.6 286 37.4
PSO384G4442 Papaver somniferum HOM05D004766 ORTHO05D006159 1.5e-37 160.6 297 35.7
Aqoxy4G02363 Aquilegia oxysepala HOM05D004766 ORTHO05D006159 4.4e-37 159.1 288 35.4
PGR142G0390 Punica granatum HOM05D004766 ORTHO05D006159 5.8e-37 158.7 289 37.0
Phvul.009G142700 Phaseolus vulgaris HOM05D004766 ORTHO05D006159 8.4e-36 154.8 286 38.1
Carub.0004s2277 Capsella rubella HOM05D004766 ORTHO05D006159 1.1e-35 154.5 282 37.9
CARHR135660 Cardamine hirsuta HOM05D004766 ORTHO05D006159 1.4e-35 154.1 284 36.6
Glyma.06G143400 Glycine max HOM05D004766 ORTHO05D006159 1.4e-35 154.1 287 37.6
PSO339G1431 Papaver somniferum HOM05D004766 ORTHO05D006159 1.4e-35 154.1 297 35.4
BcaB06g29150 Brassica carinata HOM05D004766 ORTHO05D006159 2.4e-35 153.3 285 37.5
AL4G38400 Arabidopsis lyrata HOM05D004766 ORTHO05D006159 3.2e-35 152.9 264 40.2
AT2G40550 Arabidopsis thaliana HOM05D004766 ORTHO05D006159 3.2e-35 152.9 280 38.6
Thhalv10016414m.g Eutrema salsugineum HOM05D004766 ORTHO05D006159 5.4e-35 152.1 285 37.2
Sp4g22880 Schrenkiella parvula HOM05D004766 ORTHO05D006159 5.4e-35 152.1 291 38.8
SpUn0061_0030 Schrenkiella parvula HOM05D004766 ORTHO05D006159 5.4e-35 152.1 291 38.8
DCAR_010519 Daucus carota HOM05D004766 ORTHO05D006159 7.1e-35 151.8 290 35.2
BcaC02g07319 Brassica carinata HOM05D004766 ORTHO05D006159 4.6e-34 149.1 289 37.0
C04p68390 Brassica napus HOM05D004766 ORTHO05D006159 6.0e-34 148.7 289 37.0
TAR633G2654 Trochodendron aralioides HOM05D004766 ORTHO05D006159 6.0e-34 148.7 292 35.6
ATR0681G084 Amborella trichopoda HOM05D004766 ORTHO05D006159 7.8e-34 148.3 287 35.5
A04p31000 Brassica napus HOM05D004766 ORTHO05D006159 7.8e-34 148.3 266 37.2
AUR62012360 Chenopodium quinoa HOM05D004766 ORTHO05D006159 7.8e-34 148.3 288 36.8
Lj1g0018162 Lotus japonicus HOM05D004766 ORTHO05D006159 2.3e-33 146.7 254 40.9
COL.COLO4_19454 Corchorus olitorius HOM05D004766 ORTHO05D006159 8.6e-33 144.8 208 42.8
VMungo1309G2839 Vigna mungo HOM05D004766 ORTHO05D006159 8.6e-33 144.8 288 36.5
Os01g0166800 Oryza sativa ssp. japonica HOM05D004766 ORTHO05D006159 2.1e-31 140.2 293 33.8
unitig_90.g27573 Utricularia gibba HOM05D004766 ORTHO05D006159 3.6e-31 139.4 207 40.1
Lalb_Chr08g0239111 Lupinus albus HOM05D004766 ORTHO05D006159 8.1e-31 138.3 291 36.4
Zm00001eb123270 Zea mays HOM05D004766 ORTHO05D006159 3.4e-29 132.9 288 33.7
Cfa001212 Carpinus fangiana HOM05D004766 ORTHO05D006159 1.3e-28 131.0 194 41.8
HPP92_018094 Vanilla planifolia HOM05D004766 ORTHO05D006159 6.4e-28 128.6 294 33.3
SEGI_19414 Sequoiadendron giganteum HOM05D004766 ORTHO05D006159 1.1e-27 127.9 287 30.3
BolC4t28340H Brassica oleracea HOM05D000154 ORTHO05D000092 3.2e-27 126.3 219 38.4
BraA04t18557Z Brassica rapa HOM05D000154 ORTHO05D000092 4.2e-27 125.9 196 39.3
C04p02090 Brassica napus HOM05D004766 ORTHO05D006159 3.0e-25 119.8 193 40.4
MD01G1166000 Malus domestica HOM05D004766 ORTHO05D006159 8.7e-25 118.2 133 48.1
SMO347G0133 Selaginella moellendorffii HOM05D004766 ORTHO05D006159 2.4e-19 100.1 260 30.8
Mapoly0030s0020 Marchantia polymorpha HOM05D004766 ORTHO05D006159 3.2e-19 99.8 267 27.3
AagrBONN_evm.TU.Sc2ySwM_228.256 Anthoceros agrestis HOM05D004766 ORTHO05D006159 7.1e-19 98.6 223 30.9
SMO347G0333 Selaginella moellendorffii HOM05D004766 ORTHO05D006159 9.3e-19 98.2 256 30.9
Pp3c21_8640 Physcomitrium patens HOM05D004766 ORTHO05D006159 2.7e-18 96.7 293 28.0
CDE12G0671 Ceratophyllum demersum HOM05D004766 ORTHO05D006159 1.0e-17 94.7 249 32.1
HanXRQChr02g0033011 Helianthus annuus HOM05D004766 ORTHO05D006159 3.9e-17 92.8 133 39.8
SHI28879 Sapria himalayana HOM05D004766 ORTHO05D006159 1.1e-16 91.3 76 55.3
AagrBONN_evm.TU.Sc2ySwM_228.73 Anthoceros agrestis HOM05D004766 ORTHO05D006159 7.6e-13 78.6 132 34.8
MCO09G187 Micromonas commoda HOM05D004766 ORTHO05D006159 1.2e-10 71.2 123 35.0
CBR_g29836 Chara braunii HOM05D004766 ORTHO05D006159 1.9e-08 63.9 263 25.5
Hma1.2p1_2838F.1_g329300 Hydrangea macrophylla HOM05D004766 ORTHO05D006159 4.3e-08 62.8 55 56.4
MD01G1166300 Malus domestica HOM05D004766 ORTHO05D006159 4.3e-08 62.8 134 32.1
CSS0047727 Camellia sinensis var. sinensis HOM05D004766 ORTHO05D006159 3.1e-06 56.6 55 52.7
HanXRQChr03g0064211 Helianthus annuus HOM05D004766 ORTHO05D006159 5.3e-06 55.8 95 37.9
Dinv21784 Davidia involucrata HOM05D004766 ORTHO05D006159 6.9e-06 55.5 96 42.7


User provided reference genes

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