Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc06g049090.3 Solanum lycopersicum HOM05D006829 ORTHO05D008742 7.4e-118 427.2 209 100.0
Sopen06g015460 Solanum pennellii HOM05D006829 ORTHO05D008742 4.1e-100 368.2 220 85.5
Peaxi162Scf00739g00214 Petunia axillaris HOM05D006829 ORTHO05D008742 9.4e-89 330.5 200 83.5
Nitab4.5_0004599g0030 Nicotiana tabacum HOM05D006829 ORTHO05D008742 1.2e-88 330.1 220 76.4
Nitab4.5_0001743g0020 Nicotiana tabacum HOM05D006829 ORTHO05D008742 2.1e-88 329.3 209 80.4
PGSC0003DMG401016632 Solanum tuberosum HOM05D006829 ORTHO05D008742 3.9e-74 282.0 178 81.5
Cc02_g05470 Coffea canephora HOM05D006829 ORTHO05D008742 2.2e-69 266.2 215 60.5
Oeu004091.1 Olea europaea HOM05D006829 ORTHO05D008742 4.9e-69 265.0 211 64.0
Dinv21837 Davidia involucrata HOM05D006829 ORTHO05D008742 5.4e-68 261.5 212 60.4
GSVIVG01032697001 Vitis vinifera HOM05D006829 ORTHO05D008742 9.2e-68 260.8 212 60.4
Potri.013G093500 Populus trichocarpa HOM05D006829 ORTHO05D008742 2.3e-66 256.1 211 58.3
Haze_17346 Corylus avellana HOM05D006829 ORTHO05D008742 5.0e-66 255.0 216 58.3
Cfa001217 Carpinus fangiana HOM05D006829 ORTHO05D008742 1.5e-65 253.4 214 58.9
MD01G1164900 Malus domestica HOM05D006829 ORTHO05D008742 4.3e-65 251.9 212 58.0
Lsat_1_v5_gn_2_125021 Lactuca sativa HOM05D006829 ORTHO05D008742 7.3e-65 251.1 211 60.7
Cfa001216 Carpinus fangiana HOM05D006829 ORTHO05D008742 9.5e-65 250.8 214 58.4
Migut.F00600 Erythranthe guttata HOM05D006829 ORTHO05D008742 1.2e-64 250.4 215 59.5
ECA238G4606 Erigeron canadensis HOM05D000486 ORTHO05D008742 2.8e-64 249.2 211 59.2
PSO017G4996 Papaver somniferum HOM05D006829 ORTHO05D008742 2.8e-64 249.2 214 58.4
Gorai.009G293000 Gossypium raimondii HOM05D006829 ORTHO05D008742 4.7e-64 248.4 211 58.3
Thecc.10G183200 Theobroma cacao HOM05D006829 ORTHO05D008742 4.7e-64 248.4 212 57.1
Duzib114G0477 Durio zibethinus HOM05D006829 ORTHO05D008742 6.2e-64 248.1 210 57.6
PGR142G2558 Punica granatum HOM05D006829 ORTHO05D008742 8.0e-64 247.7 212 59.4
Gohir.A05G277900 Gossypium hirsutum HOM05D006829 ORTHO05D008742 1.1e-63 247.3 211 58.3
Lj1g0006364 Lotus japonicus HOM05D006829 ORTHO05D008742 1.8e-63 246.5 217 55.8
MD07G1232400 Malus domestica HOM05D006829 ORTHO05D008742 1.8e-63 246.5 214 57.0
Manes.07G140300 Manihot esculenta HOM05D006829 ORTHO05D008742 2.3e-63 246.1 216 56.5
ClCG07G005040 Citrullus lanatus HOM05D006829 ORTHO05D008742 3.1e-63 245.7 213 55.9
Lj1A965T44 Lonicera japonica HOM05D006829 ORTHO05D008742 3.1e-63 245.7 228 55.7
Sed0019807 Sechium edule HOM05D006829 ORTHO05D008742 4.0e-63 245.4 220 55.5
VMungo1309G2158 Vigna mungo HOM05D006829 ORTHO05D008742 5.2e-63 245.0 213 55.9
Glyma.06G144200 Glycine max HOM05D006829 ORTHO05D008742 6.8e-63 244.6 212 56.6
Cpa.g.sc19.69 Carica papaya HOM05D006829 ORTHO05D008742 8.9e-63 244.2 211 57.3
Hund15829 Selenicereus undatus HOM05D006829 ORTHO05D008742 8.9e-63 244.2 212 57.5
Ca_16876_v3 Cicer arietinum L. HOM05D006829 ORTHO05D008742 1.2e-62 243.8 214 54.7
arahy.Tifrunner.gnm1.ann1.ST33QA Arachis hypogaea HOM05D006829 ORTHO05D008742 2.6e-62 242.7 212 55.7
HanXRQChr07g0203671 Helianthus annuus HOM05D006829 ORTHO05D008742 3.4e-62 242.3 212 57.5
MELO3C020140.2 Cucumis melo HOM05D006829 ORTHO05D008742 4.4e-62 241.9 212 56.6
TWI53G0389 Tripterygium wilfordii HOM05D006829 ORTHO05D008742 4.4e-62 241.9 212 58.5
Phvul.009G142000 Phaseolus vulgaris HOM05D006829 ORTHO05D008742 5.8e-62 241.5 214 54.7
RcHm_v2.0_Chr1g0371991 Rosa chinensis HOM05D006829 ORTHO05D008742 1.3e-61 240.4 212 55.2
CsaV3_5G010870 Cucumis sativus L. HOM05D006829 ORTHO05D008742 2.2e-61 239.6 208 55.3
Nn5g26868 Nelumbo nucifera HOM05D006829 ORTHO05D008742 2.2e-61 239.6 211 57.8
Lalb_Chr11g0067871 Lupinus albus HOM05D006829 ORTHO05D008742 2.9e-61 239.2 215 55.3
CSS0026526 Camellia sinensis var. sinensis HOM05D006829 ORTHO05D008742 3.7e-61 238.8 210 56.7
Psat5g068000 Pisum sativum HOM05D006829 ORTHO05D008742 8.3e-61 237.7 210 56.2
FAN06G1082 Fragaria x ananassa HOM05D006829 ORTHO05D008742 1.4e-60 236.9 212 54.7
QL08p064642 Quercus lobata HOM05D006829 ORTHO05D008742 1.9e-60 236.5 212 55.2
unitig_37.g12471 Utricularia gibba HOM05D006829 ORTHO05D002567 2.4e-60 236.1 216 55.1
Medtr3g094190 Medicago truncatula HOM05D006829 ORTHO05D008742 3.2e-60 235.7 210 55.2
Aqoxy4G02381_Aqoxy4G02382 Aquilegia oxysepala HOM05D006829 ORTHO05D008742 5.4e-60 235.0 214 56.1
AUR62030629 Chenopodium quinoa HOM05D006829 ORTHO05D008742 1.6e-59 233.4 215 53.5
Aa31LG10G11220 Aethionema arabicum HOM05D006829 ORTHO05D008742 2.7e-59 232.6 209 56.5
AUR62024915 Chenopodium quinoa HOM05D006829 ORTHO05D008742 3.5e-59 232.3 216 53.2
vmacro06881 Vaccinium macrocarpon HOM05D006829 ORTHO05D008742 3.5e-59 232.3 235 51.1
Actinidia33875 Actinidia chinensis HOM05D006829 ORTHO05D008742 6.0e-59 231.5 211 56.9
ATR1127G148 Amborella trichopoda HOM05D006829 ORTHO05D008742 1.0e-58 230.7 211 52.1
Sp5g06170 Schrenkiella parvula HOM05D006829 ORTHO05D008742 1.0e-58 230.7 213 54.5
TAR636G3228 Trochodendron aralioides HOM05D006829 ORTHO05D008742 1.0e-58 230.7 198 58.6
Carub.0005s2311 Capsella rubella HOM05D006829 ORTHO05D008742 2.3e-58 229.6 208 55.3
CDE06G0932 Ceratophyllum demersum HOM05D006829 ORTHO05D008742 2.3e-58 229.6 215 53.0
AL5G37660 Arabidopsis lyrata HOM05D006829 ORTHO05D008742 3.0e-58 229.2 208 55.3
FAN10G0089 Fragaria x ananassa HOM05D006829 ORTHO05D008742 3.9e-58 228.8 212 54.2
FAN10G3521 Fragaria x ananassa HOM05D006829 ORTHO05D008742 3.9e-58 228.8 212 54.2
AT3G56330 Arabidopsis thaliana HOM05D006829 ORTHO05D008742 5.1e-58 228.4 209 55.5
Rhsim03G0151300 Rhododendron simsii HOM05D006829 ORTHO05D008742 8.6e-58 227.6 213 53.1
Sabra13G0080500 Salix brachista HOM05D006829 ORTHO05D008742 2.5e-57 226.1 256 46.9
FAN01G1374 Fragaria x ananassa HOM05D006829 ORTHO05D008742 5.6e-57 224.9 229 50.7
CARHR166480 Cardamine hirsuta HOM05D006829 ORTHO05D008742 9.5e-57 224.2 208 55.3
THA.LOC104824240 Tarenaya hassleriana HOM05D006829 ORTHO05D008742 1.2e-56 223.8 210 56.2
A09p49290 Brassica napus HOM05D006829 ORTHO05D008742 3.6e-56 222.2 208 53.8
BraA09t40382Z Brassica rapa HOM05D006829 ORTHO05D008742 3.6e-56 222.2 208 53.8
C08p31650 Brassica napus HOM05D006829 ORTHO05D008742 1.8e-55 219.9 215 53.0
BolC8t50786H Brassica oleracea HOM05D006829 ORTHO05D008742 1.8e-55 219.9 215 53.0
Eucgr.G03130 Eucalyptus grandis HOM05D006829 ORTHO05D008742 5.2e-55 218.4 190 56.8
FAN03G2028 Fragaria x ananassa HOM05D006829 ORTHO05D008742 8.9e-55 217.6 245 46.9
CiPaw.01G305500 Carya illinoinensis HOM05D006829 ORTHO05D008742 2.0e-54 216.5 179 58.7
Thhalv10005995m.g Eutrema salsugineum HOM05D006829 ORTHO05D008742 2.6e-54 216.1 213 51.6
TPR.G16111 Trifolium pratense HOM05D006829 ORTHO05D008742 4.4e-54 215.3 215 51.6
HPP92_013832 Vanilla planifolia HOM05D006829 ORTHO05D008742 4.4e-54 215.3 212 51.9
Zm00001eb285100 Zea mays HOM05D006829 ORTHO05D008742 4.1e-52 208.8 214 47.2
DCAR_014591 Daucus carota HOM05D006829 ORTHO05D000064 1.7e-50 203.4 183 55.7
MBI03_g27103_MAGBIO Magnolia biondii HOM05D006829 ORTHO05D008742 1.7e-50 203.4 180 56.7
COL.COLO4_19445 Corchorus olitorius HOM05D006829 ORTHO05D008742 3.9e-50 202.2 180 54.4
arahy.Tifrunner.gnm1.ann1.1M00W9 Arachis hypogaea HOM05D006829 ORTHO05D008742 3.3e-49 199.1 179 54.2
Oeu004092.1 Olea europaea HOM05D006829 ORTHO05D008742 3.6e-48 195.7 158 63.3
Ciclev10031828m.g Citrus clementina HOM05D006829 ORTHO05D008742 1.6e-43 180.3 159 56.6
Mapoly0122s0019 Marchantia polymorpha HOM05D006829 ORTHO05D008742 3.0e-42 176.0 225 41.3
Pp3c22_6520 Physcomitrium patens HOM05D006829 ORTHO05D008742 1.1e-41 174.1 221 43.0
FvH4_7g25740 Fragaria vesca HOM05D006829 ORTHO05D008742 2.5e-41 172.9 159 54.1
EL10Ac2g02623 Beta vulgaris HOM05D006829 ORTHO05D008742 2.4e-36 156.4 114 60.5
SEGI_12327 Sequoiadendron giganteum HOM05D006829 ORTHO05D008742 2.4e-36 156.4 184 47.3
GSVIVG01022677001 Vitis vinifera HOM05D006829 ORTHO05D008742 3.9e-34 149.1 105 63.8
SMO246G0016 Selaginella moellendorffii HOM05D006829 ORTHO05D008742 3.3e-33 146.0 215 36.7
GSVIVG01035159001 Vitis vinifera HOM05D006829 ORTHO05D008742 2.4e-31 139.8 97 64.9
CBR_g8316 Chara braunii HOM05D000601 ORTHO05D000407 5.3e-31 138.7 224 33.5
GSVIVG01020332001 Vitis vinifera HOM05D006829 ORTHO05D008742 5.3e-31 138.7 97 64.9
GSVIVG01027259001 Vitis vinifera HOM05D006829 ORTHO05D008742 5.3e-31 138.7 97 64.9
GSVIVG01035137001 Vitis vinifera HOM05D006829 ORTHO05D008742 5.3e-31 138.7 97 64.9
CAN.G24.7 Capsicum annuum HOM05D006829 ORTHO05D008742 5.8e-30 135.2 112 67.0
Gohir.D05G279500 Gossypium hirsutum HOM05D006829 ORTHO05D008742 5.1e-26 122.1 122 54.1
Cre10.g428100 Chlamydomonas reinhardtii HOM05D006829 ORTHO05D008742 1.1e-25 120.9 275 28.0
Os05g0324100 Oryza sativa ssp. japonica HOM05D006829 ORTHO05D008742 9.0e-23 111.3 95 54.7
Gohir.D05G279550 Gossypium hirsutum HOM05D006829 ORTHO05D008742 1.6e-19 100.5 70 62.9
MD01G1165000 Malus domestica HOM05D006829 ORTHO05D008742 7.9e-19 98.2 53 83.0
Prupe.2G262600 Prunus persica HOM05D006829 ORTHO05D008742 7.9e-19 98.2 53 83.0
Atru.chr12.167 Acer truncatum HOM05D006829 ORTHO05D008742 3.0e-18 96.3 52 82.7
Sc14g0005620 Simmondsia chinensis HOM05D006829 ORTHO05D008742 3.0e-18 96.3 55 78.2
MCO02G392 Micromonas commoda HOM05D006829 ORTHO05D008742 6.7e-18 95.1 225 28.4
Lj4g0017249 Lotus japonicus HOM05D006829 ORTHO05D008742 1.2e-14 84.3 56 67.9
Phvul.001G070300 Phaseolus vulgaris HOM05D006997 ORTHO05D008713 6.7e-10 68.6 54 57.4
arahy.Tifrunner.gnm1.ann1.QBCT0C Arachis hypogaea HOM05D000342 ORTHO05D000217 8.7e-10 68.2 38 73.7
PRCOL_00004084 Prasinoderma coloniale HOM05D006829 ORTHO05D008742 3.1e-07 59.7 117 26.5
Cre10.g422000 Chlamydomonas reinhardtii HOM05D003582 ORTHO05D004789 2.6e-06 56.6 112 27.7
TAR629G1978 Trochodendron aralioides HOM05D003582 ORTHO05D004789 1.0e-05 54.7 205 22.4


User provided reference genes

Program Settings