Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc06g042950.3 Solanum lycopersicum HOM05D004065 ORTHO05D004806 0.0e+00 1256.1 640 100.0
Sopen06g010560 Solanum pennellii HOM05D004065 ORTHO05D004806 0.0e+00 1235.7 633 99.5
Peaxi162Scf00658g00731 Petunia axillaris HOM05D004065 ORTHO05D004806 1.4e-305 1052.4 609 89.7
Nitab4.5_0001836g0030 Nicotiana tabacum HOM05D004065 ORTHO05D004806 2.2e-301 1038.5 565 93.8
Nitab4.5_0005137g0020 Nicotiana tabacum HOM05D004065 ORTHO05D004806 8.8e-271 936.8 517 92.8
Cc02_g08160 Coffea canephora HOM05D004065 ORTHO05D004806 2.3e-263 912.1 634 75.1
CSS0036524 Camellia sinensis var. sinensis HOM05D004065 ORTHO05D004806 7.0e-260 900.6 636 73.7
Dinv31435 Davidia involucrata HOM05D004065 ORTHO05D004806 2.8e-256 888.6 636 72.6
Dinv25990 Davidia involucrata HOM05D004065 ORTHO05D004806 1.0e-255 886.7 636 73.3
HanXRQChr07g0201231 Helianthus annuus HOM05D004065 ORTHO05D004806 1.2e-251 873.2 635 71.2
Hma1.2p1_0727F.1_g209200 Hydrangea macrophylla HOM05D004065 ORTHO05D004806 2.9e-250 868.6 635 72.1
Lsat_1_v5_gn_2_117761 Lactuca sativa HOM05D004065 ORTHO05D004806 5.6e-249 864.4 639 70.7
ECA238G1619 Erigeron canadensis HOM05D004065 ORTHO05D004806 1.4e-247 859.8 635 70.4
MSTRG.8235 Avicennia marina HOM05D004065 ORTHO05D004806 6.8e-247 857.4 632 71.8
SGA_v2.0_scaffold2G00996 Striga asiatica HOM05D004065 ORTHO05D004806 7.0e-244 847.4 635 71.2
Thecc.10G046900 Theobroma cacao HOM05D004065 ORTHO05D004806 3.0e-242 842.0 637 69.7
Migut.F01518 Erythranthe guttata HOM05D004065 ORTHO05D004806 9.5e-241 837.0 610 71.8
SalBow6G0580 Salvia bowleyana HOM05D004065 ORTHO05D004806 7.5e-238 827.4 661 67.5
Rhsim09G0164300 Rhododendron simsii HOM05D004065 ORTHO05D004806 3.7e-237 825.1 700 65.0
Atru.chr12.508 Acer truncatum HOM05D004065 ORTHO05D004806 6.4e-237 824.3 667 66.6
Gorai.012G069700 Gossypium raimondii HOM05D004065 ORTHO05D004806 5.4e-236 821.2 636 67.1
Ciclev10030542m.g Citrus clementina HOM05D004065 ORTHO05D004806 2.7e-235 818.9 637 68.8
GSVIVG01016585001 Vitis vinifera HOM05D004065 ORTHO05D004806 4.6e-235 818.1 637 68.3
Duzib114G0580 Durio zibethinus HOM05D004065 ORTHO05D004806 6.0e-235 817.8 637 68.0
Gohir.D04G062400 Gossypium hirsutum HOM05D004065 ORTHO05D004806 2.3e-234 815.8 636 66.7
Prupe.2G231600 Prunus persica HOM05D004065 ORTHO05D004806 2.3e-234 815.8 635 67.4
Potri.008G052700 Populus trichocarpa HOM05D004065 ORTHO05D004806 1.5e-233 813.1 640 66.4
Potri.010G207900 Populus trichocarpa HOM05D004065 ORTHO05D004806 2.5e-233 812.4 640 66.9
TAR633G2080 Trochodendron aralioides HOM05D004065 ORTHO05D004806 4.3e-233 811.6 637 67.0
TWI38G1478 Tripterygium wilfordii HOM05D004065 ORTHO05D004806 1.2e-232 810.1 637 67.2
Duzib106G1820 Durio zibethinus HOM05D004065 ORTHO05D004806 6.8e-231 804.3 637 66.7
Cfa001505 Carpinus fangiana HOM05D004065 ORTHO05D004806 8.9e-231 803.9 634 67.4
MD07G1194200 Malus domestica HOM05D004065 ORTHO05D004806 2.6e-230 802.4 633 66.5
Manes.10G033000 Manihot esculenta HOM05D004065 ORTHO05D004806 2.6e-230 802.4 637 67.2
Eucgr.G02920 Eucalyptus grandis HOM05D004065 ORTHO05D004806 4.4e-230 801.6 634 66.9
TWI15G0503 Tripterygium wilfordii HOM05D004065 ORTHO05D004806 5.8e-230 801.2 637 66.7
Oeu016023.5 Olea europaea HOM05D004065 ORTHO05D004806 7.5e-230 800.8 659 65.9
Gohir.A10G215800 Gossypium hirsutum HOM05D004065 ORTHO05D004806 3.7e-229 798.5 636 65.3
RcHm_v2.0_Chr1g0366301 Rosa chinensis HOM05D004065 ORTHO05D004806 8.3e-229 797.3 640 65.9
DCAR_019167 Daucus carota HOM05D004065 ORTHO05D004806 2.4e-228 795.8 633 65.7
THA.LOC104799352 Tarenaya hassleriana HOM05D004065 ORTHO05D004806 9.2e-228 793.9 633 66.5
MD01G1124000 Malus domestica HOM05D004065 ORTHO05D004806 1.6e-227 793.1 647 65.4
Gohir.D10G224800 Gossypium hirsutum HOM05D004065 ORTHO05D004806 2.7e-227 792.3 636 64.9
Gorai.011G255800 Gossypium raimondii HOM05D004065 ORTHO05D004806 3.9e-226 788.5 636 64.8
Glyma.02G093600 Glycine max HOM05D004065 ORTHO05D004806 1.5e-225 786.6 637 64.7
Nn2g10418 Nelumbo nucifera HOM05D004065 ORTHO05D004806 2.5e-225 785.8 636 64.6
CANSAT56G4002 Cannabis sativa HOM05D004065 ORTHO05D004806 9.6e-225 783.9 638 64.6
QL08p059042 Quercus lobata HOM05D004065 ORTHO05D004806 9.6e-225 783.9 632 66.5
Thhalv10019927m.g Eutrema salsugineum HOM05D004065 ORTHO05D004806 1.6e-224 783.1 634 65.6
FAN10G0299 Fragaria x ananassa HOM05D004065 ORTHO05D004806 1.6e-224 783.1 635 64.1
Psat3g180760 Pisum sativum HOM05D004065 ORTHO05D004806 2.1e-224 782.7 637 63.9
TPR.G15495 Trifolium pratense HOM05D004065 ORTHO05D004806 2.8e-224 782.3 638 65.2
Medtr7g024190 Medicago truncatula HOM05D004065 ORTHO05D004806 6.2e-224 781.2 639 64.9
Ca_07234_v3 Cicer arietinum L. HOM05D004065 ORTHO05D004806 8.1e-224 780.8 639 64.5
AT3G12590 Arabidopsis thaliana HOM05D004065 ORTHO05D004806 1.4e-223 780.0 634 65.0
Phvul.008G013500 Phaseolus vulgaris HOM05D004065 ORTHO05D004806 1.8e-223 779.6 637 64.2
CARHR087100 Cardamine hirsuta HOM05D004065 ORTHO05D004806 5.2e-223 778.1 633 65.1
FAN03G1397 Fragaria x ananassa HOM05D004065 ORTHO05D004806 5.2e-223 778.1 635 63.8
AL3G24260 Arabidopsis lyrata HOM05D004065 ORTHO05D004806 8.9e-223 777.3 633 65.6
Carub.0003s1194 Capsella rubella HOM05D004065 ORTHO05D004806 8.9e-223 777.3 633 65.4
Sp3g10730 Schrenkiella parvula HOM05D004065 ORTHO05D004806 2.0e-222 776.2 632 65.2
CsaV3_5G008100 Cucumis sativus L. HOM05D004065 ORTHO05D004806 3.4e-222 775.4 635 64.4
BcaB04g21060 Brassica carinata HOM05D004065 ORTHO05D004806 4.9e-221 771.5 634 64.8
Aa31LG3G60 Aethionema arabicum HOM05D004065 ORTHO05D004806 6.4e-221 771.2 659 63.4
Sed0019555 Sechium edule HOM05D004065 ORTHO05D004806 8.4e-221 770.8 635 65.2
FAN06G3757 Fragaria x ananassa HOM05D004065 ORTHO05D004806 1.4e-220 770.0 635 63.0
FvH4_7g21970 Fragaria vesca HOM05D004065 ORTHO05D004806 3.2e-220 768.8 635 63.0
unitig_26.g10019 Utricularia gibba HOM05D004065 ORTHO05D004806 5.4e-220 768.1 609 66.7
FAN06G3343 Fragaria x ananassa HOM05D004065 ORTHO05D004806 1.6e-219 766.5 635 62.8
Sabra10G0160500 Salix brachista HOM05D004065 ORTHO05D004806 2.1e-219 766.1 634 64.7
PGR142G1305 Punica granatum HOM05D004065 ORTHO05D004806 6.0e-219 764.6 635 63.8
Lj1g0007112 Lotus japonicus HOM05D004065 ORTHO05D004806 2.3e-218 762.7 638 63.9
FAN01G1867 Fragaria x ananassa HOM05D004065 ORTHO05D004806 8.7e-218 760.8 635 62.5
BolC1t05197H Brassica oleracea HOM05D004065 ORTHO05D004806 8.1e-216 754.2 662 61.9
BraA03t12924Z Brassica rapa HOM05D004065 ORTHO05D004806 8.1e-216 754.2 637 62.8
BNapus_Darmor_BZH_scaffold_149p00120 Brassica napus HOM05D004065 ORTHO05D004806 2.4e-215 752.7 676 60.9
BraA01t04124Z Brassica rapa HOM05D004065 ORTHO05D004806 2.4e-215 752.7 676 60.9
Lalb_Chr04g0257821 Lupinus albus HOM05D004065 ORTHO05D004806 2.4e-215 752.7 640 63.6
C01p52580 Brassica napus HOM05D004065 ORTHO05D004806 4.0e-215 751.9 676 60.7
Aqoxy2G02042 Aquilegia oxysepala HOM05D004065 ORTHO05D004806 1.2e-214 750.4 648 62.2
Haze_17038 Corylus avellana HOM05D004065 ORTHO05D004806 3.4e-214 748.8 619 65.3
MELO3C023859.2 Cucumis melo HOM05D004065 ORTHO05D004806 4.4e-214 748.4 635 62.7
CiPaw.01G284400 Carya illinoinensis HOM05D004065 ORTHO05D004806 4.9e-213 745.0 632 63.3
ClCG07G003370 Citrullus lanatus HOM05D004065 ORTHO05D004806 8.4e-213 744.2 654 61.6
DCAR_015196 Daucus carota HOM05D004065 ORTHO05D004806 1.1e-212 743.8 632 64.1
arahy.Tifrunner.gnm1.ann1.P8VZLW Arachis hypogaea HOM05D004065 ORTHO05D004806 3.2e-212 742.3 639 63.7
arahy.Tifrunner.gnm1.ann1.XU51RJ Arachis hypogaea HOM05D004065 ORTHO05D004806 3.2e-212 742.3 639 63.7
BcaC01g04018 Brassica carinata HOM05D004065 ORTHO05D004806 7.1e-212 741.1 634 62.8
A03p37690 Brassica napus HOM05D000062 ORTHO05D004806 2.3e-210 736.1 625 62.7
C03p45740 Brassica napus HOM05D000062 ORTHO05D004806 2.3e-210 736.1 625 62.6
FAN06G3693 Fragaria x ananassa HOM05D004065 ORTHO05D004806 3.9e-210 735.3 636 61.3
LjContig00357g0027530 Lotus japonicus HOM05D004065 ORTHO05D004806 1.9e-209 733.0 646 60.5
AUR62038371 Chenopodium quinoa HOM05D004065 ORTHO05D004806 8.1e-208 727.6 641 61.3
Psat6g236120 Pisum sativum HOM05D004065 ORTHO05D004806 1.4e-207 726.9 655 60.3
Glyma.10G289700 Glycine max HOM05D004065 ORTHO05D004806 1.2e-206 723.8 647 60.3
Glyma.20G099500 Glycine max HOM05D004065 ORTHO05D004806 7.6e-206 721.1 649 60.2
EL10Ac2g03418 Beta vulgaris HOM05D004065 ORTHO05D004806 1.7e-205 719.9 634 60.6
Gohir.A05G350100 Gossypium hirsutum HOM05D004065 ORTHO05D004806 6.4e-205 718.0 636 59.9
PSO339G3310 Papaver somniferum HOM05D004065 ORTHO05D004806 6.0e-203 711.4 647 60.3
COL.COLO4_14967 Corchorus olitorius HOM05D004065 ORTHO05D004806 1.3e-202 710.3 572 65.2
Lj8C86G13 Lonicera japonica HOM05D004065 ORTHO05D004806 5.1e-202 708.4 667 59.4
Cpa.g.sc1437.1 Carica papaya HOM05D004065 ORTHO05D004806 3.9e-194 682.2 596 62.4
Hund20020 Selenicereus undatus HOM05D004065 ORTHO05D004806 2.1e-187 659.8 569 62.6
Zm00001eb139750 Zea mays HOM05D004065 ORTHO05D004806 4.6e-187 658.7 650 54.8
BcaB04g21068 Brassica carinata HOM05D004065 ORTHO05D004806 3.3e-185 652.5 577 60.0
HPP92_003382 Vanilla planifolia HOM05D004065 ORTHO05D004806 7.4e-185 651.4 633 55.9
AUR62040961 Chenopodium quinoa HOM05D004065 ORTHO05D004806 1.6e-179 633.6 566 60.1
Lalb_Chr06g0164301 Lupinus albus HOM05D004065 ORTHO05D004806 1.6e-179 633.6 583 59.0
Actinidia29212 Actinidia chinensis HOM05D004065 ORTHO05D004806 2.2e-176 623.2 568 61.3
ATR0559G344 Amborella trichopoda HOM05D004065 ORTHO05D004806 2.0e-158 563.5 619 51.7
CDE04G2206 Ceratophyllum demersum HOM05D004065 ORTHO05D004806 5.7e-153 545.4 586 50.9
SEGI_35631 Sequoiadendron giganteum HOM05D004065 ORTHO05D004806 4.8e-152 542.3 658 48.8
BcaB04g21053 Brassica carinata HOM05D004065 ORTHO05D004806 8.3e-144 515.0 613 49.9
Sc20g0002620 Simmondsia chinensis HOM05D004065 ORTHO05D004806 3.3e-132 476.5 402 63.4
AagrBONN_evm.TU.Sc2ySwM_344.343 Anthoceros agrestis HOM05D004065 ORTHO05D004806 1.5e-129 467.6 650 42.9
Glyma.18G288500 Glycine max HOM05D004065 ORTHO05D004806 1.3e-128 464.5 635 44.4
Mapoly0126s0012 Marchantia polymorpha HOM05D004065 ORTHO05D004806 1.4e-127 461.1 659 42.3
Pp3c24_6470 Physcomitrium patens HOM05D004065 ORTHO05D004806 2.7e-126 456.8 665 40.9
CiPaw.02G182500 Carya illinoinensis HOM05D004065 ORTHO05D004806 2.2e-96 357.5 269 67.3
SMO146G0347 Selaginella moellendorffii HOM05D004065 ORTHO05D004806 2.4e-95 354.0 586 37.4
SHI22587 Sapria himalayana HOM05D004065 ORTHO05D004806 5.1e-93 346.3 403 50.6
CBR_g54636 Chara braunii HOM05D004065 ORTHO05D004806 3.3e-92 343.6 715 33.6
CiPaw.02G182400 Carya illinoinensis HOM05D004065 ORTHO05D004806 4.0e-82 310.1 252 68.3
Actinidia13867 Actinidia chinensis HOM05D004065 ORTHO05D004806 3.7e-75 287.0 216 68.5
BolC8t48103H Brassica oleracea HOM05D004065 ORTHO05D004806 6.9e-66 256.1 224 57.1
FAN01G2126 Fragaria x ananassa HOM05D004065 ORTHO05D004806 4.2e-55 220.3 236 57.6
FvH4_7g22002 Fragaria vesca HOM05D004065 ORTHO05D004806 2.8e-51 207.6 124 83.1
Oeu012240.1 Olea europaea HOM05D004065 ORTHO05D004806 4.1e-50 203.8 168 68.5
SHI22586 Sapria himalayana HOM05D004065 ORTHO05D004806 1.1e-47 195.7 198 52.5
FAN18G1692 Fragaria x ananassa HOM05D004065 ORTHO05D004806 6.7e-45 186.4 213 50.2
FAN14G4766 Fragaria x ananassa HOM05D004065 ORTHO05D004806 4.4e-44 183.7 209 50.7
FAN03G2077 Fragaria x ananassa HOM05D004065 ORTHO05D004806 5.7e-44 183.3 256 45.3
FAN25G3689 Fragaria x ananassa HOM05D004065 ORTHO05D004806 1.3e-43 182.2 205 51.2
Os01g0974300 Oryza sativa ssp. japonica HOM05D004065 ORTHO05D004806 4.8e-43 180.3 180 52.2
BolC3t16849H Brassica oleracea HOM05D004065 ORTHO05D004806 5.3e-42 176.8 130 64.6
FAN06G1862 Fragaria x ananassa HOM05D004065 ORTHO05D004806 1.3e-32 145.6 134 53.7
FAN11G1748 Fragaria x ananassa HOM05D004065 ORTHO05D004806 2.9e-32 144.4 130 55.4
FAN08G2500 Fragaria x ananassa HOM05D000391 ORTHO05D000293 3.2e-31 141.0 143 50.3
FvH4_7g26620 Fragaria vesca HOM05D004065 ORTHO05D004806 4.2e-31 140.6 130 54.6
MBI05_g10364_MAGBIO Magnolia biondii HOM05D004065 ORTHO05D004806 8.3e-27 126.3 108 59.3
FAN03G1547 Fragaria x ananassa HOM05D004065 ORTHO05D004806 1.7e-24 118.6 92 62.0
FAN25G3365 Fragaria x ananassa HOM05D004065 ORTHO05D004806 1.7e-24 118.6 111 54.1
AagrBONN_evm.TU.Sc2ySwM_344.350 Anthoceros agrestis HOM05D004065 ORTHO05D004806 5.7e-20 103.6 62 79.0
arahy.Tifrunner.gnm1.ann1.JMTW06 Arachis hypogaea HOM05D004065 ORTHO05D004806 6.6e-16 90.1 57 80.7
Cre17.g707100 Chlamydomonas reinhardtii HOM05D004065 ORTHO05D004806 8.9e-13 79.7 96 40.6
AagrBONN_evm.TU.Sc2ySwM_344.349 Anthoceros agrestis HOM05D004065 ORTHO05D004806 3.4e-12 77.8 246 28.0
FAN01G2840 Fragaria x ananassa HOM05D004065 ORTHO05D004806 1.2e-09 69.3 42 78.6
Zm00001eb362160 Zea mays HOM05D008199 ORTHO05D010334 2.7e-09 68.2 134 38.1
FAN06G4849 Fragaria x ananassa HOM05D004065 ORTHO05D004806 2.1e-06 58.5 32 75.0


User provided reference genes

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