Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc06g036780.3 Solanum lycopersicum HOM05D005314 ORTHO05D006522 1.9e-187 659.1 345 100.0
Sopen06g012940 Solanum pennellii HOM05D005314 ORTHO05D006522 1.6e-186 656.0 345 99.1
CAN.G130.11 Capsicum annuum HOM05D005314 ORTHO05D006522 3.0e-180 635.2 345 95.9
Peaxi162Scf01088g00005 Petunia axillaris HOM05D005314 ORTHO05D006522 1.4e-161 573.2 324 90.7
SalBow4G3021 Salvia bowleyana HOM05D005314 ORTHO05D006522 1.1e-155 553.5 345 82.6
Migut.A00114 Erythranthe guttata HOM05D005314 ORTHO05D006522 2.1e-154 549.3 345 81.7
Prupe.1G409300 Prunus persica HOM05D005314 ORTHO05D006522 1.8e-153 546.2 345 80.9
Cc08_g10890 Coffea canephora HOM05D005314 ORTHO05D006522 1.5e-152 543.1 345 81.2
Dinv22878 Davidia involucrata HOM05D005314 ORTHO05D006522 1.9e-150 536.2 345 80.0
Lsat_1_v5_gn_6_14601 Lactuca sativa HOM05D005314 ORTHO05D006522 4.2e-150 535.0 345 80.0
MSTRG.25961 Avicennia marina HOM05D005314 ORTHO05D006522 5.4e-150 534.6 345 80.6
FvH4_2g31600 Fragaria vesca HOM05D005314 ORTHO05D006522 9.3e-150 533.9 345 80.6
Cfa017974 Carpinus fangiana HOM05D005314 ORTHO05D006522 1.6e-149 533.1 345 78.6
ECA233G4949 Erigeron canadensis HOM05D005314 ORTHO05D006522 4.6e-149 531.6 347 79.3
Haze_18156 Corylus avellana HOM05D005314 ORTHO05D006522 6.0e-149 531.2 345 78.3
QL02p000736 Quercus lobata HOM05D005314 ORTHO05D006522 1.3e-148 530.0 344 78.5
RcHm_v2.0_Chr6g0311221 Rosa chinensis HOM05D005314 ORTHO05D006522 1.8e-148 529.6 345 80.0
MD15G1056700 Malus domestica HOM05D005314 ORTHO05D006522 3.0e-148 528.9 345 79.1
Actinidia30326 Actinidia chinensis HOM05D005314 ORTHO05D006522 1.5e-147 526.6 346 79.2
CANSAT25G2280 Cannabis sativa HOM05D005314 ORTHO05D006522 1.5e-147 526.6 347 79.5
CSS0005464 Camellia sinensis var. sinensis HOM05D005314 ORTHO05D006522 1.9e-147 526.2 346 78.9
TAR369G0158 Trochodendron aralioides HOM05D005314 ORTHO05D006522 1.9e-147 526.2 345 78.8
TAR636G1106 Trochodendron aralioides HOM05D005314 ORTHO05D006522 1.9e-147 526.2 345 78.8
GSVIVG01035376001 Vitis vinifera HOM05D005314 ORTHO05D006522 7.4e-147 524.2 348 79.0
MD08G1064900 Malus domestica HOM05D005314 ORTHO05D006522 9.6e-147 523.9 345 78.8
SGA_v2.0_scaffold20G09204 Striga asiatica HOM05D005314 ORTHO05D006522 9.6e-147 523.9 392 72.4
CiPaw.15G037000 Carya illinoinensis HOM05D005314 ORTHO05D006522 2.8e-146 522.3 345 76.5
CiPaw.16G027100 Carya illinoinensis HOM05D005314 ORTHO05D006522 1.2e-144 516.9 345 76.8
Thecc.09G057100 Theobroma cacao HOM05D005314 ORTHO05D006522 1.2e-144 516.9 345 76.2
Hma1.2p1_0544F.1_g175630 Hydrangea macrophylla HOM05D005314 ORTHO05D006522 2.0e-144 516.2 344 78.5
Manes.03G050000 Manihot esculenta HOM05D005314 ORTHO05D006522 2.0e-144 516.2 345 77.4
PGR044G2019 Punica granatum HOM05D005314 ORTHO05D006522 2.0e-144 516.2 346 77.2
AUR62009122 Chenopodium quinoa HOM05D005314 ORTHO05D006522 2.6e-144 515.8 343 75.8
CsaV3_4G035770 Cucumis sativus L. HOM05D005314 ORTHO05D006522 4.5e-144 515.0 345 76.5
Eucgr.C03058 Eucalyptus grandis HOM05D005314 ORTHO05D006522 5.8e-144 514.6 345 76.8
COL.COLO4_21084 Corchorus olitorius HOM05D005314 ORTHO05D006522 9.9e-144 513.8 345 77.1
HanXRQChr08g0226511 Helianthus annuus HOM05D005314 ORTHO05D006522 9.9e-144 513.8 345 77.7
Ca_13152_v3 Cicer arietinum L. HOM05D005314 ORTHO05D006522 8.4e-143 510.8 345 76.8
FAN27G1630 Fragaria x ananassa HOM05D005314 ORTHO05D006522 1.1e-142 510.4 345 78.3
Gorai.013G220600 Gossypium raimondii HOM05D005314 ORTHO05D006522 1.4e-142 510.0 345 74.8
Gohir.D13G194600 Gossypium hirsutum HOM05D005314 ORTHO05D006522 1.9e-142 509.6 345 74.8
Potri.018G060500 Populus trichocarpa HOM05D005314 ORTHO05D006522 1.9e-142 509.6 345 76.5
BcaNung02637 Brassica carinata HOM05D005314 ORTHO05D006522 5.5e-142 508.1 343 74.1
TWI32G0330 Tripterygium wilfordii HOM05D005314 ORTHO05D006522 1.2e-141 506.9 345 76.2
PSO210G6435 Papaver somniferum HOM05D005314 ORTHO05D006522 1.6e-141 506.5 346 75.4
Rhsim11G0042200 Rhododendron simsii HOM05D005314 ORTHO05D006522 2.1e-141 506.1 367 74.7
TWI34G0632 Tripterygium wilfordii HOM05D005314 ORTHO05D006522 3.5e-141 505.4 345 75.4
Gohir.A07G021950 Gossypium hirsutum HOM05D005314 ORTHO05D006522 4.6e-141 505.0 345 74.5
Gorai.001G022500 Gossypium raimondii HOM05D005314 ORTHO05D006522 4.6e-141 505.0 345 74.8
ClCG05G017990 Citrullus lanatus HOM05D005314 ORTHO05D006522 6.0e-141 504.6 344 76.5
Gohir.A13G187700 Gossypium hirsutum HOM05D005314 ORTHO05D006522 6.0e-141 504.6 345 74.2
Potri.006G226000 Populus trichocarpa HOM05D005314 ORTHO05D006522 6.0e-141 504.6 345 75.9
Lj1g0000731 Lotus japonicus HOM05D005314 ORTHO05D006522 7.9e-141 504.2 345 74.2
PSO210G6321 Papaver somniferum HOM05D005314 ORTHO05D006522 1.0e-140 503.8 346 75.1
C09p64870 Brassica napus HOM05D005314 ORTHO05D006522 1.8e-140 503.1 343 73.8
Sed0001440 Sechium edule HOM05D005314 ORTHO05D006522 3.0e-140 502.3 345 74.5
TPR.G13039 Trifolium pratense HOM05D005314 ORTHO05D006522 3.9e-140 501.9 347 75.2
A10p25800 Brassica napus HOM05D005314 ORTHO05D006522 5.1e-140 501.5 343 73.2
A02p01290 Brassica napus HOM05D005314 ORTHO05D006522 6.7e-140 501.1 343 73.5
BolC9t59318H Brassica oleracea HOM05D005314 ORTHO05D006522 6.7e-140 501.1 343 73.5
BraA02t05108Z Brassica rapa HOM05D005314 ORTHO05D006522 6.7e-140 501.1 343 73.5
Aqoxy7G04033 Aquilegia oxysepala HOM05D000411 ORTHO05D006522 1.5e-139 500.0 337 76.0
BcaC03g13403 Brassica carinata HOM05D005314 ORTHO05D006522 1.9e-139 499.6 343 73.2
C02p05500 Brassica napus HOM05D005314 ORTHO05D006522 1.9e-139 499.6 343 73.2
BolC2t06496H Brassica oleracea HOM05D005314 ORTHO05D006522 1.9e-139 499.6 343 73.2
Thhalv10014010m.g Eutrema salsugineum HOM05D005314 ORTHO05D006522 1.9e-139 499.6 343 73.5
Nn8g38796 Nelumbo nucifera HOM05D005314 ORTHO05D006522 2.5e-139 499.2 350 75.1
Sp6g31630 Schrenkiella parvula HOM05D005314 ORTHO05D006522 2.5e-139 499.2 343 73.2
THA.LOC104811236 Tarenaya hassleriana HOM05D005314 ORTHO05D006522 3.3e-139 498.8 343 73.8
Medtr1g015820 Medicago truncatula HOM05D005314 ORTHO05D006522 4.3e-139 498.4 347 75.2
Psat6g021480 Pisum sativum HOM05D005314 ORTHO05D006522 5.6e-139 498.0 345 75.7
AL6G22740 Arabidopsis lyrata HOM05D005314 ORTHO05D006522 1.3e-138 496.9 343 72.9
AT5G11960 Arabidopsis thaliana HOM05D005314 ORTHO05D006522 2.1e-138 496.1 343 72.6
Glyma.06G053100 Glycine max HOM05D005314 ORTHO05D006522 2.1e-138 496.1 345 74.5
Carub.0006s1050 Capsella rubella HOM05D005314 ORTHO05D006522 3.7e-138 495.4 343 72.6
Phvul.001G037500 Phaseolus vulgaris HOM05D005314 ORTHO05D006522 4.8e-138 495.0 345 73.3
Phvul.009G078900 Phaseolus vulgaris HOM05D005314 ORTHO05D006522 4.8e-138 495.0 336 73.8
Glyma.14G097400 Glycine max HOM05D005314 ORTHO05D006522 1.8e-137 493.0 351 73.5
BraA10t44644Z Brassica rapa HOM05D005314 ORTHO05D006522 2.4e-137 492.7 355 70.7
Aa31LG3G15270 Aethionema arabicum HOM05D005314 ORTHO05D006522 2.6e-136 489.2 355 70.1
Hund19438 Selenicereus undatus HOM05D005314 ORTHO05D006522 2.6e-136 489.2 343 73.8
ATR0789G137 Amborella trichopoda HOM05D005314 ORTHO05D006522 2.2e-135 486.1 345 71.6
MELO3C016882.2 Cucumis melo HOM05D005314 ORTHO05D006522 8.4e-135 484.2 345 73.3
VMungo0647G2045 Vigna mungo HOM05D005314 ORTHO05D006522 8.4e-135 484.2 358 70.9
Lalb_Chr11g0063171 Lupinus albus HOM05D005314 ORTHO05D006522 1.4e-134 483.4 345 72.5
Lalb_Chr22g0356141 Lupinus albus HOM05D005314 ORTHO05D006522 2.1e-130 469.5 309 76.7
FAN15G2750 Fragaria x ananassa HOM05D005314 ORTHO05D006522 2.8e-130 469.2 313 78.9
Ciclev10008891m.g Citrus clementina HOM05D005314 ORTHO05D006522 4.8e-130 468.4 337 71.8
HPP92_007653 Vanilla planifolia HOM05D005314 ORTHO05D006522 4.8e-130 468.4 339 69.6
FAN24G2134 Fragaria x ananassa HOM05D005314 ORTHO05D006522 6.3e-130 468.0 308 79.9
CDE06G1634 Ceratophyllum demersum HOM05D005314 ORTHO05D006522 1.4e-129 466.8 345 71.9
Sabra18G0054400 Salix brachista HOM05D005314 ORTHO05D006522 3.4e-128 462.2 415 62.2
VMungo1309G2963 Vigna mungo HOM05D005314 ORTHO05D006522 1.0e-127 460.7 336 70.5
MBI01_g21122_MAGBIO Magnolia biondii HOM05D005314 ORTHO05D006522 6.5e-127 458.0 336 71.7
Lj8A530G14 Lonicera japonica HOM05D005314 ORTHO05D006522 1.0e-124 450.7 295 80.0
DCAR_007733 Daucus carota HOM05D005314 ORTHO05D006522 3.0e-124 449.1 397 63.0
Atru.chr7.1939 Acer truncatum HOM05D005314 ORTHO05D006522 3.9e-124 448.7 272 82.0
Glyma.04G052700 Glycine max HOM05D005314 ORTHO05D006522 5.7e-123 444.9 308 74.0
Lalb_Chr14g0366381 Lupinus albus HOM05D005314 ORTHO05D006522 1.6e-122 443.4 272 80.9
Glyma.17G227100 Glycine max HOM05D005314 ORTHO05D006522 2.6e-120 436.0 345 68.1
arahy.Tifrunner.gnm1.ann1.VQ1HGR Arachis hypogaea HOM05D005314 ORTHO05D006522 1.7e-119 433.3 345 68.1
Sc23g0005690 Simmondsia chinensis HOM05D005314 ORTHO05D006522 1.2e-117 427.2 343 67.1
Oeu003996.1 Olea europaea HOM05D005314 ORTHO05D006522 4.1e-113 412.1 328 70.4
Sabra06G0174700 Salix brachista HOM05D005314 ORTHO05D006522 1.9e-110 403.3 418 56.2
arahy.Tifrunner.gnm1.ann1.UTD444 Arachis hypogaea HOM05D005314 ORTHO05D006522 4.2e-110 402.1 345 63.8
Nitab4.5_0000972g0030 Nicotiana tabacum HOM05D005314 ORTHO05D006522 1.6e-109 400.2 435 58.4
vmacro00123 Vaccinium macrocarpon HOM05D005314 ORTHO05D006522 1.6e-109 400.2 292 73.6
arahy.Tifrunner.gnm1.ann1.GAY7D4 Arachis hypogaea HOM05D005314 ORTHO05D006522 6.1e-109 398.3 345 63.2
Nitab4.5_0000268g0140 Nicotiana tabacum HOM05D005314 ORTHO05D006522 2.8e-106 389.4 344 65.7
Dinv28005 Davidia involucrata HOM05D005314 ORTHO05D006522 7.0e-105 384.8 222 86.5
EL10Ac2g03829 Beta vulgaris HOM05D005314 ORTHO05D006522 1.9e-102 376.7 343 60.6
unitig_88.g27677 Utricularia gibba HOM05D005314 ORTHO05D006522 6.7e-100 368.2 384 54.2
Duzib150G1607 Durio zibethinus HOM05D005314 ORTHO05D006522 2.2e-98 363.2 222 80.6
arahy.Tifrunner.gnm1.ann1.6D5JL1 Arachis hypogaea HOM05D005314 ORTHO05D006522 3.0e-92 342.8 345 57.7
Sed0024799 Sechium edule HOM05D005314 ORTHO05D006522 4.4e-91 339.0 250 70.8
Gohir.D07G021900 Gossypium hirsutum HOM05D005314 ORTHO05D006522 7.7e-88 328.2 204 80.4
Mapoly0049s0128 Marchantia polymorpha HOM05D005314 ORTHO05D006522 2.9e-79 299.7 333 48.3
Zm00001eb155260 Zea mays HOM05D005314 ORTHO05D006522 2.3e-76 290.0 249 62.2
Ah.10g034130 Amaranthus hybridus HOM05D005314 ORTHO05D006522 2.9e-74 283.1 249 61.4
MD11G1243300 Malus domestica HOM05D005314 ORTHO05D006522 5.4e-73 278.9 169 81.7
CARHR201170 Cardamine hirsuta HOM05D005314 ORTHO05D006522 2.8e-69 266.5 200 65.5
Pp3c7_50 Physcomitrium patens HOM05D005314 ORTHO05D006522 4.7e-69 265.8 302 46.7
Hund03325 Selenicereus undatus HOM05D005314 ORTHO05D006522 2.3e-63 246.9 254 54.7
PGSC0003DMG400031356 Solanum tuberosum HOM05D005314 ORTHO05D006522 2.9e-58 229.9 124 96.8
Lj7A260G18 Lonicera japonica HOM05D005314 ORTHO05D006522 1.9e-57 227.3 232 58.2
Cpa.g.sc7.160 Carica papaya HOM05D005314 ORTHO05D006522 8.1e-53 211.8 144 77.1
Os01g0708300 Oryza sativa ssp. japonica HOM05D005314 ORTHO05D006522 1.1e-52 211.5 144 70.1
RcHm_v2.0_Chr1g0383701 Rosa chinensis HOM05D005314 ORTHO05D006522 5.2e-52 209.1 154 69.5
Cpa.g.sc7.159 Carica papaya HOM05D005314 ORTHO05D006522 2.9e-50 203.4 165 63.6
CBR_g50008 Chara braunii HOM05D005314 ORTHO05D006522 3.9e-47 193.0 329 38.6
AUR62039137 Chenopodium quinoa HOM05D005314 ORTHO05D006522 2.8e-45 186.8 131 73.3
CSS0003098 Camellia sinensis var. sinensis HOM05D005314 ORTHO05D006522 2.9e-42 176.8 110 81.8
arahy.Tifrunner.gnm1.ann1.IMU44M Arachis hypogaea HOM05D005314 ORTHO05D006522 1.2e-40 171.4 184 53.8
MCO12G408 Micromonas commoda HOM05D005314 ORTHO05D006522 1.2e-40 171.4 341 34.3
Cre10.g419700 Chlamydomonas reinhardtii HOM05D005314 ORTHO05D006522 1.7e-39 167.5 342 33.0
PRCOL_00001271 Prasinoderma coloniale HOM05D005314 ORTHO05D006522 1.9e-38 164.1 323 32.2
BcaB03g16563 Brassica carinata HOM05D005314 ORTHO05D006522 3.3e-30 136.7 113 63.7
Oeu040341.1 Olea europaea HOM05D005314 ORTHO05D006522 5.8e-27 125.9 74 83.8
Gohir.D07G021800 Gossypium hirsutum HOM05D005314 ORTHO05D006522 4.8e-21 106.3 95 58.9
CSS0034519 Camellia sinensis var. sinensis HOM05D005314 ORTHO05D006522 1.4e-20 104.8 95 63.2
arahy.Tifrunner.gnm1.ann1.TY68CU Arachis hypogaea HOM05D005314 ORTHO05D005864 6.9e-20 102.4 106 56.6
SEGI_34785 Sequoiadendron giganteum HOM05D005314 ORTHO05D006522 3.8e-18 96.7 73 63.0


User provided reference genes

Program Settings