Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc06g036570.1 Solanum lycopersicum HOM05D002317 ORTHO05D002420 1.2e-33 146.0 76 100.0
CAN.G1193.1 Capsicum annuum HOM05D002317 ORTHO05D002420 1.5e-15 85.9 48 89.6
Cc02_g08560 Coffea canephora HOM05D002317 ORTHO05D002420 9.5e-15 83.2 48 85.4
GSVIVG01032617001 Vitis vinifera HOM05D002317 ORTHO05D002420 8.1e-14 80.1 48 83.3
Phvul.007G008700 Phaseolus vulgaris HOM05D002317 ORTHO05D002420 1.1e-13 79.7 48 81.2
Rhsim03G0125700 Rhododendron simsii HOM05D002317 ORTHO05D002420 1.1e-13 79.7 47 83.0
Sabra10G0164800 Salix brachista HOM05D002317 ORTHO05D002420 1.1e-13 79.7 55 74.5
vmacro07137 Vaccinium macrocarpon HOM05D002317 ORTHO05D002420 1.1e-13 79.7 47 83.0
Aqoxy2G01951 Aquilegia oxysepala HOM05D002317 ORTHO05D002420 1.4e-13 79.3 48 83.3
Manes.07G107300 Manihot esculenta HOM05D002317 ORTHO05D002420 1.8e-13 79.0 48 81.2
THA.LOC104799368 Tarenaya hassleriana HOM05D002317 ORTHO05D002420 1.8e-13 79.0 66 62.1
Atru.chr12.581 Acer truncatum HOM05D002317 ORTHO05D002420 2.4e-13 78.6 48 79.2
EL10Ac2g03481 Beta vulgaris HOM05D002317 ORTHO05D002420 2.4e-13 78.6 48 81.2
Dinv25944 Davidia involucrata HOM05D002317 ORTHO05D002420 2.4e-13 78.6 51 76.5
Peaxi162Scf00060g00621 Petunia axillaris HOM05D002317 ORTHO05D002420 2.4e-13 78.6 48 81.2
AUR62035983 Chenopodium quinoa HOM05D002317 ORTHO05D002420 4.0e-13 77.8 48 79.2
AUR62041631 Chenopodium quinoa HOM05D002317 ORTHO05D002420 4.0e-13 77.8 48 79.2
Manes.10G038600 Manihot esculenta HOM05D002317 ORTHO05D002420 4.0e-13 77.8 48 79.2
VMungo0720G0203 Vigna mungo HOM05D002317 ORTHO05D002420 4.0e-13 77.8 48 79.2
Aqoxy4G03076 Aquilegia oxysepala HOM05D002317 ORTHO05D002420 5.2e-13 77.4 51 74.5
CiPaw.02G178900 Carya illinoinensis HOM05D002317 ORTHO05D002420 5.2e-13 77.4 48 81.2
Eucgr.G02771 Eucalyptus grandis HOM05D002317 ORTHO05D002420 5.2e-13 77.4 48 77.1
Oeu058317.1 Olea europaea HOM05D002317 ORTHO05D002420 5.2e-13 77.4 48 79.2
Ca_11316_v3 Cicer arietinum L. HOM05D002317 ORTHO05D002420 6.8e-13 77.0 47 80.9
Lj5g0002945 Lotus japonicus HOM05D002317 ORTHO05D002420 6.8e-13 77.0 48 79.2
MD13G1157000 Malus domestica HOM05D002317 ORTHO05D002420 6.8e-13 77.0 48 81.2
Haze_16977 Corylus avellana HOM05D002317 ORTHO05D002420 8.9e-13 76.6 53 73.6
Actinidia38219 Actinidia chinensis HOM05D002317 ORTHO05D002420 1.2e-12 76.3 48 77.1
Lsat_1_v5_gn_2_68321 Lactuca sativa HOM05D002317 ORTHO05D002420 1.2e-12 76.3 48 77.1
Sc20g0002370 Simmondsia chinensis HOM05D002317 ORTHO05D002420 1.2e-12 76.3 48 77.1
TWI38G1115 Tripterygium wilfordii HOM05D002317 ORTHO05D002420 1.2e-12 76.3 48 77.1
AL6G24170 Arabidopsis lyrata HOM05D002317 ORTHO05D002420 1.5e-12 75.9 48 77.1
Cpa.g.sc1.311 Carica papaya HOM05D002317 ORTHO05D002420 1.5e-12 75.9 52 73.1
Glyma.10G292100 Glycine max HOM05D002317 ORTHO05D002420 1.5e-12 75.9 47 78.7
TPR.G20924 Trifolium pratense HOM05D002317 ORTHO05D002420 1.5e-12 75.9 47 78.7
MD07G1186500 Malus domestica HOM05D002317 ORTHO05D002420 2.0e-12 75.5 48 79.2
Potri.010G212900 Populus trichocarpa HOM05D002317 ORTHO05D002420 2.0e-12 75.5 48 77.1
Prupe.2G225300 Prunus persica HOM05D002317 ORTHO05D002420 2.0e-12 75.5 48 79.2
TAR369G0742 Trochodendron aralioides HOM05D002317 ORTHO05D002420 2.0e-12 75.5 48 77.1
CARHR199880 Cardamine hirsuta HOM05D002317 ORTHO05D002420 2.6e-12 75.1 48 75.0
Ciclev10030880m.g Citrus clementina HOM05D002317 ORTHO05D002420 2.6e-12 75.1 47 76.6
FAN06G0204 Fragaria x ananassa HOM05D002317 ORTHO05D002420 2.6e-12 75.1 48 79.2
Glyma.20G241400 Glycine max HOM05D002317 ORTHO05D002420 2.6e-12 75.1 47 78.7
QL08p057705 Quercus lobata HOM05D002317 ORTHO05D002420 2.6e-12 75.1 47 78.7
Aa31sc157G20 Aethionema arabicum HOM05D002317 ORTHO05D002420 3.4e-12 74.7 48 75.0
A10p24710 Brassica napus HOM05D002317 ORTHO05D002420 3.4e-12 74.7 48 75.0
C09p63540 Brassica napus HOM05D002317 ORTHO05D002420 3.4e-12 74.7 48 75.0
BolC9t59198H Brassica oleracea HOM05D002317 ORTHO05D002420 3.4e-12 74.7 48 75.0
BraA10t44534Z Brassica rapa HOM05D002317 ORTHO05D002420 3.4e-12 74.7 48 75.0
Carub.0006s1172 Capsella rubella HOM05D002317 ORTHO05D002420 3.4e-12 74.7 48 75.0
Thhalv10012885m.g Eutrema salsugineum HOM05D002317 ORTHO05D002420 3.4e-12 74.7 48 75.0
Sp6g30470 Schrenkiella parvula HOM05D002317 ORTHO05D002420 3.4e-12 74.7 48 75.0
Sabra08G0034300 Salix brachista HOM05D002317 ORTHO05D002420 4.4e-12 74.3 48 77.1
ATR0759G004 Amborella trichopoda HOM05D002317 ORTHO05D002420 5.8e-12 73.9 48 75.0
CANSAT56G2271 Cannabis sativa HOM05D002317 ORTHO05D002420 5.8e-12 73.9 48 77.1
FvH4_7g20871 Fragaria vesca HOM05D002317 ORTHO05D002420 5.8e-12 73.9 48 77.1
FAN06G4957 Fragaria x ananassa HOM05D002317 ORTHO05D002420 5.8e-12 73.9 48 77.1
FAN10G1751 Fragaria x ananassa HOM05D002317 ORTHO05D002420 5.8e-12 73.9 48 77.1
Potri.008G048100 Populus trichocarpa HOM05D002317 ORTHO05D002420 5.8e-12 73.9 48 77.1
CSS0029275 Camellia sinensis var. sinensis HOM05D002317 ORTHO05D002420 7.6e-12 73.6 47 76.6
DCAR_019157 Daucus carota HOM05D002317 ORTHO05D002420 7.6e-12 73.6 48 75.0
Migut.F00787 Erythranthe guttata HOM05D002317 ORTHO05D002420 7.6e-12 73.6 48 72.9
TAR623G1778 Trochodendron aralioides HOM05D002317 ORTHO05D002420 7.6e-12 73.6 48 77.1
AT5G13560 Arabidopsis thaliana HOM05D002317 ORTHO05D002420 1.3e-11 72.8 48 72.9
RcHm_v2.0_Chr1g0365121 Rosa chinensis HOM05D002317 ORTHO05D002420 1.3e-11 72.8 48 75.0
Dinv35666 Davidia involucrata HOM05D002317 ORTHO05D002420 1.7e-11 72.4 48 72.9
Duzib114G1018 Durio zibethinus HOM05D002317 ORTHO05D002420 1.7e-11 72.4 49 69.4
Nn8g40989 Nelumbo nucifera HOM05D002317 ORTHO05D002420 1.7e-11 72.4 53 69.8
Nitab4.5_0000426g0160 Nicotiana tabacum HOM05D002317 ORTHO05D002420 1.7e-11 72.4 48 79.2
Nitab4.5_0008987g0020 Nicotiana tabacum HOM05D002317 ORTHO05D002420 1.7e-11 72.4 48 79.2
arahy.Tifrunner.gnm1.ann1.MSYP3Y Arachis hypogaea HOM05D002317 ORTHO05D002420 2.2e-11 72.0 48 72.9
arahy.Tifrunner.gnm1.ann1.QR9DU5 Arachis hypogaea HOM05D002317 ORTHO05D002420 2.2e-11 72.0 48 72.9
HanXRQChr07g0191731 Helianthus annuus HOM05D002317 ORTHO05D002420 2.2e-11 72.0 48 75.0
SGA_v2.0_scaffold243G44313 Striga asiatica HOM05D002317 ORTHO05D002420 2.2e-11 72.0 49 73.5
CSS0018068 Camellia sinensis var. sinensis HOM05D002317 ORTHO05D002420 2.9e-11 71.6 48 72.9
Duzib128G0207 Durio zibethinus HOM05D002317 ORTHO05D002420 2.9e-11 71.6 48 70.8
PSO339G5867 Papaver somniferum HOM05D002317 ORTHO05D002420 2.9e-11 71.6 51 70.6
PSO384G0194 Papaver somniferum HOM05D002317 ORTHO05D002420 2.9e-11 71.6 51 70.6
Thecc.10G060500 Theobroma cacao HOM05D002317 ORTHO05D002420 2.9e-11 71.6 48 70.8
ECA238G1105 Erigeron canadensis HOM05D002317 ORTHO05D002420 3.8e-11 71.2 45 75.6
Lj1C930G3 Lonicera japonica HOM05D002317 ORTHO05D002420 3.8e-11 71.2 51 68.6
Sed0008808 Sechium edule HOM05D002317 ORTHO05D002420 3.8e-11 71.2 48 72.9
ClCG02G013630 Citrullus lanatus HOM05D002317 ORTHO05D002420 4.9e-11 70.9 48 72.9
MELO3C023813.2 Cucumis melo HOM05D002317 ORTHO05D002420 4.9e-11 70.9 48 72.9
CsaV3_5G006560 Cucumis sativus L. HOM05D002317 ORTHO05D002420 4.9e-11 70.9 48 72.9
Gohir.A05G352300 Gossypium hirsutum HOM05D002317 ORTHO05D002420 6.4e-11 70.5 48 70.8
Gohir.D04G060532 Gossypium hirsutum HOM05D002317 ORTHO05D002420 6.4e-11 70.5 48 70.8
Gohir.D04G060600 Gossypium hirsutum HOM05D002317 ORTHO05D002420 6.4e-11 70.5 48 70.8
Gorai.012G067500 Gossypium raimondii HOM05D002317 ORTHO05D002420 6.4e-11 70.5 48 70.8
HanXRQChr14g0444611 Helianthus annuus HOM05D002317 ORTHO05D002420 6.4e-11 70.5 48 70.8
Lalb_Chr21g0307211 Lupinus albus HOM05D002317 ORTHO05D002420 6.4e-11 70.5 51 68.6
PGR142G0021 Punica granatum HOM05D002317 ORTHO05D002420 6.4e-11 70.5 48 70.8
Lalb_Chr06g0164131 Lupinus albus HOM05D002317 ORTHO05D002420 8.4e-11 70.1 47 72.3
Sed0019600 Sechium edule HOM05D002317 ORTHO05D002420 8.4e-11 70.1 48 70.8
GSVIVG01025589001 Vitis vinifera HOM05D002317 ORTHO05D002420 8.4e-11 70.1 48 75.0
FAN03G3213 Fragaria x ananassa HOM05D002317 ORTHO05D002420 1.1e-10 69.7 48 77.1
Medtr1g115610 Medicago truncatula HOM05D002317 ORTHO05D002420 1.1e-10 69.7 47 72.3
Carub.0004s1927 Capsella rubella HOM05D002317 ORTHO05D002420 1.4e-10 69.3 48 70.8
Nitab4.5_0003274g0040 Nicotiana tabacum HOM05D002317 ORTHO05D002420 1.4e-10 69.3 41 85.4
vmacro20102 Vaccinium macrocarpon HOM05D002317 ORTHO05D002420 1.4e-10 69.3 69 55.1
Actinidia19739 Actinidia chinensis HOM05D002317 ORTHO05D002420 1.9e-10 68.9 48 68.8
Actinidia26532 Actinidia chinensis HOM05D002317 ORTHO05D002420 1.9e-10 68.9 48 68.8
Gohir.A10G209900 Gossypium hirsutum HOM05D002317 ORTHO05D002420 1.9e-10 68.9 48 66.7
Gohir.D10G218200 Gossypium hirsutum HOM05D002317 ORTHO05D002420 1.9e-10 68.9 48 66.7
Gorai.011G244900 Gossypium raimondii HOM05D002317 ORTHO05D002420 1.9e-10 68.9 48 66.7
AL4G33740 Arabidopsis lyrata HOM05D002317 ORTHO05D002420 2.4e-10 68.6 48 68.8
AT2G37370 Arabidopsis thaliana HOM05D002317 ORTHO05D002420 2.4e-10 68.6 48 68.8
CDE04G0782 Ceratophyllum demersum HOM05D002317 ORTHO05D002420 2.4e-10 68.6 48 70.8
CDE07G0510 Ceratophyllum demersum HOM05D002317 ORTHO05D002420 3.2e-10 68.2 48 70.8
CARHR132230 Cardamine hirsuta HOM05D002317 ORTHO05D002420 4.1e-10 67.8 48 68.8
Thhalv10016358m.g Eutrema salsugineum HOM05D002317 ORTHO05D002420 4.1e-10 67.8 48 68.8
Sabra19G0108800 Salix brachista HOM05D002317 ORTHO05D002420 4.1e-10 67.8 44 79.5
Sp4g19680 Schrenkiella parvula HOM05D002317 ORTHO05D002420 4.1e-10 67.8 48 68.8
HPP92_000640 Vanilla planifolia HOM05D002317 ORTHO05D002420 7.1e-10 67.0 48 66.7
HPP92_000707 Vanilla planifolia HOM05D002317 ORTHO05D002420 7.1e-10 67.0 48 66.7
HPP92_000710 Vanilla planifolia HOM05D002317 ORTHO05D002420 7.1e-10 67.0 48 66.7
Psat6g238320 Pisum sativum HOM05D002317 ORTHO05D002420 9.2e-10 66.6 47 68.1
Rhsim05G0185500 Rhododendron simsii HOM05D002317 ORTHO05D002420 9.2e-10 66.6 53 62.3
COL.COLO4_07089 Corchorus olitorius HOM05D002317 ORTHO05D002420 1.2e-09 66.2 48 66.7
QL07p046169 Quercus lobata HOM05D002317 ORTHO05D002420 2.1e-09 65.5 48 64.6
Migut.J00387 Erythranthe guttata HOM05D002317 ORTHO05D002420 2.7e-09 65.1 48 64.6
Nitab4.5_0010302g0020 Nicotiana tabacum HOM05D002317 ORTHO05D002420 3.5e-09 64.7 41 85.4
Ciclev10013477m.g Citrus clementina HOM05D002317 ORTHO05D002420 4.6e-09 64.3 48 62.5
Aa31LG5G22700 Aethionema arabicum HOM05D002317 ORTHO05D002420 6.0e-09 63.9 48 64.6
CAN.G1557.3 Capsicum annuum HOM05D002317 ORTHO05D002420 6.0e-09 63.9 48 70.8
BcaB06g28986 Brassica carinata HOM05D002317 ORTHO05D002420 7.8e-09 63.5 50 68.0
DCAR_015242 Daucus carota HOM05D002317 ORTHO05D002420 7.8e-09 63.5 48 70.8
THA.LOC104806596 Tarenaya hassleriana HOM05D002317 ORTHO05D002420 7.8e-09 63.5 48 64.6
TWI53G1649 Tripterygium wilfordii HOM05D002317 ORTHO05D002420 7.8e-09 63.5 48 60.4
Duzib093G0680 Durio zibethinus HOM05D002317 ORTHO05D002420 1.3e-08 62.8 48 62.5
Peaxi162Scf00658g00633 Petunia axillaris HOM05D002317 ORTHO05D002420 1.3e-08 62.8 48 68.8
unitig_0.g1962 Utricularia gibba HOM05D002317 ORTHO05D002420 1.3e-08 62.8 58 62.1
Ca_09590_v3 Cicer arietinum L. HOM05D002317 ORTHO05D002420 1.7e-08 62.4 58 55.2
Psat6g069560 Pisum sativum HOM05D002317 ORTHO05D002420 1.7e-08 62.4 58 53.4
BcaC02g07520 Brassica carinata HOM05D002317 ORTHO05D002420 3.0e-08 61.6 50 66.0
A04p28530 Brassica napus HOM05D002317 ORTHO05D002420 3.0e-08 61.6 50 66.0
C04p65850 Brassica napus HOM05D002317 ORTHO05D002420 3.0e-08 61.6 50 66.0
BolC4t28088H Brassica oleracea HOM05D002317 ORTHO05D002420 3.0e-08 61.6 50 66.0
BraA04t18331Z Brassica rapa HOM05D002317 ORTHO05D002420 3.0e-08 61.6 50 66.0
Potri.016G080900 Populus trichocarpa HOM05D002317 ORTHO05D002420 3.0e-08 61.6 48 58.3
Thecc.05G048000 Theobroma cacao HOM05D002317 ORTHO05D002420 3.0e-08 61.6 47 61.7
Cpa.g.sc114.15 Carica papaya HOM05D002317 ORTHO05D002420 5.1e-08 60.8 48 56.2
PSO339G4555 Papaver somniferum HOM05D002317 ORTHO05D002420 5.1e-08 60.8 48 60.4
PSO384G0295 Papaver somniferum HOM05D002317 ORTHO05D002420 5.1e-08 60.8 48 60.4
TPR.G31960 Trifolium pratense HOM05D002317 ORTHO05D002420 6.6e-08 60.5 57 54.4
Sabra16G0089100 Salix brachista HOM05D002317 ORTHO05D002420 8.7e-08 60.1 48 56.2
Medtr1g067400 Medicago truncatula HOM05D002317 ORTHO05D002420 1.5e-07 59.3 58 51.7
Nn2g12844 Nelumbo nucifera HOM05D002317 ORTHO05D002420 1.5e-07 59.3 48 60.4
BcaB02g09287 Brassica carinata HOM05D002317 ORTHO05D002420 1.9e-07 58.9 48 62.5
BcaNung07146 Brassica carinata HOM05D002317 ORTHO05D002420 1.9e-07 58.9 48 62.5
Solyc04g010220.3 Solanum lycopersicum HOM05D002317 ORTHO05D002420 1.9e-07 58.9 48 68.8
Sopen04g005400 Solanum pennellii HOM05D002317 ORTHO05D002420 1.9e-07 58.9 48 68.8
SGA_v2.0_scaffold126G33857 Striga asiatica HOM05D002317 ORTHO05D002420 2.5e-07 58.5 48 58.3
Lj5g0009891 Lotus japonicus HOM05D002317 ORTHO05D002420 3.3e-07 58.2 58 50.0
Lalb_Chr02g0153331 Lupinus albus HOM05D002317 ORTHO05D002420 4.3e-07 57.8 51 54.9
Duzib128G0545 Durio zibethinus HOM05D002317 ORTHO05D002420 5.6e-07 57.4 48 58.3
Mapoly0007s0083 Marchantia polymorpha HOM05D002317 ORTHO05D002420 5.6e-07 57.4 51 60.8
Atru.chr8.2497 Acer truncatum HOM05D002317 ORTHO05D002420 7.3e-07 57.0 48 58.3
PGR004G1111 Punica granatum HOM05D002317 ORTHO05D002420 1.6e-06 55.8 47 57.4
HPP92_019809 Vanilla planifolia HOM05D002317 ORTHO05D002420 1.6e-06 55.8 47 57.4
BcaC02g11853 Brassica carinata HOM05D002317 ORTHO05D002420 2.1e-06 55.5 48 58.3
A05p08580 Brassica napus HOM05D002317 ORTHO05D002420 2.1e-06 55.5 48 58.3
C04p10670 Brassica napus HOM05D002317 ORTHO05D002420 2.1e-06 55.5 48 58.3
BolC4t22660H Brassica oleracea HOM05D002317 ORTHO05D002420 2.1e-06 55.5 48 58.3
BraA05t19826Z Brassica rapa HOM05D002317 ORTHO05D002420 2.1e-06 55.5 48 58.3
arahy.Tifrunner.gnm1.ann1.GPSB4L Arachis hypogaea HOM05D002317 ORTHO05D002420 4.7e-06 54.3 48 62.5
arahy.Tifrunner.gnm1.ann1.1FT10B Arachis hypogaea HOM05D002317 ORTHO05D002420 6.2e-06 53.9 48 62.5
Nitab4.5_0006800g0020 Nicotiana tabacum HOM05D002317 ORTHO05D002420 6.2e-06 53.9 53 56.6
ClCG04G008600 Citrullus lanatus HOM05D002317 ORTHO05D002420 8.1e-06 53.5 50 54.0


User provided reference genes

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