Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc06g036540.1 Solanum lycopersicum HOM05D003303 ORTHO05D003887 5.4e-34 147.1 76 100.0
Sopen06g012300 Solanum pennellii HOM05D003303 ORTHO05D003887 5.4e-34 147.1 76 100.0
PGSC0003DMG400017130 Solanum tuberosum HOM05D003303 ORTHO05D003887 8.0e-30 133.3 78 92.3
Nitab4.5_0000447g0060 Nicotiana tabacum HOM05D003303 ORTHO05D003887 3.1e-29 131.3 78 89.7
Nitab4.5_0000268g0060 Nicotiana tabacum HOM05D003303 ORTHO05D003887 1.2e-28 129.4 78 88.5
CAN.G340.3 Capsicum annuum HOM05D003303 ORTHO05D003887 2.6e-28 128.3 78 88.5
Peaxi162Scf00603g00012 Petunia axillaris HOM05D003303 ORTHO05D003887 2.0e-25 118.6 79 81.0
MELO3C011249.2 Cucumis melo HOM05D003303 ORTHO05D003887 6.6e-24 113.6 78 71.8
ClCG08G013220 Citrullus lanatus HOM05D003303 ORTHO05D003887 8.6e-24 113.2 78 71.8
CsaV3_2G031950 Cucumis sativus L. HOM05D003303 ORTHO05D003887 8.6e-24 113.2 77 71.4
SGA_v2.0_scaffold64G21909 Striga asiatica HOM05D003303 ORTHO05D003887 8.6e-24 113.2 77 75.3
CiPaw.08G012800 Carya illinoinensis HOM05D003303 ORTHO05D003887 3.3e-23 111.3 78 71.8
MSTRG.25996 Avicennia marina HOM05D003303 ORTHO05D003887 4.3e-23 110.9 78 71.8
SGA_v2.0_scaffold20G09143 Striga asiatica HOM05D003303 ORTHO05D003887 4.3e-23 110.9 77 72.7
Manes.03G016900 Manihot esculenta HOM05D003303 ORTHO05D003887 5.6e-23 110.5 78 73.1
Actinidia22360 Actinidia chinensis HOM05D003303 ORTHO05D003887 7.3e-23 110.2 78 70.5
TAR636G1230 Trochodendron aralioides HOM05D003303 ORTHO05D003887 7.3e-23 110.2 78 69.2
GSVIVG01035826001 Vitis vinifera HOM05D003303 ORTHO05D003887 7.3e-23 110.2 78 70.5
Potri.006G251600 Populus trichocarpa HOM05D003303 ORTHO05D003887 1.2e-22 109.4 78 71.8
Rhsim02G0195600 Rhododendron simsii HOM05D003303 ORTHO05D003887 1.2e-22 109.4 78 70.5
Rhsim02G0198400 Rhododendron simsii HOM05D003303 ORTHO05D003887 1.2e-22 109.4 78 71.8
vmacro11152 Vaccinium macrocarpon HOM05D003303 ORTHO05D003887 1.2e-22 109.4 78 71.8
CANSAT64G2029 Cannabis sativa HOM05D003303 ORTHO05D003887 1.6e-22 109.0 78 70.5
Thecc.09G149800 Theobroma cacao HOM05D002238 ORTHO05D007272 1.6e-22 109.0 78 70.5
Gohir.D08G257300 Gossypium hirsutum HOM05D003303 ORTHO05D003887 2.8e-22 108.2 78 67.9
Hund20355 Selenicereus undatus HOM05D003303 ORTHO05D003887 3.6e-22 107.8 78 74.4
Duzib168G0888 Durio zibethinus HOM05D003303 ORTHO05D003887 4.7e-22 107.5 78 69.2
Gorai.004G274300 Gossypium raimondii HOM05D003303 ORTHO05D003887 4.7e-22 107.5 78 67.9
AL6G21910 Arabidopsis lyrata HOM05D003303 ORTHO05D003887 6.2e-22 107.1 78 67.9
CSS0039322 Camellia sinensis var. sinensis HOM05D003303 ORTHO05D003887 6.2e-22 107.1 78 67.9
Gohir.A08G236700 Gossypium hirsutum HOM05D003303 ORTHO05D003887 6.2e-22 107.1 78 67.9
RcHm_v2.0_Chr6g0298251 Rosa chinensis HOM05D003303 ORTHO05D003887 6.2e-22 107.1 78 70.5
Sabra06G0196600 Salix brachista HOM05D003303 ORTHO05D003887 6.2e-22 107.1 78 70.5
Sed0025998 Sechium edule HOM05D003303 ORTHO05D003887 6.2e-22 107.1 78 67.9
TWI63G1648 Tripterygium wilfordii HOM05D003303 ORTHO05D003887 6.2e-22 107.1 78 71.8
Cc08_g00960 Coffea canephora HOM05D003303 ORTHO05D003887 1.1e-21 106.3 80 66.2
Eucgr.C02806 Eucalyptus grandis HOM05D003303 ORTHO05D003887 1.1e-21 106.3 78 70.5
Thhalv10014677m.g Eutrema salsugineum HOM05D003303 ORTHO05D003887 1.1e-21 106.3 78 66.7
Atru.chr7.2388 Acer truncatum HOM05D003303 ORTHO05D003887 1.4e-21 105.9 78 67.9
AT5G11280 Arabidopsis thaliana HOM05D003303 ORTHO05D003887 1.4e-21 105.9 78 66.7
Migut.E01788 Erythranthe guttata HOM05D003303 ORTHO05D003887 1.4e-21 105.9 78 67.9
Ciclev10009474m.g Citrus clementina HOM05D003303 ORTHO05D003887 1.8e-21 105.5 78 69.2
COL.COLO4_00194 Corchorus olitorius HOM05D003303 ORTHO05D003887 1.8e-21 105.5 78 67.9
Dinv30167 Davidia involucrata HOM05D003303 ORTHO05D003887 1.8e-21 105.5 78 69.2
Aa31LG3G15910 Aethionema arabicum HOM05D003303 ORTHO05D003887 2.3e-21 105.1 78 65.4
MSTRG.1714 Avicennia marina HOM05D003303 ORTHO05D003887 2.3e-21 105.1 78 67.9
Lj8A668G29 Lonicera japonica HOM05D003303 ORTHO05D003887 2.3e-21 105.1 78 66.7
Lj8A679G18 Lonicera japonica HOM05D003303 ORTHO05D003887 2.3e-21 105.1 78 66.7
Sed0002484 Sechium edule HOM05D003303 ORTHO05D003887 2.3e-21 105.1 78 66.7
Oeu024202.1 Olea europaea HOM05D003303 ORTHO05D003887 3.1e-21 104.8 78 69.2
THA.LOC104799228 Tarenaya hassleriana HOM05D003303 ORTHO05D003887 3.1e-21 104.8 78 66.7
BcaC04g19244 Brassica carinata HOM05D003303 ORTHO05D003887 4.0e-21 104.4 78 65.4
C09p65610 Brassica napus HOM05D003303 ORTHO05D003887 4.0e-21 104.4 78 65.4
BolC9t59382H Brassica oleracea HOM05D003303 ORTHO05D003887 4.0e-21 104.4 78 65.4
FvH4_2g29460 Fragaria vesca HOM05D003303 ORTHO05D003887 5.2e-21 104.0 78 67.9
FAN27G1304 Fragaria x ananassa HOM05D003303 ORTHO05D003887 5.2e-21 104.0 78 67.9
Nn2g11966 Nelumbo nucifera HOM05D003303 ORTHO05D003887 5.2e-21 104.0 78 66.7
Eucgr.I00800 Eucalyptus grandis HOM05D003303 ORTHO05D003887 6.8e-21 103.6 78 69.2
Lj1g0001911 Lotus japonicus HOM05D003303 ORTHO05D003887 6.8e-21 103.6 78 69.2
Medtr3g107550 Medicago truncatula HOM05D003303 ORTHO05D003887 6.8e-21 103.6 79 68.4
A03p04940 Brassica napus HOM05D003303 ORTHO05D003887 8.9e-21 103.2 77 64.9
Cpa.g.sc533.1 Carica papaya HOM05D003303 ORTHO05D003887 8.9e-21 103.2 78 69.2
Eucgr.C00336 Eucalyptus grandis HOM05D003303 ORTHO05D003887 8.9e-21 103.2 78 69.2
FAN20G0011 Fragaria x ananassa HOM05D003303 ORTHO05D003887 8.9e-21 103.2 78 67.9
HanXRQChr08g0234811 Helianthus annuus HOM05D003303 ORTHO05D003887 8.9e-21 103.2 78 66.7
Sp6g32280 Schrenkiella parvula HOM05D003303 ORTHO05D003887 8.9e-21 103.2 78 65.4
Actinidia13249 Actinidia chinensis HOM05D003303 ORTHO05D003887 1.2e-20 102.8 78 67.9
ATR1156G058 Amborella trichopoda HOM05D003303 ORTHO05D003887 1.2e-20 102.8 78 66.7
CARHR201980 Cardamine hirsuta HOM05D003303 ORTHO05D003887 1.2e-20 102.8 78 65.4
Hma1.2p1_0000F.1_g000400 Hydrangea macrophylla HOM05D003303 ORTHO05D003887 1.2e-20 102.8 76 67.1
Carub.0006s0975 Capsella rubella HOM05D003303 ORTHO05D003887 1.5e-20 102.4 78 64.1
Ah.12g064040 Amaranthus hybridus HOM05D003303 ORTHO05D003887 2.0e-20 102.1 78 67.9
ECA246G0415 Erigeron canadensis HOM05D003303 ORTHO05D003887 2.0e-20 102.1 78 67.9
Glyma.06G069800 Glycine max HOM05D003303 ORTHO05D003887 3.4e-20 101.3 78 65.4
Nn8g39390 Nelumbo nucifera HOM05D003303 ORTHO05D003887 3.4e-20 101.3 78 62.8
Prupe.1G478100 Prunus persica HOM05D003303 ORTHO05D003887 3.4e-20 101.3 78 67.9
SalBow1G3705 Salvia bowleyana HOM05D003303 ORTHO05D003887 3.4e-20 101.3 78 62.8
Aqoxy7G03733 Aquilegia oxysepala HOM05D003303 ORTHO05D003887 4.4e-20 100.9 78 65.4
AUR62024894 Chenopodium quinoa HOM05D003303 ORTHO05D003887 4.4e-20 100.9 78 69.2
AUR62030643 Chenopodium quinoa HOM05D003303 ORTHO05D003887 4.4e-20 100.9 78 69.2
Glyma.04G068100 Glycine max HOM05D003303 ORTHO05D003887 7.5e-20 100.1 78 64.1
Aqoxy7G02100 Aquilegia oxysepala HOM05D003303 ORTHO05D003887 9.9e-20 99.8 78 61.5
BcaB08g37075 Brassica carinata HOM05D003303 ORTHO05D003887 9.9e-20 99.8 79 64.6
A10p26440 Brassica napus HOM05D003303 ORTHO05D003887 9.9e-20 99.8 79 64.6
BraA10t44701Z Brassica rapa HOM05D003303 ORTHO05D003887 9.9e-20 99.8 79 64.6
Lalb_Chr08g0243991 Lupinus albus HOM05D003303 ORTHO05D003887 9.9e-20 99.8 77 62.3
PGR044G1059 Punica granatum HOM05D003303 ORTHO05D003887 9.9e-20 99.8 78 62.8
EL10Ac2g02608 Beta vulgaris HOM05D003303 ORTHO05D003887 1.3e-19 99.4 78 69.2
TPR.G31761 Trifolium pratense HOM05D003303 ORTHO05D003887 1.7e-19 99.0 79 65.8
Ca_15721_v3 Cicer arietinum L. HOM05D003303 ORTHO05D003887 2.2e-19 98.6 79 65.8
Lalb_Chr23g0268741 Lupinus albus HOM05D003303 ORTHO05D003887 2.9e-19 98.2 78 64.1
Sc09g0008410 Simmondsia chinensis HOM05D003303 ORTHO05D003887 2.9e-19 98.2 78 64.1
TWI34G1555 Tripterygium wilfordii HOM05D003303 ORTHO05D003887 2.9e-19 98.2 78 65.4
VMungo1309G1624 Vigna mungo HOM05D003303 ORTHO05D003887 2.9e-19 98.2 78 65.4
Phvul.009G094400 Phaseolus vulgaris HOM05D003303 ORTHO05D003887 3.7e-19 97.8 78 65.4
BcaB01g06298 Brassica carinata HOM05D003303 ORTHO05D003887 1.1e-18 96.3 79 63.3
DCAR_006232 Daucus carota HOM05D003303 ORTHO05D003887 1.9e-18 95.5 78 62.8
Psat5g028480 Pisum sativum HOM05D003303 ORTHO05D003887 1.9e-18 95.5 80 63.8
arahy.Tifrunner.gnm1.ann1.CWZP7X Arachis hypogaea HOM05D003303 ORTHO05D003887 4.1e-18 94.4 79 64.6
arahy.Tifrunner.gnm1.ann1.DJG6PN Arachis hypogaea HOM05D003303 ORTHO05D003887 4.1e-18 94.4 79 64.6
CDE05G1646 Ceratophyllum demersum HOM05D003303 ORTHO05D003887 4.1e-18 94.4 78 61.5
MD15G1123100 Malus domestica HOM05D003303 ORTHO05D003887 5.4e-18 94.0 80 66.2
HPP92_023167 Vanilla planifolia HOM05D003303 ORTHO05D003887 1.6e-17 92.4 79 63.3
SEGI_05060 Sequoiadendron giganteum HOM05D003303 ORTHO05D003887 2.7e-17 91.7 78 65.4
Lsat_1_v5_gn_5_30500 Lactuca sativa HOM05D003303 ORTHO05D003887 4.6e-17 90.9 77 63.6
PSO210G5012 Papaver somniferum HOM05D003303 ORTHO05D003887 1.3e-16 89.4 78 60.3
PSO210G7678 Papaver somniferum HOM05D003303 ORTHO05D003887 1.3e-16 89.4 78 60.3
Zm00001eb342310 Zea mays HOM05D003303 ORTHO05D003887 1.1e-15 86.3 78 55.1
Os01g0555300 Oryza sativa ssp. japonica HOM05D003303 ORTHO05D003887 1.9e-15 85.5 78 51.3
Zm00001eb162550 Zea mays HOM05D003303 ORTHO05D003887 2.5e-15 85.1 78 52.6
SMO358G0079 Selaginella moellendorffii HOM05D003303 ORTHO05D003887 9.9e-12 73.2 75 54.7
BcaB01g06290 Brassica carinata HOM05D003303 ORTHO05D003887 2.2e-11 72.0 50 68.0
CDE05G2985 Ceratophyllum demersum HOM05D003303 ORTHO05D003887 3.8e-11 71.2 75 50.7
Oeu031686.1 Olea europaea HOM05D003303 ORTHO05D003887 1.4e-10 69.3 63 60.3
AagrBONN_evm.TU.Sc2ySwM_228.3014 Anthoceros agrestis HOM05D003303 ORTHO05D003887 4.1e-10 67.8 79 48.1
TPR.G31765 Trifolium pratense HOM05D003303 ORTHO05D003887 4.6e-09 64.3 84 48.8
CiPaw.01G244800 Carya illinoinensis HOM05D003303 ORTHO05D003887 3.0e-08 61.6 75 40.0
Eucgr.J01775 Eucalyptus grandis HOM05D003303 ORTHO05D003887 6.6e-08 60.5 78 46.2
Mapoly0048s0064 Marchantia polymorpha HOM05D003303 ORTHO05D003887 8.7e-08 60.1 77 45.5
Atru.chr1.3071 Acer truncatum HOM05D003303 ORTHO05D003887 4.3e-07 57.8 77 44.2
GSVIVG01017270001 Vitis vinifera HOM05D003948 ORTHO05D004610 7.3e-07 57.0 57 43.9
Duzib235G1292 Durio zibethinus HOM05D003303 ORTHO05D003887 9.6e-07 56.6 78 43.6
Thecc.06G071200 Theobroma cacao HOM05D003303 ORTHO05D003887 9.6e-07 56.6 62 45.2
Gohir.A10G076100 Gossypium hirsutum HOM05D003303 ORTHO05D003887 1.2e-06 56.2 67 41.8
Manes.11G053300 Manihot esculenta HOM05D003303 ORTHO05D003887 1.2e-06 56.2 73 39.7
Oeu006259.1 Olea europaea HOM05D003303 ORTHO05D003887 1.2e-06 56.2 46 63.0
Gohir.D10G075451 Gossypium hirsutum HOM05D003303 ORTHO05D003887 2.8e-06 55.1 67 40.3
Gorai.011G081400 Gossypium raimondii HOM05D003303 ORTHO05D003887 2.8e-06 55.1 67 40.3
CANSAT56G3409 Cannabis sativa HOM05D003303 ORTHO05D003887 4.7e-06 54.3 66 40.9


User provided reference genes

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