Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc06g036520.1 Solanum lycopersicum HOM05D003303 ORTHO05D003887 6.1e-32 140.2 70 100.0
Sopen06g012300 Solanum pennellii HOM05D003303 ORTHO05D003887 9.7e-30 132.9 67 100.0
PGSC0003DMG400017130 Solanum tuberosum HOM05D003303 ORTHO05D003887 1.2e-27 125.9 67 97.0
Nitab4.5_0000447g0060 Nicotiana tabacum HOM05D003303 ORTHO05D003887 7.7e-27 123.2 67 94.0
CAN.G340.3 Capsicum annuum HOM05D003303 ORTHO05D003887 3.8e-26 120.9 67 91.0
Peaxi162Scf00603g00012 Petunia axillaris HOM05D003303 ORTHO05D003887 1.6e-24 115.5 67 85.1
Cc08_g00960 Coffea canephora HOM05D003303 ORTHO05D003887 5.1e-23 110.5 67 80.6
Aqoxy7G03733 Aquilegia oxysepala HOM05D003303 ORTHO05D003887 1.1e-22 109.4 67 80.6
vmacro11152 Vaccinium macrocarpon HOM05D003303 ORTHO05D003887 3.3e-22 107.8 67 80.6
Sabra06G0196600 Salix brachista HOM05D003303 ORTHO05D003887 4.4e-22 107.5 67 79.1
Nn8g39390 Nelumbo nucifera HOM05D003303 ORTHO05D003887 7.4e-22 106.7 67 79.1
Rhsim02G0195600 Rhododendron simsii HOM05D003303 ORTHO05D003887 9.7e-22 106.3 67 79.1
TWI63G1648 Tripterygium wilfordii HOM05D003303 ORTHO05D003887 9.7e-22 106.3 67 74.6
Rhsim02G0198400 Rhododendron simsii HOM05D003303 ORTHO05D003887 1.3e-21 105.9 67 79.1
Sed0025998 Sechium edule HOM05D003303 ORTHO05D003887 1.3e-21 105.9 67 76.1
Aa31LG3G15910 Aethionema arabicum HOM05D003303 ORTHO05D003887 1.7e-21 105.5 67 74.6
Dinv30167 Davidia involucrata HOM05D003303 ORTHO05D003887 1.7e-21 105.5 67 76.1
Lj8A668G29 Lonicera japonica HOM05D003303 ORTHO05D003887 1.7e-21 105.5 67 74.6
Lj8A679G18 Lonicera japonica HOM05D003303 ORTHO05D003887 1.7e-21 105.5 67 74.6
Nn2g11966 Nelumbo nucifera HOM05D003303 ORTHO05D003887 1.7e-21 105.5 67 77.6
THA.LOC104799228 Tarenaya hassleriana HOM05D003303 ORTHO05D003887 1.7e-21 105.5 67 73.1
CANSAT64G2029 Cannabis sativa HOM05D003303 ORTHO05D003887 2.2e-21 105.1 67 74.6
Cpa.g.sc533.1 Carica papaya HOM05D003303 ORTHO05D003887 2.2e-21 105.1 67 71.6
CsaV3_2G031950 Cucumis sativus L. HOM05D003303 ORTHO05D003887 2.2e-21 105.1 67 74.6
CARHR201980 Cardamine hirsuta HOM05D003303 ORTHO05D003887 2.8e-21 104.8 67 74.6
Duzib168G0888 Durio zibethinus HOM05D003303 ORTHO05D003887 2.8e-21 104.8 67 73.1
Nitab4.5_0000268g0060 Nicotiana tabacum HOM05D003303 ORTHO05D003887 2.8e-21 104.8 56 92.9
Potri.006G251600 Populus trichocarpa HOM05D003303 ORTHO05D003887 2.8e-21 104.8 67 76.1
MSTRG.25996 Avicennia marina HOM05D003303 ORTHO05D003887 3.7e-21 104.4 67 74.6
Sed0002484 Sechium edule HOM05D003303 ORTHO05D003887 3.7e-21 104.4 67 73.1
AL6G21910 Arabidopsis lyrata HOM05D003303 ORTHO05D003887 4.8e-21 104.0 67 74.6
AT5G11280 Arabidopsis thaliana HOM05D003303 ORTHO05D003887 4.8e-21 104.0 67 74.6
ClCG08G013220 Citrullus lanatus HOM05D003303 ORTHO05D003887 4.8e-21 104.0 67 71.6
Thhalv10014677m.g Eutrema salsugineum HOM05D003303 ORTHO05D003887 4.8e-21 104.0 67 73.1
FvH4_2g29460 Fragaria vesca HOM05D003303 ORTHO05D003887 4.8e-21 104.0 67 73.1
Oeu024202.1 Olea europaea HOM05D003303 ORTHO05D003887 4.8e-21 104.0 67 71.6
Carub.0006s0975 Capsella rubella HOM05D003303 ORTHO05D003887 6.3e-21 103.6 67 71.6
Prupe.1G478100 Prunus persica HOM05D003303 ORTHO05D003887 6.3e-21 103.6 67 73.1
MELO3C011249.2 Cucumis melo HOM05D003303 ORTHO05D003887 8.2e-21 103.2 67 73.1
TAR636G1230 Trochodendron aralioides HOM05D003303 ORTHO05D003887 8.2e-21 103.2 67 76.1
SGA_v2.0_scaffold20G09143 Striga asiatica HOM05D003303 ORTHO05D003887 1.1e-20 102.8 67 70.1
TPR.G31761 Trifolium pratense HOM05D003303 ORTHO05D003887 1.1e-20 102.8 67 68.7
Ca_15721_v3 Cicer arietinum L. HOM05D003303 ORTHO05D003887 1.4e-20 102.4 67 73.1
Hma1.2p1_0000F.1_g000400 Hydrangea macrophylla HOM05D003303 ORTHO05D003887 1.4e-20 102.4 67 76.1
TWI34G1555 Tripterygium wilfordii HOM05D003303 ORTHO05D003887 1.4e-20 102.4 67 70.1
Ciclev10009474m.g Citrus clementina HOM05D003303 ORTHO05D003887 1.8e-20 102.1 67 71.6
RcHm_v2.0_Chr6g0298251 Rosa chinensis HOM05D003303 ORTHO05D003887 1.8e-20 102.1 67 73.1
Sp6g32280 Schrenkiella parvula HOM05D003303 ORTHO05D003887 1.8e-20 102.1 67 71.6
GSVIVG01035826001 Vitis vinifera HOM05D003303 ORTHO05D003887 1.8e-20 102.1 67 70.1
Actinidia13249 Actinidia chinensis HOM05D003303 ORTHO05D003887 2.4e-20 101.7 67 73.1
arahy.Tifrunner.gnm1.ann1.CWZP7X Arachis hypogaea HOM05D003303 ORTHO05D003887 2.4e-20 101.7 67 74.6
COL.COLO4_00194 Corchorus olitorius HOM05D003303 ORTHO05D003887 2.4e-20 101.7 67 70.1
Glyma.06G069800 Glycine max HOM05D003303 ORTHO05D003887 2.4e-20 101.7 67 74.6
Migut.E01788 Erythranthe guttata HOM05D003303 ORTHO05D003887 3.1e-20 101.3 67 71.6
Thecc.09G149800 Theobroma cacao HOM05D002238 ORTHO05D007272 3.1e-20 101.3 67 70.1
FAN20G0011 Fragaria x ananassa HOM05D003303 ORTHO05D003887 4.1e-20 100.9 67 71.6
Lalb_Chr23g0268741 Lupinus albus HOM05D003303 ORTHO05D003887 4.1e-20 100.9 67 71.6
Medtr3g107550 Medicago truncatula HOM05D003303 ORTHO05D003887 5.3e-20 100.5 67 68.7
Psat5g028480 Pisum sativum HOM05D003303 ORTHO05D003887 5.3e-20 100.5 67 70.1
CiPaw.08G012800 Carya illinoinensis HOM05D003303 ORTHO05D003887 6.9e-20 100.1 67 73.1
FAN27G1304 Fragaria x ananassa HOM05D003303 ORTHO05D003887 6.9e-20 100.1 67 70.1
Manes.03G016900 Manihot esculenta HOM05D003303 ORTHO05D003887 6.9e-20 100.1 67 70.1
VMungo1309G1624 Vigna mungo HOM05D003303 ORTHO05D003887 6.9e-20 100.1 67 73.1
Atru.chr7.2388 Acer truncatum HOM05D003303 ORTHO05D003887 9.1e-20 99.8 67 71.6
arahy.Tifrunner.gnm1.ann1.DJG6PN Arachis hypogaea HOM05D003303 ORTHO05D003887 9.1e-20 99.8 67 73.1
A10p26440 Brassica napus HOM05D003303 ORTHO05D003887 9.1e-20 99.8 67 70.1
BraA10t44701Z Brassica rapa HOM05D003303 ORTHO05D003887 9.1e-20 99.8 67 70.1
SGA_v2.0_scaffold64G21909 Striga asiatica HOM05D003303 ORTHO05D003887 9.1e-20 99.8 67 68.7
Glyma.04G068100 Glycine max HOM05D003303 ORTHO05D003887 1.2e-19 99.4 67 73.1
BolC9t59382H Brassica oleracea HOM05D003303 ORTHO05D003887 1.5e-19 99.0 67 68.7
Phvul.009G094400 Phaseolus vulgaris HOM05D003303 ORTHO05D003887 1.5e-19 99.0 67 73.1
BcaB08g37075 Brassica carinata HOM05D003303 ORTHO05D003887 2.0e-19 98.6 67 68.7
Gohir.A08G236700 Gossypium hirsutum HOM05D003303 ORTHO05D003887 2.0e-19 98.6 67 68.7
PSO210G5012 Papaver somniferum HOM05D003303 ORTHO05D003887 2.0e-19 98.6 67 73.1
SalBow1G3705 Salvia bowleyana HOM05D003303 ORTHO05D003887 2.0e-19 98.6 67 70.1
MD15G1123100 Malus domestica HOM05D003303 ORTHO05D003887 2.6e-19 98.2 67 73.1
BcaC04g19244 Brassica carinata HOM05D003303 ORTHO05D003887 3.4e-19 97.8 67 67.2
C09p65610 Brassica napus HOM05D003303 ORTHO05D003887 3.4e-19 97.8 67 67.2
Gohir.D08G257300 Gossypium hirsutum HOM05D003303 ORTHO05D003887 3.4e-19 97.8 67 68.7
Gorai.004G274300 Gossypium raimondii HOM05D003303 ORTHO05D003887 5.9e-19 97.1 67 68.7
CSS0039322 Camellia sinensis var. sinensis HOM05D003303 ORTHO05D003887 7.7e-19 96.7 67 71.6
Eucgr.C02806 Eucalyptus grandis HOM05D003303 ORTHO05D003887 1.7e-18 95.5 67 68.7
Lj1g0001911 Lotus japonicus HOM05D003303 ORTHO05D003887 1.7e-18 95.5 67 71.6
HPP92_023167 Vanilla planifolia HOM05D003303 ORTHO05D003887 1.7e-18 95.5 67 61.2
Aqoxy7G02100 Aquilegia oxysepala HOM05D003303 ORTHO05D003887 3.8e-18 94.4 67 65.7
unitig_748.g7560 Utricularia gibba HOM05D000120 ORTHO05D000068 5.0e-18 94.0 67 64.2
Actinidia22360 Actinidia chinensis HOM05D003303 ORTHO05D003887 1.1e-17 92.8 67 67.2
MSTRG.1714 Avicennia marina HOM05D003303 ORTHO05D003887 1.1e-17 92.8 67 65.7
Lalb_Chr08g0243991 Lupinus albus HOM05D003303 ORTHO05D003887 1.1e-17 92.8 67 62.7
Sc09g0008410 Simmondsia chinensis HOM05D003303 ORTHO05D003887 7.2e-17 90.1 67 65.7
PGR044G1059 Punica granatum HOM05D003303 ORTHO05D003887 9.4e-17 89.7 67 65.7
ATR1156G058 Amborella trichopoda HOM05D003303 ORTHO05D003887 1.6e-16 89.0 67 59.7
DCAR_006232 Daucus carota HOM05D003303 ORTHO05D003887 1.6e-16 89.0 67 59.7
MD17G1206100 Malus domestica HOM05D003303 ORTHO05D003887 1.6e-16 89.0 67 65.7
Zm00001eb162550 Zea mays HOM05D003303 ORTHO05D003887 2.1e-16 88.6 67 61.2
Zm00001eb342310 Zea mays HOM05D003303 ORTHO05D003887 3.6e-16 87.8 67 61.2
Thecc.06G071200 Theobroma cacao HOM05D003303 ORTHO05D003887 4.7e-16 87.4 67 59.7
Lsat_1_v5_gn_5_30500 Lactuca sativa HOM05D003303 ORTHO05D003887 6.1e-16 87.0 67 61.2
Prupe.3G081000 Prunus persica HOM05D003948 ORTHO05D004610 8.0e-16 86.7 67 64.2
AUR62024894 Chenopodium quinoa HOM05D003303 ORTHO05D003887 1.0e-15 86.3 67 58.2
AUR62030643 Chenopodium quinoa HOM05D003303 ORTHO05D003887 1.0e-15 86.3 67 58.2
EL10Ac2g02608 Beta vulgaris HOM05D003303 ORTHO05D003887 1.4e-15 85.9 67 58.2
Os01g0555300 Oryza sativa ssp. japonica HOM05D003303 ORTHO05D003887 1.8e-15 85.5 67 61.2
Hund20355 Selenicereus undatus HOM05D003303 ORTHO05D003887 1.8e-15 85.5 67 59.7
CDE05G2985 Ceratophyllum demersum HOM05D003303 ORTHO05D003887 2.3e-15 85.1 67 56.7
Hma1.2p1_0515F.1_g170230 Hydrangea macrophylla HOM05D003303 ORTHO05D003887 3.0e-15 84.7 67 58.2
AUR62011554 Chenopodium quinoa HOM05D003303 ORTHO05D003887 3.9e-15 84.3 67 56.7
AUR62016373 Chenopodium quinoa HOM05D003303 ORTHO05D003887 3.9e-15 84.3 67 56.7
Duzib235G1292 Durio zibethinus HOM05D003303 ORTHO05D003887 3.9e-15 84.3 67 55.2
HanXRQChr08g0234811 Helianthus annuus HOM05D003303 ORTHO05D003887 3.9e-15 84.3 67 59.7
CiPaw.01G244800 Carya illinoinensis HOM05D003303 ORTHO05D003887 5.2e-15 84.0 67 56.7
ECA246G0415 Erigeron canadensis HOM05D003303 ORTHO05D003887 5.2e-15 84.0 67 59.7
CDE05G1646 Ceratophyllum demersum HOM05D003303 ORTHO05D003887 6.7e-15 83.6 67 56.7
PSO210G7678 Papaver somniferum HOM05D003303 ORTHO05D003887 1.1e-14 82.8 67 64.2
COL.COLO4_12906 Corchorus olitorius HOM05D003303 ORTHO05D003887 1.5e-14 82.4 67 58.2
Ah.12g064040 Amaranthus hybridus HOM05D003303 ORTHO05D003887 3.3e-14 81.3 67 55.2
BcaB01g06298 Brassica carinata HOM05D003303 ORTHO05D003887 3.3e-14 81.3 62 64.5
Gohir.A10G076100 Gossypium hirsutum HOM05D003303 ORTHO05D003887 3.3e-14 81.3 67 53.7
Gorai.011G081400 Gossypium raimondii HOM05D003303 ORTHO05D003887 4.4e-14 80.9 67 53.7
Glyma.07G032100 Glycine max HOM05D003303 ORTHO05D003887 3.7e-13 77.8 67 58.2
Sc10g0005730 Simmondsia chinensis HOM05D003303 ORTHO05D003887 3.7e-13 77.8 67 55.2
Cpa.g.sc10.225 Carica papaya HOM05D003303 ORTHO05D003887 6.3e-13 77.0 67 50.7
Manes.11G053300 Manihot esculenta HOM05D003303 ORTHO05D003887 6.3e-13 77.0 67 53.7
EL10Ac9g21935 Beta vulgaris HOM05D003303 ORTHO05D003887 1.1e-12 76.3 67 53.7
Lj9A502G37 Lonicera japonica HOM05D003303 ORTHO05D003887 1.1e-12 76.3 67 50.7
PGR102G3177 Punica granatum HOM05D003303 ORTHO05D003887 1.4e-12 75.9 67 53.7
SEGI_05060 Sequoiadendron giganteum HOM05D003303 ORTHO05D003887 1.8e-12 75.5 67 56.7
A03p04940 Brassica napus HOM05D003303 ORTHO05D003887 2.4e-12 75.1 50 66.0
VMungo0331G0053 Vigna mungo HOM05D003303 ORTHO05D003887 4.1e-12 74.3 67 53.7
arahy.Tifrunner.gnm1.ann1.83LFDZ Arachis hypogaea HOM05D003303 ORTHO05D003887 9.1e-12 73.2 67 56.7
arahy.Tifrunner.gnm1.ann1.M6130S Arachis hypogaea HOM05D003303 ORTHO05D003887 9.1e-12 73.2 67 56.7
QL05p027917 Quercus lobata HOM05D003303 ORTHO05D003887 2.6e-11 71.6 55 58.2
Dinv38100 Davidia involucrata HOM05D003303 ORTHO05D003887 3.5e-11 71.2 54 57.4
ECA234G0613 Erigeron canadensis HOM05D003303 ORTHO05D003887 4.5e-11 70.9 67 44.8
Medtr4g011110 Medicago truncatula HOM05D003303 ORTHO05D003887 4.5e-11 70.9 67 52.2
Oeu038358.1 Olea europaea HOM05D003303 ORTHO05D003887 5.9e-11 70.5 67 50.7
Lsat_1_v5_gn_5_132480 Lactuca sativa HOM05D003303 ORTHO05D003887 7.7e-11 70.1 67 47.8
Lj3g0010686 Lotus japonicus HOM05D003303 ORTHO05D003887 7.7e-11 70.1 67 50.7
Lj4g0012531 Lotus japonicus HOM05D003303 ORTHO05D003887 7.7e-11 70.1 67 50.7
Atru.chr1.3071 Acer truncatum HOM05D003303 ORTHO05D003887 1.0e-10 69.7 67 52.2
GSVIVG01017270001 Vitis vinifera HOM05D003948 ORTHO05D004610 1.3e-10 69.3 53 60.4
HanXRQChr10g0303091 Helianthus annuus HOM05D003303 ORTHO05D003887 2.2e-10 68.6 67 46.3
Potri.003G061800 Populus trichocarpa HOM05D003948 ORTHO05D004610 2.2e-10 68.6 67 49.3
Aa31LG4G490 Aethionema arabicum HOM05D003303 ORTHO05D003887 3.8e-10 67.8 68 47.1
Eucgr.J01775 Eucalyptus grandis HOM05D003303 ORTHO05D003887 6.5e-10 67.0 52 63.5
Nitab4.5_0002257g0020 Nicotiana tabacum HOM05D003303 ORTHO05D003887 6.5e-10 67.0 67 49.3
Sabra03G0036000 Salix brachista HOM05D003303 ORTHO05D003887 6.5e-10 67.0 67 46.3
Nitab4.5_0006574g0030 Nicotiana tabacum HOM05D003303 ORTHO05D003887 1.1e-09 66.2 67 47.8
Sed0026368 Sechium edule HOM05D003303 ORTHO05D003887 1.1e-09 66.2 67 46.3
Sp5g35610 Schrenkiella parvula HOM05D004715 ORTHO05D005644 4.2e-09 64.3 68 45.6
CSS0042620 Camellia sinensis var. sinensis HOM05D003303 ORTHO05D003887 9.4e-09 63.2 68 42.6
RcHm_v2.0_Chr2g0136501 Rosa chinensis HOM05D003303 ORTHO05D003887 9.4e-09 63.2 65 44.6
Ciclev10026958m.g Citrus clementina HOM05D003303 ORTHO05D003887 1.6e-08 62.4 67 47.8
Ciclev10027336m.g Citrus clementina HOM05D003303 ORTHO05D003887 1.6e-08 62.4 66 47.0
Eucgr.F02546 Eucalyptus grandis HOM05D003303 ORTHO05D003887 1.6e-08 62.4 53 50.9
TWI18G1198 Tripterygium wilfordii HOM05D003303 ORTHO05D003887 2.1e-08 62.0 55 43.6
FvH4_6g30260 Fragaria vesca HOM05D003303 ORTHO05D003887 2.7e-08 61.6 65 43.1
FAN14G0295 Fragaria x ananassa HOM05D003948 ORTHO05D004610 2.7e-08 61.6 65 43.1
Gohir.D10G075451 Gossypium hirsutum HOM05D003303 ORTHO05D003887 2.7e-08 61.6 67 44.8
Solyc03g116470.2 Solanum lycopersicum HOM05D003303 ORTHO05D003887 2.7e-08 61.6 67 43.3
Sopen03g035360 Solanum pennellii HOM05D003303 ORTHO05D003887 2.7e-08 61.6 67 43.3
Peaxi162Scf00274g00860 Petunia axillaris HOM05D003303 ORTHO05D003887 3.6e-08 61.2 67 44.8
Psat7g255680 Pisum sativum HOM05D003303 ORTHO05D003887 3.6e-08 61.2 62 48.4
PGSC0003DMG401000630 Solanum tuberosum HOM05D003303 ORTHO05D003887 8.0e-08 60.1 67 43.3
BcaC03g15993 Brassica carinata HOM05D003303 ORTHO05D003887 1.4e-07 59.3 71 42.3
BcaC02g10780 Brassica carinata HOM05D003303 ORTHO05D003887 2.3e-07 58.5 71 42.3
C02p37480 Brassica napus HOM05D003303 ORTHO05D003887 2.3e-07 58.5 71 42.3
C04p25150 Brassica napus HOM05D003303 ORTHO05D003887 2.3e-07 58.5 71 42.3
BolC4t24019H Brassica oleracea HOM05D003303 ORTHO05D003887 2.3e-07 58.5 71 42.3
SMO358G0079 Selaginella moellendorffii HOM05D003303 ORTHO05D003887 2.3e-07 58.5 67 47.8
FAN02G3756 Fragaria x ananassa HOM05D003948 ORTHO05D004610 3.0e-07 58.2 65 41.5
FAN05G4627 Fragaria x ananassa HOM05D003948 ORTHO05D004610 3.0e-07 58.2 65 41.5
CANSAT56G3409 Cannabis sativa HOM05D003303 ORTHO05D003887 6.7e-07 57.0 68 39.7
Cc04_g04060 Coffea canephora HOM05D003948 ORTHO05D004610 8.8e-07 56.6 67 40.3
Migut.I00799 Erythranthe guttata HOM05D003303 ORTHO05D003887 8.8e-07 56.6 67 41.8
ClCG09G002740 Citrullus lanatus HOM05D003303 ORTHO05D003887 1.5e-06 55.8 49 44.9
BcaB01g06323 Brassica carinata HOM05D003303 ORTHO05D000019 2.6e-06 55.1 29 82.8
DCAR_016254 Daucus carota HOM05D003303 ORTHO05D003887 2.6e-06 55.1 67 43.3
Rhsim07G0181000 Rhododendron simsii HOM05D003303 ORTHO05D003887 3.3e-06 54.7 67 40.3
CsaV3_7G032600 Cucumis sativus L. HOM05D003303 ORTHO05D003887 7.5e-06 53.5 67 37.3
MELO3C029252.2 Cucumis melo HOM05D003303 ORTHO05D003887 9.7e-06 53.1 67 37.3


User provided reference genes

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