Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc06g036350.3 Solanum lycopersicum HOM05D004003 ORTHO05D004595 3.9e-96 354.8 176 100.0
Sopen06g012130 Solanum pennellii HOM05D004003 ORTHO05D004595 2.0e-95 352.4 176 99.4
PGSC0003DMG400028905 Solanum tuberosum HOM05D004003 ORTHO05D004595 1.8e-93 345.9 176 97.2
Sopen03g003590 Solanum pennellii HOM05D004003 ORTHO05D004595 3.3e-87 325.1 176 92.0
Solyc03g007660.4 Solanum lycopersicum HOM05D004003 ORTHO05D004595 7.4e-87 323.9 176 91.5
Nitab4.5_0011314g0010 Nicotiana tabacum HOM05D004003 ORTHO05D004595 1.4e-85 319.7 176 89.2
CAN.G126.15 Capsicum annuum HOM05D004003 ORTHO05D004595 7.0e-85 317.4 176 90.3
Peaxi162Scf00444g00034 Petunia axillaris HOM05D004003 ORTHO05D004595 3.8e-83 311.6 176 86.9
Oeu061668.1 Olea europaea HOM05D004003 ORTHO05D004595 3.0e-80 302.0 177 84.7
Nitab4.5_0000472g0260 Nicotiana tabacum HOM05D004003 ORTHO05D004595 6.7e-80 300.8 157 91.7
Cc02_g02230 Coffea canephora HOM05D004003 ORTHO05D004595 1.2e-79 300.1 179 83.8
Migut.F01081 Erythranthe guttata HOM05D004003 ORTHO05D004595 1.3e-78 296.6 179 82.1
Oeu003331.1 Olea europaea HOM05D004003 ORTHO05D004595 2.4e-77 292.4 178 83.1
MSTRG.8697 Avicennia marina HOM05D004003 ORTHO05D004595 3.1e-77 292.0 179 79.9
SGA_v2.0_scaffold10G05280 Striga asiatica HOM05D004003 ORTHO05D004595 2.0e-76 289.3 179 82.7
DCAR_010652 Daucus carota HOM05D004003 ORTHO05D004595 2.5e-74 282.3 173 79.2
HanXRQChr15g0494181 Helianthus annuus HOM05D004003 ORTHO05D004595 1.6e-73 279.6 169 81.7
CSS0000705 Camellia sinensis var. sinensis HOM05D004003 ORTHO05D004595 2.1e-73 279.3 178 80.9
Lsat_1_v5_gn_9_56860 Lactuca sativa HOM05D004003 ORTHO05D004595 8.0e-73 277.3 169 80.5
SalBow2G3526 Salvia bowleyana HOM05D004003 ORTHO05D004595 1.0e-72 276.9 179 76.5
Actinidia08590 Actinidia chinensis HOM05D004003 ORTHO05D004595 1.4e-72 276.6 177 81.4
EL10Ac2g03211 Beta vulgaris HOM05D004003 ORTHO05D004595 2.3e-72 275.8 175 78.9
Hma1.2p1_1713F.1_g298900 Hydrangea macrophylla HOM05D004003 ORTHO05D004595 5.2e-72 274.6 173 80.9
unitig_0.g1158 Utricularia gibba HOM05D004003 ORTHO05D004595 6.8e-72 274.2 156 85.3
Hund13071 Selenicereus undatus HOM05D004003 ORTHO05D004595 2.0e-71 272.7 175 78.3
Actinidia31844 Actinidia chinensis HOM05D004003 ORTHO05D004595 2.6e-71 272.3 170 80.0
Rhsim03G0192400 Rhododendron simsii HOM05D004003 ORTHO05D004595 4.4e-71 271.6 173 79.8
ECA232G1033 Erigeron canadensis HOM05D004003 ORTHO05D004595 5.7e-71 271.2 171 77.2
Lj1A1007T57 Lonicera japonica HOM05D004003 ORTHO05D004595 7.5e-71 270.8 181 77.9
Lj1A1007T58 Lonicera japonica HOM05D004003 ORTHO05D004595 7.5e-71 270.8 181 77.9
Ah.11g045360 Amaranthus hybridus HOM05D004003 ORTHO05D004595 1.3e-70 270.0 163 82.2
Lsat_1_v5_gn_2_131500 Lactuca sativa HOM05D004003 ORTHO05D004595 1.3e-70 270.0 176 78.4
Sc14g0006860 Simmondsia chinensis HOM05D004003 ORTHO05D004595 1.3e-70 270.0 175 77.7
Gohir.D11G013100 Gossypium hirsutum HOM05D004003 ORTHO05D004595 6.3e-70 267.7 175 77.1
Duzib205G1856 Durio zibethinus HOM05D004003 ORTHO05D004595 1.1e-69 266.9 175 77.1
Duzib084G0289 Durio zibethinus HOM05D004003 ORTHO05D004595 1.4e-69 266.5 171 78.4
GSVIVG01028820001 Vitis vinifera HOM05D004003 ORTHO05D004595 1.4e-69 266.5 175 77.1
Thecc.03G186200 Theobroma cacao HOM05D004003 ORTHO05D004595 1.8e-69 266.2 175 77.7
Actinidia03142 Actinidia chinensis HOM05D004003 ORTHO05D004595 2.4e-69 265.8 170 78.8
Dinv35269 Davidia involucrata HOM05D004003 ORTHO05D004595 2.4e-69 265.8 162 80.9
COL.COLO4_30289 Corchorus olitorius HOM05D004003 ORTHO05D004595 3.1e-69 265.4 176 76.7
Atru.chr1.335 Acer truncatum HOM05D004003 ORTHO05D004595 5.4e-69 264.6 175 76.0
Rhsim09G0201100 Rhododendron simsii HOM05D004003 ORTHO05D004595 7.0e-69 264.2 178 75.8
Gohir.A11G012800 Gossypium hirsutum HOM05D004003 ORTHO05D004595 1.2e-68 263.5 175 75.4
Aqoxy7G00202 Aquilegia oxysepala HOM05D004003 ORTHO05D004595 2.7e-68 262.3 175 76.0
Lj2g0001989 Lotus japonicus HOM05D004003 ORTHO05D004595 2.7e-68 262.3 175 76.0
Lalb_Chr19g0130491 Lupinus albus HOM05D004003 ORTHO05D004595 2.7e-68 262.3 174 75.9
ECA233G0998 Erigeron canadensis HOM05D004003 ORTHO05D004595 4.5e-68 261.5 167 80.8
CiPaw.06G004300 Carya illinoinensis HOM05D004003 ORTHO05D004595 5.9e-68 261.2 175 75.4
Gorai.008G273600 Gossypium raimondii HOM05D004003 ORTHO05D004595 5.9e-68 261.2 175 74.9
Sed0014667 Sechium edule HOM05D004003 ORTHO05D004595 5.9e-68 261.2 166 77.7
AUR62037745 Chenopodium quinoa HOM05D004003 ORTHO05D004595 1.7e-67 259.6 170 76.5
Gorai.007G013400 Gossypium raimondii HOM05D004003 ORTHO05D004595 1.7e-67 259.6 177 75.7
QL09p012375 Quercus lobata HOM05D004003 ORTHO05D004595 1.7e-67 259.6 175 74.9
Ciclev10006072m.g Citrus clementina HOM05D004003 ORTHO05D004595 2.9e-67 258.8 175 75.4
Eucgr.A02717 Eucalyptus grandis HOM05D004003 ORTHO05D004595 2.9e-67 258.8 175 73.1
Lalb_Chr03g0034981 Lupinus albus HOM05D004003 ORTHO05D004595 2.9e-67 258.8 174 75.9
DCAR_020275 Daucus carota HOM05D004003 ORTHO05D004595 3.8e-67 258.5 154 81.2
THA.LOC104800278 Tarenaya hassleriana HOM05D004003 ORTHO05D004595 3.8e-67 258.5 173 75.7
arahy.Tifrunner.gnm1.ann1.SB31NP Arachis hypogaea HOM05D004003 ORTHO05D004595 5.0e-67 258.1 175 76.0
Gohir.D12G255500 Gossypium hirsutum HOM05D004003 ORTHO05D004595 5.0e-67 258.1 175 73.7
Gohir.D12G255550 Gossypium hirsutum HOM05D004003 ORTHO05D004595 5.0e-67 258.1 175 73.7
Manes.14G021000 Manihot esculenta HOM05D004003 ORTHO05D004595 5.0e-67 258.1 175 75.4
CsaV3_3G017590 Cucumis sativus L. HOM05D004003 ORTHO05D004595 8.6e-67 257.3 173 75.1
Manes.06G153700 Manihot esculenta HOM05D004003 ORTHO05D004595 1.1e-66 256.9 175 76.0
Sed0009881 Sechium edule HOM05D004003 ORTHO05D004595 1.1e-66 256.9 161 78.3
Thhalv10014849m.g Eutrema salsugineum HOM05D004003 ORTHO05D004595 1.5e-66 256.5 175 74.9
AL8G27280 Arabidopsis lyrata HOM05D004003 ORTHO05D004595 2.5e-66 255.8 175 74.9
MELO3C006949.2 Cucumis melo HOM05D004003 ORTHO05D004595 3.2e-66 255.4 152 82.2
Glyma.09G129000 Glycine max HOM05D004003 ORTHO05D004595 3.2e-66 255.4 175 74.3
ClCG05G008500 Citrullus lanatus HOM05D004003 ORTHO05D004595 5.5e-66 254.6 152 82.2
THA.LOC104825117 Tarenaya hassleriana HOM05D004003 ORTHO05D004595 5.5e-66 254.6 175 75.4
arahy.Tifrunner.gnm1.ann1.R03NAB Arachis hypogaea HOM05D004003 ORTHO05D004595 7.2e-66 254.2 175 74.9
PSO017G3679 Papaver somniferum HOM05D004003 ORTHO05D004595 9.5e-66 253.8 175 74.3
FAN10G2159 Fragaria x ananassa HOM05D004003 ORTHO05D004595 1.2e-65 253.4 175 73.7
VMungo0464G2050 Vigna mungo HOM05D004003 ORTHO05D004595 1.2e-65 253.4 175 74.3
Gohir.A12G253200 Gossypium hirsutum HOM05D004003 ORTHO05D004595 1.6e-65 253.1 175 72.6
Sp6g15000 Schrenkiella parvula HOM05D004003 ORTHO05D004595 1.6e-65 253.1 175 74.3
BraA03t10847Z Brassica rapa HOM05D004003 ORTHO05D004595 2.1e-65 252.7 170 74.1
FvH4_7g30480 Fragaria vesca HOM05D004003 ORTHO05D004595 2.1e-65 252.7 175 73.7
FAN01G1512 Fragaria x ananassa HOM05D004003 ORTHO05D004595 2.1e-65 252.7 175 73.7
FAN06G3020 Fragaria x ananassa HOM05D004003 ORTHO05D004595 2.1e-65 252.7 175 73.7
vmacro06614 Vaccinium macrocarpon HOM05D004003 ORTHO05D004595 2.1e-65 252.7 230 60.9
BcaB01g04212 Brassica carinata HOM05D004003 ORTHO05D004595 2.8e-65 252.3 175 73.7
FAN03G0349 Fragaria x ananassa HOM05D004003 ORTHO05D004595 2.8e-65 252.3 175 73.1
FAN03G2611 Fragaria x ananassa HOM05D004003 ORTHO05D004595 2.8e-65 252.3 175 73.1
Phvul.004G105700 Phaseolus vulgaris HOM05D004003 ORTHO05D004595 2.8e-65 252.3 174 74.1
Thhalv10026409m.g Eutrema salsugineum HOM05D004003 ORTHO05D004595 3.6e-65 251.9 175 73.1
Prupe.2G302600 Prunus persica HOM05D004003 ORTHO05D004595 3.6e-65 251.9 175 73.7
TWI23G0858 Tripterygium wilfordii HOM05D004003 ORTHO05D004595 3.6e-65 251.9 162 78.4
AT5G52840 Arabidopsis thaliana HOM05D004003 ORTHO05D004595 4.7e-65 251.5 175 73.7
BraA10t43109Z Brassica rapa HOM05D004003 ORTHO05D004595 6.1e-65 251.1 171 74.9
Nn6g32413 Nelumbo nucifera HOM05D004003 ORTHO05D004595 6.1e-65 251.1 153 79.1
TAR629G0127 Trochodendron aralioides HOM05D004003 ORTHO05D004595 6.1e-65 251.1 175 73.7
A02p11580 Brassica napus HOM05D004003 ORTHO05D004595 8.0e-65 250.8 173 74.0
BraA02t06220Z Brassica rapa HOM05D004003 ORTHO05D004595 8.0e-65 250.8 173 74.0
FAN06G1184 Fragaria x ananassa HOM05D004003 ORTHO05D004595 8.0e-65 250.8 175 73.1
FAN10G2319 Fragaria x ananassa HOM05D004003 ORTHO05D004595 8.0e-65 250.8 175 73.1
A03p15550 Brassica napus HOM05D004003 ORTHO05D004595 1.0e-64 250.4 170 73.5
Dinv28379 Davidia involucrata HOM05D004003 ORTHO05D004595 1.0e-64 250.4 148 84.5
MD07G1280400 Malus domestica HOM05D004003 ORTHO05D004595 1.0e-64 250.4 175 71.4
RcHm_v2.0_Chr1g0378851 Rosa chinensis HOM05D004003 ORTHO05D004595 1.0e-64 250.4 175 73.1
PSO478G4828 Papaver somniferum HOM05D004003 ORTHO05D004595 1.4e-64 250.0 178 74.2
TWI14G1326 Tripterygium wilfordii HOM05D004003 ORTHO05D004595 1.4e-64 250.0 154 81.8
CARHR265770 Cardamine hirsuta HOM05D004003 ORTHO05D004595 1.8e-64 249.6 176 73.9
Aa31LG3G9080 Aethionema arabicum HOM05D004003 ORTHO05D004595 2.3e-64 249.2 175 72.6
BcaC04g20535 Brassica carinata HOM05D004003 ORTHO05D004595 2.3e-64 249.2 171 74.9
C09p42440 Brassica napus HOM05D004003 ORTHO05D004595 2.3e-64 249.2 171 74.9
MD01G1210300 Malus domestica HOM05D004003 ORTHO05D004595 2.3e-64 249.2 175 70.9
Carub.0008s1300 Capsella rubella HOM05D004003 ORTHO05D004595 3.0e-64 248.8 175 72.0
Potri.004G071900 Populus trichocarpa HOM05D004003 ORTHO05D004595 4.0e-64 248.4 175 71.4
Sp7g25950 Schrenkiella parvula HOM05D004003 ORTHO05D004595 4.0e-64 248.4 175 72.0
PGR042G1718 Punica granatum HOM05D004003 ORTHO05D004595 5.2e-64 248.1 175 72.6
A10p10290 Brassica napus HOM05D004003 ORTHO05D004595 6.8e-64 247.7 171 74.3
BolC3t14217H Brassica oleracea HOM05D004003 ORTHO05D004595 6.8e-64 247.7 175 72.6
Sabra04G0047300 Salix brachista HOM05D004003 ORTHO05D004595 6.8e-64 247.7 175 72.0
BcaB08g35638 Brassica carinata HOM05D004003 ORTHO05D004595 8.8e-64 247.3 175 72.6
BcaC01g06202 Brassica carinata HOM05D004003 ORTHO05D004595 8.8e-64 247.3 175 72.6
C03p18160 Brassica napus HOM05D004003 ORTHO05D004595 8.8e-64 247.3 175 72.6
Potri.017G149100 Populus trichocarpa HOM05D004003 ORTHO05D004595 4.4e-63 245.0 175 70.3
Sabra17G0124400 Salix brachista HOM05D004003 ORTHO05D004595 1.3e-62 243.4 174 70.1
BcaB05g21985 Brassica carinata HOM05D004003 ORTHO05D004595 2.2e-62 242.7 153 77.1
Psat5g299680 Pisum sativum HOM05D004003 ORTHO05D004595 8.3e-62 240.7 183 69.4
Psat0s1604g0040 Pisum sativum HOM05D004003 ORTHO05D004595 1.4e-61 240.0 183 68.9
CANSAT21G1389 Cannabis sativa HOM05D004003 ORTHO05D004595 5.4e-61 238.0 151 75.5
CANSAT21G1446 Cannabis sativa HOM05D004003 ORTHO05D004595 5.4e-61 238.0 151 75.5
Ca_20595_v3 Cicer arietinum L. HOM05D004003 ORTHO05D004595 1.2e-60 236.9 183 68.9
HPP92_001384 Vanilla planifolia HOM05D004003 ORTHO05D004595 1.2e-60 236.9 169 70.4
C02p19300 Brassica napus HOM05D004003 ORTHO05D004595 2.0e-60 236.1 175 70.9
BolC2t08066H Brassica oleracea HOM05D004003 ORTHO05D004595 2.0e-60 236.1 175 70.9
Medtr6g053280 Medicago truncatula HOM05D004003 ORTHO05D004595 5.9e-60 234.6 183 66.1
TPR.G27150 Trifolium pratense HOM05D004003 ORTHO05D004595 1.0e-59 233.8 183 67.8
CDE05G0545 Ceratophyllum demersum HOM05D004003 ORTHO05D004595 6.1e-57 224.6 154 72.7
CDE05G3305 Ceratophyllum demersum HOM05D004003 ORTHO05D004595 8.0e-57 224.2 154 72.1
Zm00001eb015010 Zea mays HOM05D004003 ORTHO05D004595 5.2e-56 221.5 159 69.2
Os03g0313000 Oryza sativa ssp. japonica HOM05D004003 ORTHO05D004595 1.5e-55 219.9 159 69.2
AUR62042233 Chenopodium quinoa HOM05D004003 ORTHO05D004595 2.6e-55 219.2 170 67.6
ATR0721G154 Amborella trichopoda HOM05D004003 ORTHO05D004595 6.4e-54 214.5 149 69.8
PSO478G1314 Papaver somniferum HOM05D004003 ORTHO05D004595 6.4e-54 214.5 150 72.7
Haze_00063 Corylus avellana HOM05D004003 ORTHO05D004595 2.0e-52 209.5 132 76.5
TAR636G0624 Trochodendron aralioides HOM05D004003 ORTHO05D004595 4.7e-49 198.4 132 74.2
SEGI_14933 Sequoiadendron giganteum HOM05D004003 ORTHO05D004595 1.8e-48 196.4 173 57.2
BolC9t57124H Brassica oleracea HOM05D004003 ORTHO05D004595 1.5e-47 193.4 171 61.4
MD00G1172600 Malus domestica HOM05D004003 ORTHO05D004595 8.3e-46 187.6 132 69.7
MD13G1261600 Malus domestica HOM05D004003 ORTHO05D004595 1.2e-41 173.7 111 72.1
vmacro09809 Vaccinium macrocarpon HOM05D004003 ORTHO05D004595 2.8e-41 172.6 154 57.8
HanXRQChr10g0304961 Helianthus annuus HOM05D004003 ORTHO05D004595 1.4e-40 170.2 107 85.0
Ah.10g032500 Amaranthus hybridus HOM05D004003 ORTHO05D004595 1.8e-40 169.9 179 57.0
AagrBONN_evm.TU.Sc2ySwM_344.4010 Anthoceros agrestis HOM05D004003 ORTHO05D004595 3.1e-40 169.1 136 62.5
Pp3c5_12290 Physcomitrium patens HOM05D004003 ORTHO05D004595 5.2e-40 168.3 136 61.8
Mapoly0111s0029 Marchantia polymorpha HOM05D004003 ORTHO05D004595 2.2e-38 162.9 136 60.3
CBR_g31069 Chara braunii HOM05D004003 ORTHO05D004595 4.9e-38 161.8 135 58.5
Zm00001eb395850 Zea mays HOM05D004003 ORTHO05D004595 4.4e-31 138.7 125 62.4
Thhalv10015894m.g Eutrema salsugineum HOM05D004003 ORTHO05D004595 1.3e-30 137.1 175 51.4
CAN.G311.32 Capsicum annuum HOM05D005247 ORTHO05D006571 2.9e-30 136.0 106 69.8
BcaC03g14495 Brassica carinata HOM05D004003 ORTHO05D004595 1.6e-28 130.2 90 77.8
SMO119G0129 Selaginella moellendorffii HOM05D004003 ORTHO05D004595 1.3e-27 127.1 120 50.0
RcHm_v2.0_Chr1g0362161 Rosa chinensis HOM05D004003 ORTHO05D004595 2.3e-27 126.3 88 78.4
CAN.G204.11 Capsicum annuum HOM05D004003 ORTHO05D004595 1.5e-26 123.6 57 94.7
Ah.03g141030 Amaranthus hybridus HOM05D004003 ORTHO05D004595 1.2e-25 120.6 91 64.8
ECA240G4047 Erigeron canadensis HOM05D004003 ORTHO05D004595 8.1e-25 117.9 143 37.8
ECA238G0868 Erigeron canadensis HOM05D004003 ORTHO05D004595 1.4e-24 117.1 164 40.9
ECA240G1980 Erigeron canadensis HOM05D004003 ORTHO05D004595 5.2e-24 115.2 130 44.6
ECA240G4361 Erigeron canadensis HOM05D004003 ORTHO05D004595 5.2e-24 115.2 130 44.6
Psat6g098040 Pisum sativum HOM05D000395 ORTHO05D004595 1.2e-23 114.0 94 62.8
CAN.G640.19 Capsicum annuum HOM05D004003 ORTHO05D004595 2.7e-20 102.8 71 76.1
COL.COLO4_06858 Corchorus olitorius HOM05D004003 ORTHO05D004595 8.7e-19 97.8 68 64.7
Dinv24022 Davidia involucrata HOM05D004003 ORTHO05D004595 2.5e-18 96.3 72 68.1
BcaC03g14494 Brassica carinata HOM05D004003 ORTHO05D004595 4.3e-18 95.5 71 63.4
AT4G28005 Arabidopsis thaliana HOM05D004003 ORTHO05D004595 7.3e-18 94.7 175 41.1
MCO01G593 Micromonas commoda HOM05D004003 ORTHO05D004595 1.6e-17 93.6 100 45.0
MCO01G594 Micromonas commoda HOM05D004003 ORTHO05D004595 1.6e-17 93.6 100 45.0
ATR0721G175 Amborella trichopoda HOM05D004003 ORTHO05D004595 1.2e-12 77.4 59 50.8
Rhsim03G0124900 Rhododendron simsii HOM05D004003 ORTHO05D004595 1.2e-12 77.4 52 75.0
Haze_26197 Corylus avellana HOM05D004003 ORTHO05D004595 6.0e-12 75.1 101 38.6
Cre13.g568800 Chlamydomonas reinhardtii HOM05D004003 ORTHO05D004595 4.8e-09 65.5 95 38.9
PRCOL_00006691 Prasinoderma coloniale HOM05D004003 ORTHO05D004595 3.8e-06 55.8 97 39.2


User provided reference genes

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