Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc06g036250.2 Solanum lycopersicum HOM05D002831 ORTHO05D004341 1.0e-97 360.1 191 100.0
Sopen06g012030 Solanum pennellii HOM05D002831 ORTHO05D004341 5.8e-93 344.4 186 98.4
PGSC0003DMG400028898 Solanum tuberosum HOM05D002831 ORTHO05D004341 6.4e-92 340.9 186 96.8
Peaxi162Scf00618g00748 Petunia axillaris HOM05D001680 ORTHO05D004341 8.9e-78 293.9 185 82.7
Nitab4.5_0003825g0080 Nicotiana tabacum HOM05D002831 ORTHO05D004341 1.5e-72 276.6 185 82.7
Nitab4.5_0000248g0010 Nicotiana tabacum HOM05D002831 ORTHO05D004341 4.9e-68 261.5 180 80.0
Peaxi162Scf00444g00016 Petunia axillaris HOM05D002831 ORTHO05D004341 5.1e-65 251.5 185 75.1
Nitab4.5_0000572g0140 Nicotiana tabacum HOM05D002831 ORTHO05D004341 2.1e-63 246.1 185 74.1
CAN.G204.16 Capsicum annuum HOM05D002831 ORTHO05D004341 2.4e-62 242.7 175 80.0
Nitab4.5_0000084g0400 Nicotiana tabacum HOM05D002831 ORTHO05D004341 3.1e-62 242.3 185 73.0
CAN.G126.12 Capsicum annuum HOM05D002831 ORTHO05D004341 4.2e-59 231.9 186 70.4
Dinv28390 Davidia involucrata HOM05D002831 ORTHO05D004341 1.3e-55 220.3 185 64.9
Sopen03g003930 Solanum pennellii HOM05D002831 ORTHO05D004341 4.0e-54 215.3 185 68.6
Actinidia34155 Actinidia chinensis HOM05D002831 ORTHO05D004341 1.2e-53 213.8 185 67.0
Cc02_g02420 Coffea canephora HOM05D002831 ORTHO05D004341 1.2e-53 213.8 185 64.9
Dinv35249 Davidia involucrata HOM05D002831 ORTHO05D004341 2.0e-53 213.0 184 65.8
PGSC0003DMG400010167 Solanum tuberosum HOM05D002831 ORTHO05D004341 2.0e-53 213.0 174 70.1
Lj1P1004T73 Lonicera japonica HOM05D002831 ORTHO05D004341 1.7e-52 209.9 186 61.3
CSS0004722 Camellia sinensis var. sinensis HOM05D002831 ORTHO05D004341 2.2e-52 209.5 185 62.2
CSS0021117 Camellia sinensis var. sinensis HOM05D002831 ORTHO05D004341 2.2e-52 209.5 185 62.2
CSS0012099 Camellia sinensis var. sinensis HOM05D002831 ORTHO05D004341 6.5e-52 208.0 184 63.0
CSS0034926 Camellia sinensis var. sinensis HOM05D002831 ORTHO05D004341 6.5e-52 208.0 184 63.0
Actinidia08576 Actinidia chinensis HOM05D002831 ORTHO05D004341 7.9e-50 201.1 185 64.3
Potri.004G079900 Populus trichocarpa HOM05D002831 ORTHO05D004341 2.1e-47 193.0 185 61.6
Potri.017G143215 Populus trichocarpa HOM05D002831 ORTHO05D004341 4.8e-47 191.8 185 63.2
vmacro06629 Vaccinium macrocarpon HOM05D002831 ORTHO05D004341 8.2e-47 191.0 180 61.7
Rhsim03G0190700 Rhododendron simsii HOM05D002831 ORTHO05D004341 1.1e-46 190.7 180 62.2
Cpa.g.sc107.104 Carica papaya HOM05D002831 ORTHO05D004341 9.0e-46 187.6 185 60.5
Duzib084G1013 Durio zibethinus HOM05D002831 ORTHO05D004341 9.0e-46 187.6 185 61.1
Oeu036905.1 Olea europaea HOM05D002831 ORTHO05D004341 9.0e-46 187.6 187 58.8
TWI23G0387 Tripterygium wilfordii HOM05D002831 ORTHO05D004341 2.0e-45 186.4 185 55.1
DCAR_020268 Daucus carota HOM05D002831 ORTHO05D004341 2.6e-45 186.0 185 52.4
Oeu045362.1 Olea europaea HOM05D002831 ORTHO05D004341 5.9e-45 184.9 185 60.0
Sabra17G0120100 Salix brachista HOM05D002831 ORTHO05D004341 7.6e-45 184.5 185 61.1
COL.COLO4_10060 Corchorus olitorius HOM05D002831 ORTHO05D004341 1.3e-44 183.7 187 62.0
DCAR_009393 Daucus carota HOM05D002831 ORTHO05D004341 1.3e-44 183.7 185 57.3
Sabra04G0053100 Salix brachista HOM05D002831 ORTHO05D004341 1.3e-44 183.7 185 58.9
Hma1.2p1_0274F.1_g110180 Hydrangea macrophylla HOM05D002831 ORTHO05D004341 2.2e-44 183.0 185 59.5
Thecc.03G183700 Theobroma cacao HOM05D002831 ORTHO05D004341 5.0e-44 181.8 185 61.1
Duzib068G1050 Durio zibethinus HOM05D002831 ORTHO05D004341 1.9e-43 179.9 185 60.5
Oeu060465.1 Olea europaea HOM05D002831 ORTHO05D004341 2.5e-43 179.5 178 53.4
Rhsim09G0200400 Rhododendron simsii HOM05D002831 ORTHO05D004341 2.5e-43 179.5 185 58.4
TAR374G0609 Trochodendron aralioides HOM05D002831 ORTHO05D004341 7.2e-43 177.9 184 59.8
Atru.chr1.379 Acer truncatum HOM05D002831 ORTHO05D004341 1.8e-41 173.3 186 60.2
Atru.ctg97_1.16 Acer truncatum HOM05D002831 ORTHO05D004341 1.8e-41 173.3 186 60.2
SalBow4G1512 Salvia bowleyana HOM05D002831 ORTHO05D004341 1.8e-41 173.3 186 61.3
Ciclev10005857m.g Citrus clementina HOM05D002831 ORTHO05D004341 6.7e-41 171.4 185 57.3
Actinidia31838 Actinidia chinensis HOM05D002831 ORTHO05D004341 2.5e-40 169.5 186 59.1
Duzib205G1365 Durio zibethinus HOM05D002831 ORTHO05D004341 3.3e-40 169.1 184 58.7
TWI39G0102 Tripterygium wilfordii HOM05D002831 ORTHO05D004341 9.7e-40 167.5 185 53.5
TWI14G0525 Tripterygium wilfordii HOM05D002831 ORTHO05D004341 3.7e-39 165.6 185 55.1
Gorai.006G199200 Gossypium raimondii HOM05D002831 ORTHO05D004341 4.8e-39 165.2 186 57.0
Gohir.A12G255500 Gossypium hirsutum HOM05D002831 ORTHO05D004341 1.8e-38 163.3 186 57.0
Gohir.D09G177200 Gossypium hirsutum HOM05D002831 ORTHO05D004341 6.9e-38 161.4 186 57.0
Gohir.D12G256900 Gossypium hirsutum HOM05D002831 ORTHO05D004341 1.5e-37 160.2 186 55.4
Gorai.008G275100 Gossypium raimondii HOM05D002831 ORTHO05D004341 1.5e-37 160.2 186 55.4
AUR62021127 Chenopodium quinoa HOM05D002831 ORTHO05D004341 2.6e-37 159.5 182 51.6
MSTRG.27090 Avicennia marina HOM05D002831 ORTHO05D004341 1.3e-36 157.1 185 57.8
AUR62031417 Chenopodium quinoa HOM05D002831 ORTHO05D004341 1.3e-36 157.1 182 51.1
EL10Ac3g05428 Beta vulgaris HOM05D002831 ORTHO05D004341 6.5e-36 154.8 181 55.8
THA.LOC104800271 Tarenaya hassleriana HOM05D002831 ORTHO05D004341 8.5e-36 154.5 187 47.1
Gohir.A09G182600 Gossypium hirsutum HOM05D002831 ORTHO05D004341 2.5e-35 152.9 188 55.3
Manes.14G023000 Manihot esculenta HOM05D002831 ORTHO05D004341 3.2e-35 152.5 184 51.1
CiPaw.06G003300 Carya illinoinensis HOM05D002831 ORTHO05D004341 5.5e-35 151.8 147 51.7
Aqoxy7G00243 Aquilegia oxysepala HOM05D002831 ORTHO05D004341 1.2e-34 150.6 185 54.1
Manes.06G152100 Manihot esculenta HOM05D002831 ORTHO05D004341 6.1e-34 148.3 184 50.5
MSTRG.74 Avicennia marina HOM05D002831 ORTHO05D004341 7.9e-34 147.9 185 53.5
CiPaw.06G003100 Carya illinoinensis HOM05D002831 ORTHO05D004341 1.4e-33 147.1 147 51.0
CANSAT11G0421 Cannabis sativa HOM05D002831 ORTHO05D004341 1.8e-33 146.7 148 50.0
Eucgr.A02748 Eucalyptus grandis HOM05D002831 ORTHO05D004341 1.8e-33 146.7 186 48.9
Hma1.2p1_0327F.1_g126410 Hydrangea macrophylla HOM05D002831 ORTHO05D004341 1.8e-33 146.7 145 50.3
Prupe.2G300400 Prunus persica HOM05D002831 ORTHO05D004341 3.0e-33 146.0 184 50.0
TAR375G0840 Trochodendron aralioides HOM05D002831 ORTHO05D004341 5.1e-33 145.2 147 53.1
CiPaw.12G018300 Carya illinoinensis HOM05D002831 ORTHO05D004341 1.1e-32 144.1 185 51.9
Migut.F00296 Erythranthe guttata HOM05D002831 ORTHO05D004341 1.1e-32 144.1 187 53.5
Cfa016283 Carpinus fangiana HOM05D002831 ORTHO05D004341 1.5e-32 143.7 148 50.0
Haze_00039 Corylus avellana HOM05D002831 ORTHO05D004341 1.5e-32 143.7 145 50.3
Glyma.16G179300 Glycine max HOM05D002831 ORTHO05D004341 1.3e-31 140.6 180 51.7
unitig_37.g11969 Utricularia gibba HOM05D002831 ORTHO05D004341 1.3e-31 140.6 185 53.0
Ah.07g206590 Amaranthus hybridus HOM05D002831 ORTHO05D004341 1.7e-31 140.2 179 47.5
Glyma.09G132500 Glycine max HOM05D002831 ORTHO05D004341 2.2e-31 139.8 181 53.0
MD01G1207900 Malus domestica HOM05D002831 ORTHO05D004341 2.2e-31 139.8 148 50.7
arahy.Tifrunner.gnm1.ann1.VWVY78 Arachis hypogaea HOM05D002831 ORTHO05D010484 3.7e-31 139.0 172 54.7
Phvul.004G109000 Phaseolus vulgaris HOM05D002831 ORTHO05D004341 3.7e-31 139.0 180 51.1
VMungo0464G0591 Vigna mungo HOM05D002831 ORTHO05D004341 4.8e-31 138.7 180 51.7
RcHm_v2.0_Chr1g0378241 Rosa chinensis HOM05D002831 ORTHO05D004341 6.3e-31 138.3 148 48.6
MD07G1278500 Malus domestica HOM05D002831 ORTHO05D004341 8.2e-31 137.9 148 50.7
PGR042G3073 Punica granatum HOM05D002831 ORTHO05D004341 1.1e-30 137.5 185 52.4
AL8G27020 Arabidopsis lyrata HOM05D002831 ORTHO05D004341 2.4e-30 136.3 186 45.7
Lalb_Chr02g0141231 Lupinus albus HOM05D002831 ORTHO05D004341 2.4e-30 136.3 176 54.5
PSO478G4817 Papaver somniferum HOM05D002831 ORTHO05D004341 5.3e-30 135.2 181 48.1
FAN03G0781 Fragaria x ananassa HOM05D002831 ORTHO05D004341 1.2e-29 134.0 148 48.0
QL09p012962 Quercus lobata HOM05D002831 ORTHO05D004341 1.2e-29 134.0 146 47.9
AL7G27390 Arabidopsis lyrata HOM05D002831 ORTHO05D004341 2.0e-29 133.3 185 48.1
GSVIVG01028866001 Vitis vinifera HOM05D002831 ORTHO05D010484 3.4e-29 132.5 147 55.8
FvH4_7g30190 Fragaria vesca HOM05D002831 ORTHO05D004341 4.5e-29 132.1 148 48.0
FAN01G0089 Fragaria x ananassa HOM05D002831 ORTHO05D004341 4.5e-29 132.1 148 47.3
FAN06G3328 Fragaria x ananassa HOM05D002831 ORTHO05D004341 4.5e-29 132.1 148 48.0
Lalb_Chr03g0034811 Lupinus albus HOM05D002831 ORTHO05D004341 1.0e-28 131.0 180 51.7
AT4G25690 Arabidopsis thaliana HOM05D002831 ORTHO05D004341 2.2e-28 129.8 183 48.1
FAN03G0359 Fragaria x ananassa HOM05D002831 ORTHO05D004341 2.2e-28 129.8 148 47.3
PSO782G2858 Papaver somniferum HOM05D002831 ORTHO05D004341 2.2e-28 129.8 175 49.7
FAN10G3196 Fragaria x ananassa HOM05D002831 ORTHO05D004341 2.9e-28 129.4 148 47.3
Aa31LG3G8920 Aethionema arabicum HOM05D002831 ORTHO05D004341 3.8e-28 129.0 172 43.6
Sp7g23710 Schrenkiella parvula HOM05D002831 ORTHO05D004341 3.8e-28 129.0 186 45.7
Carub.0008s1268 Capsella rubella HOM05D002831 ORTHO05D004341 1.1e-27 127.5 185 44.3
Gorai.007G012600 Gossypium raimondii HOM05D002831 ORTHO05D004341 1.4e-27 127.1 186 51.6
CARHR233110 Cardamine hirsuta HOM05D002831 ORTHO05D004341 1.9e-27 126.7 187 46.0
Carub.0007s1530 Capsella rubella HOM05D002831 ORTHO05D004341 2.5e-27 126.3 186 45.2
Gohir.A11G011900 Gossypium hirsutum HOM05D002831 ORTHO05D004341 2.5e-27 126.3 186 51.6
AL7G27410 Arabidopsis lyrata HOM05D002831 ORTHO05D004341 4.2e-27 125.6 186 45.7
AT5G52550 Arabidopsis thaliana HOM05D002831 ORTHO05D004341 4.2e-27 125.6 186 44.1
Gohir.D11G011100 Gossypium hirsutum HOM05D002831 ORTHO05D004341 5.5e-27 125.2 186 51.1
ATR0661G020 Amborella trichopoda HOM05D002831 ORTHO05D004341 1.2e-26 124.0 121 58.7
CsaV3_3G017430 Cucumis sativus L. HOM05D002831 ORTHO05D004341 1.2e-26 124.0 147 47.6
Ah.13g069150 Amaranthus hybridus HOM05D002831 ORTHO05D004341 2.1e-26 123.2 182 45.1
BNapus_Darmor_BZH_scaffold_232p00070 Brassica napus HOM05D002831 ORTHO05D004341 2.1e-26 123.2 185 42.7
Thhalv10027473m.g Eutrema salsugineum HOM05D002831 ORTHO05D004341 2.7e-26 122.9 186 45.2
TPR.G7753 Trifolium pratense HOM05D002831 ORTHO05D004341 4.7e-26 122.1 181 49.2
AT4G25670 Arabidopsis thaliana HOM05D002831 ORTHO05D004341 6.1e-26 121.7 185 44.3
BraA02t06237Z Brassica rapa HOM05D002831 ORTHO05D004341 6.1e-26 121.7 185 43.2
Gohir.A08G098200 Gossypium hirsutum HOM05D002831 ORTHO05D004341 1.4e-25 120.6 177 53.1
Gorai.004G117400 Gossypium raimondii HOM05D002831 ORTHO05D004341 1.4e-25 120.6 177 53.1
MELO3C006940.2 Cucumis melo HOM05D002831 ORTHO05D004341 1.8e-25 120.2 147 47.6
TPR.G21560 Trifolium pratense HOM05D002831 ORTHO05D004341 1.8e-25 120.2 181 49.2
BraA01t01645Z Brassica rapa HOM05D002831 ORTHO05D004341 2.3e-25 119.8 185 44.3
Thhalv10026278m.g Eutrema salsugineum HOM05D002831 ORTHO05D004341 2.3e-25 119.8 184 46.7
Lj5g0008853 Lotus japonicus HOM05D002831 ORTHO05D004341 2.3e-25 119.8 182 48.4
THA.LOC104811959 Tarenaya hassleriana HOM05D002831 ORTHO05D004341 2.3e-25 119.8 186 40.9
A01p16930 Brassica napus HOM05D002831 ORTHO05D004341 3.0e-25 119.4 186 43.5
Ca_10728_v3 Cicer arietinum L. HOM05D002831 ORTHO05D004341 6.7e-25 118.2 180 47.8
Gohir.D08G109800 Gossypium hirsutum HOM05D002831 ORTHO05D004341 6.7e-25 118.2 177 52.0
Sp7g23730 Schrenkiella parvula HOM05D002831 ORTHO05D004341 6.7e-25 118.2 185 45.9
BolC1t02049H Brassica oleracea HOM05D002831 ORTHO05D004341 1.1e-24 117.5 189 51.3
ClCG05G008340 Citrullus lanatus HOM05D002831 ORTHO05D004341 1.1e-24 117.5 147 46.9
C01p21210 Brassica napus HOM05D002831 ORTHO05D004341 2.0e-24 116.7 185 43.8
BolC1t02046H Brassica oleracea HOM05D002831 ORTHO05D004341 2.0e-24 116.7 185 43.8
BraA01t01648Z Brassica rapa HOM05D002831 ORTHO05D004341 2.0e-24 116.7 185 44.3
Glyma.10G231300 Glycine max HOM05D002831 ORTHO05D004341 2.6e-24 116.3 180 47.8
Psat6g196360 Pisum sativum HOM05D002831 ORTHO05D004341 3.3e-24 115.9 182 50.0
Sed0011382 Sechium edule HOM05D002831 ORTHO05D004341 7.4e-24 114.8 147 45.6
Sabra06G0007800 Salix brachista HOM05D002831 ORTHO05D010484 9.7e-24 114.4 128 46.1
SGA_v2.0_scaffold113G31691 Striga asiatica HOM05D002831 ORTHO05D008967 9.7e-24 114.4 185 49.7
SGA_v2.0_scaffold60G21104 Striga asiatica HOM05D002831 ORTHO05D004341 9.7e-24 114.4 189 50.3
A02p11720 Brassica napus HOM05D002831 ORTHO05D004341 1.3e-23 114.0 186 41.4
Glyma.20G162500 Glycine max HOM05D002831 ORTHO05D004341 1.3e-23 114.0 180 46.7
unitig_0.g2470 Utricularia gibba HOM05D002831 ORTHO05D004341 1.7e-23 113.6 186 44.1
Migut.F01087 Erythranthe guttata HOM05D002831 ORTHO05D004341 3.7e-23 112.5 175 49.1
Sc19g0001290 Simmondsia chinensis HOM05D002831 ORTHO05D004341 4.8e-23 112.1 181 47.0
Sed0001656 Sechium edule HOM05D002831 ORTHO05D004341 1.4e-22 110.5 146 45.9
MSTRG.8713 Avicennia marina HOM05D002831 ORTHO05D004341 1.8e-22 110.2 149 41.6
MBI11_g04751_MAGBIO Magnolia biondii HOM05D002831 ORTHO05D004341 1.8e-22 110.2 183 49.2
BcaNung07307 Brassica carinata HOM05D002831 ORTHO05D004341 9.1e-22 107.8 185 41.1
CARHR233150 Cardamine hirsuta HOM05D002831 ORTHO05D004341 3.5e-21 105.9 184 42.4
BcaB05g21966 Brassica carinata HOM05D002831 ORTHO05D004341 7.7e-21 104.8 184 46.2
HPP92_022210 Vanilla planifolia HOM05D002831 ORTHO05D004341 1.0e-20 104.4 181 42.0
HPP92_022228 Vanilla planifolia HOM05D002831 ORTHO05D004341 1.0e-20 104.4 181 42.0
SGA_v2.0_scaffold10G05296 Striga asiatica HOM05D002831 ORTHO05D004341 1.3e-20 104.0 187 40.1
BcaC06g32789 Brassica carinata HOM05D002831 ORTHO05D004341 5.0e-20 102.1 187 42.8
Lalb_Chr06g0161301 Lupinus albus HOM05D002831 ORTHO05D004341 5.0e-20 102.1 180 44.4
vmacro09817 Vaccinium macrocarpon HOM05D002831 ORTHO05D004341 1.1e-19 100.9 95 71.6
BcaC03g14518 Brassica carinata HOM05D002831 ORTHO05D004341 1.9e-19 100.1 109 49.5
FAN10G0429 Fragaria x ananassa HOM05D002831 ORTHO05D004341 1.9e-19 100.1 127 41.7
HPP92_022231 Vanilla planifolia HOM05D002831 ORTHO05D004341 5.2e-17 92.0 125 48.0
Lalb_Chr21g0305221 Lupinus albus HOM05D002831 ORTHO05D004341 4.4e-16 89.0 111 60.4
VMungo0720G1018 Vigna mungo HOM05D002831 ORTHO05D004341 2.2e-15 86.7 173 41.6
HPP92_008924 Vanilla planifolia HOM05D002831 ORTHO05D004341 2.8e-15 86.3 172 42.4
HanXRQChr14g0462531 Helianthus annuus HOM05D002831 ORTHO05D004341 3.7e-15 85.9 166 38.6
ECA232G1618 Erigeron canadensis HOM05D002831 ORTHO05D004341 3.1e-14 82.8 199 42.7
BraA03t14689Z Brassica rapa HOM05D000048 ORTHO05D000445 5.3e-14 82.0 85 67.1
C07p54490 Brassica napus HOM05D000048 ORTHO05D000445 7.0e-14 81.6 74 66.2
BolC7t45934H Brassica oleracea HOM05D000048 ORTHO05D000445 7.0e-14 81.6 74 66.2
SEGI_15574 Sequoiadendron giganteum HOM05D002831 ORTHO05D004341 7.0e-14 81.6 222 36.9
Nn1g08525 Nelumbo nucifera HOM05D002831 ORTHO05D004341 5.9e-13 78.6 142 38.0
CARHR265540 Cardamine hirsuta HOM05D002831 ORTHO05D004341 1.0e-12 77.8 78 57.7
Os02g0104200 Oryza sativa ssp. japonica HOM05D002831 ORTHO05D004341 5.0e-12 75.5 179 40.2
ECA238G2131 Erigeron canadensis HOM05D002831 ORTHO05D004341 1.5e-11 73.9 150 38.0
Medtr1g100090 Medicago truncatula HOM05D002831 ORTHO05D004341 1.2e-10 70.9 105 57.1
Zm00001eb229390 Zea mays HOM05D002831 ORTHO05D004341 8.8e-09 64.7 140 34.3
Carub.0007s1527 Capsella rubella HOM05D002831 ORTHO05D004341 1.7e-07 60.5 50 72.0
Lsat_1_v5_gn_2_131301 Lactuca sativa HOM05D002831 ORTHO05D004341 2.2e-07 60.1 151 39.1


User provided reference genes

Program Settings