Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc06g036000.4 Solanum lycopersicum HOM05D004671 ORTHO05D005638 3.4e-217 758.1 391 100.0
Sopen06g011780 Solanum pennellii HOM05D004671 ORTHO05D005638 1.3e-179 633.3 330 99.4
CAN.G208.79 Capsicum annuum HOM05D004671 ORTHO05D005638 3.1e-178 628.6 386 84.7
Peaxi162Scf00848g00012 Petunia axillaris HOM05D004671 ORTHO05D005638 3.1e-178 628.6 390 83.6
Nitab4.5_0001951g0070 Nicotiana tabacum HOM05D004671 ORTHO05D005638 4.2e-175 618.2 390 84.1
Dinv24388 Davidia involucrata HOM05D004671 ORTHO05D005638 3.8e-131 472.2 388 64.7
Cc02_g02840 Coffea canephora HOM05D004671 ORTHO05D005638 1.2e-129 467.2 386 64.8
MSTRG.27109 Avicennia marina HOM05D004671 ORTHO05D005638 1.7e-128 463.4 390 63.1
Nitab4.5_0000080g0100 Nicotiana tabacum HOM05D004671 ORTHO05D005638 2.6e-124 449.5 398 67.1
GSVIVG01028933001 Vitis vinifera HOM05D004671 ORTHO05D005638 2.1e-118 429.9 382 59.7
vmacro09835 Vaccinium macrocarpon HOM05D004671 ORTHO05D005638 6.2e-118 428.3 384 59.6
TAR629G1771 Trochodendron aralioides HOM05D004671 ORTHO05D005638 3.4e-116 422.5 386 59.6
Migut.K00770 Erythranthe guttata HOM05D004671 ORTHO05D005638 1.3e-115 420.6 383 57.7
Cpa.g.sc107.62 Carica papaya HOM05D004671 ORTHO05D005638 1.3e-110 404.1 383 55.4
DCAR_010301 Daucus carota HOM05D004671 ORTHO05D005638 1.6e-110 403.7 388 55.4
Thecc.03G178300 Theobroma cacao HOM05D004671 ORTHO05D005638 1.6e-110 403.7 388 55.7
DCAR_015049 Daucus carota HOM05D004671 ORTHO05D005638 4.8e-110 402.1 388 55.4
Eucgr.K00269 Eucalyptus grandis HOM05D004671 ORTHO05D005638 7.6e-108 394.8 387 54.3
SGA_v2.0_scaffold60G21057 Striga asiatica HOM05D004671 ORTHO05D005638 6.5e-107 391.7 389 53.2
Duzib205G1877 Durio zibethinus HOM05D004671 ORTHO05D005638 3.2e-106 389.4 412 52.4
SalBow1G2445 Salvia bowleyana HOM05D004671 ORTHO05D005638 3.2e-106 389.4 376 57.4
vmacro21316 Vaccinium macrocarpon HOM05D004671 ORTHO05D005638 5.5e-106 388.7 334 60.8
CiPaw.03G107600 Carya illinoinensis HOM05D004671 ORTHO05D005638 7.1e-106 388.3 380 55.5
Manes.14G025200 Manihot esculenta HOM05D004671 ORTHO05D005638 2.1e-105 386.7 384 53.4
SalBow1G5895 Salvia bowleyana HOM05D004671 ORTHO05D005638 8.7e-104 381.3 386 56.0
Cfa002753 Carpinus fangiana HOM05D004671 ORTHO05D005638 1.5e-103 380.6 383 54.0
Ciclev10004721m.g Citrus clementina HOM05D004671 ORTHO05D005638 7.4e-103 378.3 383 53.8
Rhsim09G0198100 Rhododendron simsii HOM05D004671 ORTHO05D005638 9.6e-103 377.9 359 57.1
ECA233G0868 Erigeron canadensis HOM05D004671 ORTHO05D005638 4.8e-102 375.6 390 54.1
CANSAT21G1295 Cannabis sativa HOM05D004671 ORTHO05D005638 1.1e-101 374.4 389 54.2
CANSAT21G1725 Cannabis sativa HOM05D004671 ORTHO05D005638 1.1e-101 374.4 389 54.2
Nn3g16880 Nelumbo nucifera HOM05D004671 ORTHO05D005638 1.1e-101 374.4 364 55.8
PGR142G1152 Punica granatum HOM05D004671 ORTHO05D005638 1.3e-99 367.5 384 54.7
Cfa022980 Carpinus fangiana HOM05D004671 ORTHO05D005638 1.7e-99 367.1 381 51.4
COL.COLO4_14329 Corchorus olitorius HOM05D004671 ORTHO05D005638 6.5e-99 365.2 388 50.3
Atru.chr1.442 Acer truncatum HOM05D004671 ORTHO05D005638 2.5e-98 363.2 380 51.3
HanXRQChr15g0497081 Helianthus annuus HOM05D004671 ORTHO05D005638 3.2e-98 362.8 394 52.8
Lsat_1_v5_gn_8_8441 Lactuca sativa HOM05D004671 ORTHO05D005638 9.3e-98 361.3 388 51.8
HanXRQChr10g0304161 Helianthus annuus HOM05D004671 ORTHO05D005638 1.6e-97 360.5 395 52.9
HanXRQChr06g0163751 Helianthus annuus HOM05D004671 ORTHO05D005638 5.1e-96 355.5 386 51.6
Prupe.2G295500 Prunus persica HOM05D004671 ORTHO05D005638 8.7e-96 354.8 394 49.5
Gohir.D09G042500 Gossypium hirsutum HOM05D004671 ORTHO05D005638 3.3e-95 352.8 384 50.8
FvH4_7g29570 Fragaria vesca HOM05D004671 ORTHO05D005638 5.7e-95 352.1 392 50.8
Gohir.A09G041700 Gossypium hirsutum HOM05D004671 ORTHO05D005638 5.7e-95 352.1 384 52.1
Sc13g0008790 Simmondsia chinensis HOM05D004671 ORTHO05D005638 1.3e-94 350.9 391 48.3
ClCG05G008100 Citrullus lanatus HOM05D004671 ORTHO05D005638 1.6e-94 350.5 382 49.7
Gorai.006G048800 Gossypium raimondii HOM05D004671 ORTHO05D005638 2.2e-94 350.1 384 51.3
FAN03G0738 Fragaria x ananassa HOM05D004671 ORTHO05D005638 3.1e-93 346.3 399 50.1
Lalb_Chr06g0161161 Lupinus albus HOM05D004671 ORTHO05D005638 3.1e-93 346.3 384 51.0
FAN01G2609 Fragaria x ananassa HOM05D004671 ORTHO05D005638 1.2e-92 344.4 397 50.1
FAN10G4176 Fragaria x ananassa HOM05D004671 ORTHO05D005638 1.2e-92 344.4 394 50.8
MD07G1271200 Malus domestica HOM05D004671 ORTHO05D005638 2.0e-92 343.6 382 49.0
FAN06G5094 Fragaria x ananassa HOM05D004671 ORTHO05D005638 2.6e-92 343.2 400 50.2
FAN10G3685 Fragaria x ananassa HOM05D004671 ORTHO05D005638 3.4e-92 342.8 394 50.5
MD01G1202100 Malus domestica HOM05D004671 ORTHO05D005638 5.9e-92 342.0 382 49.7
Phvul.007G071300 Phaseolus vulgaris HOM05D004671 ORTHO05D005638 2.2e-91 340.1 381 49.6
CsaV3_3G017180 Cucumis sativus L. HOM05D004671 ORTHO05D005638 2.9e-91 339.7 383 49.9
FAN06G3892 Fragaria x ananassa HOM05D004671 ORTHO05D005638 2.9e-91 339.7 414 49.0
Sed0027520 Sechium edule HOM05D004671 ORTHO05D005638 6.5e-91 338.6 382 48.7
Aqoxy3G03421 Aquilegia oxysepala HOM05D004671 ORTHO05D005638 8.5e-91 338.2 389 49.4
arahy.Tifrunner.gnm1.ann1.U8RPI8 Arachis hypogaea HOM05D004671 ORTHO05D005638 1.1e-90 337.8 399 47.4
GSVIVG01017918001 Vitis vinifera HOM05D004671 ORTHO05D005638 1.4e-90 337.4 384 49.5
Lsat_1_v5_gn_3_14041 Lactuca sativa HOM05D004671 ORTHO05D005638 2.5e-90 336.7 388 49.5
Haze_25041 Corylus avellana HOM05D004671 ORTHO05D005638 5.5e-90 335.5 339 54.3
arahy.Tifrunner.gnm1.ann1.V0I5I8 Arachis hypogaea HOM05D004671 ORTHO05D005638 7.2e-90 335.1 396 46.7
SHI26612 Sapria himalayana HOM05D004671 ORTHO05D005638 9.4e-90 334.7 388 49.2
Glyma.20G159500 Glycine max HOM05D004671 ORTHO05D005638 2.1e-89 333.6 383 50.9
PSO063G7539 Papaver somniferum HOM05D004671 ORTHO05D005638 4.6e-89 332.4 386 49.5
EL10Ac3g05622 Beta vulgaris HOM05D004671 ORTHO05D005638 6.1e-89 332.0 389 48.6
Haze_13677 Corylus avellana HOM05D004671 ORTHO05D005638 6.1e-89 332.0 348 51.1
TWI14G0685 Tripterygium wilfordii HOM05D004671 ORTHO05D005638 6.1e-89 332.0 376 50.8
PSO017G5643 Papaver somniferum HOM05D004671 ORTHO05D005638 1.4e-88 330.9 386 49.2
Aa31LG4G17500 Aethionema arabicum HOM05D004671 ORTHO05D005638 1.8e-88 330.5 390 48.5
VMungo0720G2100 Vigna mungo HOM05D004671 ORTHO05D005638 2.3e-88 330.1 389 48.6
THA.LOC104818634 Tarenaya hassleriana HOM05D004671 ORTHO05D005638 6.7e-88 328.6 389 47.0
RcHm_v2.0_Chr1g0377571 Rosa chinensis HOM05D004671 ORTHO05D005638 1.5e-87 327.4 404 48.8
Potri.015G144900 Populus trichocarpa HOM05D004671 ORTHO05D005638 2.0e-87 327.0 394 48.5
unitig_37.g12531 Utricularia gibba HOM05D004671 ORTHO05D005638 2.0e-87 327.0 394 50.0
Glyma.10G234800 Glycine max HOM05D004671 ORTHO05D005638 5.7e-87 325.5 385 48.3
Sc13g0008760 Simmondsia chinensis HOM05D004671 ORTHO05D005638 8.2e-86 321.6 389 45.8
AL6G42740 Arabidopsis lyrata HOM05D004671 ORTHO05D005638 1.4e-85 320.9 390 46.9
AL5G28510 Arabidopsis lyrata HOM05D004671 ORTHO05D005638 4.1e-85 319.3 390 46.9
AT3G49000 Arabidopsis thaliana HOM05D004671 ORTHO05D005638 5.3e-85 318.9 391 46.8
Actinidia03123 Actinidia chinensis HOM05D004671 ORTHO05D005638 9.1e-85 318.2 298 58.7
Sabra15G0154400 Salix brachista HOM05D004671 ORTHO05D005638 2.0e-84 317.0 409 46.0
Thhalv10010290m.g Eutrema salsugineum HOM05D004671 ORTHO05D005638 1.3e-83 314.3 388 47.9
Sp5g13050 Schrenkiella parvula HOM05D004671 ORTHO05D005638 5.0e-83 312.4 390 47.2
AUR62015967 Chenopodium quinoa HOM05D004671 ORTHO05D005638 1.4e-82 310.8 411 43.8
Ca_10754_v3 Cicer arietinum L. HOM05D004671 ORTHO05D005638 1.4e-82 310.8 388 45.4
Oeu004097.1 Olea europaea HOM05D004671 ORTHO05D005638 4.2e-82 309.3 216 72.7
Lj5g0019412 Lotus japonicus HOM05D004671 ORTHO05D005638 5.1e-80 302.4 386 45.6
Psat6g198360 Pisum sativum HOM05D004671 ORTHO05D005638 1.1e-79 301.2 389 45.2
BcaB02g09572 Brassica carinata HOM05D004671 ORTHO05D005638 9.7e-79 298.1 388 45.4
BcaC01g02382 Brassica carinata HOM05D004671 ORTHO05D005638 3.7e-78 296.2 390 45.4
BolC3t18845H Brassica oleracea HOM05D004671 ORTHO05D005638 3.7e-78 296.2 390 45.4
C03p65870 Brassica napus HOM05D004671 ORTHO05D005638 8.2e-78 295.0 390 45.1
A06p28000 Brassica napus HOM05D004671 ORTHO05D005638 5.3e-77 292.4 390 44.4
BraA06t25741Z Brassica rapa HOM05D004671 ORTHO05D005638 3.5e-76 289.7 390 43.8
TPR.G27007 Trifolium pratense HOM05D004671 ORTHO05D005638 3.5e-76 289.7 389 45.0
CDE04G3622 Ceratophyllum demersum HOM05D004671 ORTHO05D005638 2.2e-75 287.0 340 47.9
arahy.Tifrunner.gnm1.ann1.R5FQEP Arachis hypogaea HOM05D004671 ORTHO05D005638 6.5e-75 285.4 396 43.7
CARHR157820 Cardamine hirsuta HOM05D004671 ORTHO05D005638 8.5e-75 285.0 391 43.2
RcHm_v2.0_Chr6g0258831 Rosa chinensis HOM05D004671 ORTHO05D005638 8.5e-75 285.0 386 44.6
MELO3C031814.2 Cucumis melo HOM05D004671 ORTHO05D005638 2.5e-74 283.5 329 48.6
Migut.K01220 Erythranthe guttata HOM05D004671 ORTHO05D005638 3.2e-74 283.1 265 57.0
Ah.13g068640 Amaranthus hybridus HOM05D004671 ORTHO05D005638 3.6e-73 279.6 382 42.7
Thhalv10003189m.g Eutrema salsugineum HOM05D004671 ORTHO05D005638 6.1e-73 278.9 388 43.8
Medtr1g101100 Medicago truncatula HOM05D004671 ORTHO05D005638 4.0e-72 276.2 385 42.1
AUR62021173 Chenopodium quinoa HOM05D004671 ORTHO05D005638 5.2e-72 275.8 386 43.0
Carub.0005s1517 Capsella rubella HOM05D004671 ORTHO05D005638 1.5e-71 274.2 397 43.3
QL09p013914 Quercus lobata HOM05D004671 ORTHO05D005638 1.5e-71 274.2 278 54.3
HPP92_020192 Vanilla planifolia HOM05D004671 ORTHO05D005638 4.4e-71 272.7 380 41.8
CSS0035516 Camellia sinensis var. sinensis HOM05D004671 ORTHO05D005638 4.8e-70 269.2 267 56.9
Hund04757 Selenicereus undatus HOM05D004671 ORTHO05D005638 1.7e-67 260.8 385 41.0
Carub.0004s0531 Capsella rubella HOM05D004671 ORTHO05D005638 1.9e-66 257.3 393 40.2
ATR0737G144 Amborella trichopoda HOM05D004671 ORTHO05D005638 3.0e-64 250.0 383 41.3
Sed0007536 Sechium edule HOM05D004671 ORTHO05D005638 9.8e-63 245.0 288 47.6
Ah.13g076510 Amaranthus hybridus HOM05D004671 ORTHO05D007692 8.3e-62 241.9 344 43.0
arahy.Tifrunner.gnm1.ann1.4LKL39 Arachis hypogaea HOM05D004671 ORTHO05D005638 1.5e-58 231.1 339 41.6
MD07G1271300 Malus domestica HOM05D004671 ORTHO05D005638 5.5e-58 229.2 251 49.8
Mapoly0133s0004 Marchantia polymorpha HOM05D004671 ORTHO05D005638 1.4e-53 214.5 409 37.2
Sc13g0008680 Simmondsia chinensis HOM05D004671 ORTHO05D005638 2.4e-53 213.8 324 40.7
Pp3c16_7220 Physcomitrium patens HOM05D004671 ORTHO05D005638 1.2e-52 211.5 416 37.3
AagrBONN_evm.TU.Sc2ySwM_344.423 Anthoceros agrestis HOM05D004671 ORTHO05D005638 1.5e-50 204.5 412 35.2
Zm00001eb160040 Zea mays HOM05D004671 ORTHO05D005638 6.1e-49 199.1 379 35.9
Os01g0679000 Oryza sativa ssp. japonica HOM05D004671 ORTHO05D005638 1.8e-48 197.6 379 36.1
HanXRQChr06g0163701 Helianthus annuus HOM05D001754 ORTHO05D005638 2.9e-46 190.3 348 37.6
Oeu002719.1 Olea europaea HOM05D004671 ORTHO05D005638 1.6e-44 184.5 230 50.0
SMO143G0293 Selaginella moellendorffii HOM05D004671 ORTHO05D005638 1.7e-35 154.5 343 34.1
SMO276G0042 Selaginella moellendorffii HOM05D004671 ORTHO05D005638 5.0e-35 152.9 306 36.6
BolC8t50021H Brassica oleracea HOM05D004671 ORTHO05D005638 1.9e-34 151.0 154 48.1
C08p23970 Brassica napus HOM05D004671 ORTHO05D005638 4.3e-34 149.8 154 48.7
BcaC07g39376 Brassica carinata HOM05D004671 ORTHO05D005638 4.0e-32 143.3 149 47.7
BcaB01g00761 Brassica carinata HOM05D004671 ORTHO05D005638 1.9e-29 134.4 213 39.0
CAN.G527.1 Capsicum annuum HOM05D004671 ORTHO05D005638 4.3e-18 96.7 58 82.8
Cre16.g673900 Chlamydomonas reinhardtii HOM05D004671 ORTHO05D005638 2.8e-17 94.0 299 26.4
MCO01G383 Micromonas commoda HOM05D004671 ORTHO05D005638 2.8e-17 94.0 297 26.3
CBR_g5701 Chara braunii HOM05D004671 ORTHO05D005638 6.2e-17 92.8 187 28.9
AL5G14400 Arabidopsis lyrata HOM05D004671 ORTHO05D005638 5.8e-15 86.3 280 28.6
CAN.G432.4 Capsicum annuum HOM05D002050 ORTHO05D001949 6.4e-14 82.8 50 78.0
CAN.G142.9 Capsicum annuum HOM05D000388 ORTHO05D000473 8.4e-14 82.4 49 79.6
HanXRQChr06g0163721 Helianthus annuus HOM05D004671 ORTHO05D005638 1.8e-08 64.7 73 47.9
CBR_g26425 Chara braunii HOM05D004671 ORTHO05D005638 4.0e-08 63.5 112 33.9


User provided reference genes

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