Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc06g035820.1 Solanum lycopersicum HOM05D005649 ORTHO05D006837 1.2e-49 199.5 100 100.0
PGSC0003DMG400004517 Solanum tuberosum HOM05D000087 ORTHO05D000439 4.2e-34 147.9 85 82.4
CAN.G28.8 Capsicum annuum HOM05D005649 ORTHO05D006837 2.7e-33 145.2 98 75.5
Peaxi162Scf00040g00425 Petunia axillaris HOM05D005649 ORTHO05D006837 5.8e-28 127.5 93 68.8
Nitab4.5_0002107g0070 Nicotiana tabacum HOM05D005649 ORTHO05D006837 1.4e-26 122.9 95 62.1
CAN.G769.4 Capsicum annuum HOM05D005649 ORTHO05D006837 1.2e-25 119.8 96 59.4
Hma1.2p1_1323F.1_g275520 Hydrangea macrophylla HOM05D005649 ORTHO05D006837 3.9e-24 114.8 88 60.2
Nitab4.5_0004480g0060 Nicotiana tabacum HOM05D005649 ORTHO05D006837 3.3e-23 111.7 92 63.0
Solyc03g026115.1 Solanum lycopersicum HOM05D005649 ORTHO05D006837 3.3e-23 111.7 93 59.1
Ciclev10006307m.g Citrus clementina HOM05D005649 ORTHO05D006837 3.6e-22 108.2 96 52.1
Atru.chr1.509 Acer truncatum HOM05D005649 ORTHO05D006837 1.1e-21 106.7 103 50.5
Actinidia03109 Actinidia chinensis HOM05D005649 ORTHO05D006837 1.1e-21 106.7 99 52.5
Sc13g0008480 Simmondsia chinensis HOM05D005649 ORTHO05D006837 1.8e-21 105.9 91 51.6
Oeu062770.1 Olea europaea HOM05D005649 ORTHO05D006837 3.1e-21 105.1 100 52.0
DCAR_014595 Daucus carota HOM05D005649 ORTHO05D006837 5.3e-21 104.4 95 47.4
EL10Ac3g05710 Beta vulgaris HOM05D005649 ORTHO05D006837 1.2e-20 103.2 90 52.2
PGR042G0682 Punica granatum HOM05D005649 ORTHO05D006837 2.0e-20 102.4 96 51.0
Dinv35188 Davidia involucrata HOM05D005649 ORTHO05D006837 5.8e-20 100.9 93 50.5
Potri.012G137400 Populus trichocarpa HOM05D005649 ORTHO05D006837 5.8e-20 100.9 96 52.1
CSS0017664 Camellia sinensis var. sinensis HOM05D005649 ORTHO05D006837 7.6e-20 100.5 99 49.5
CiPaw.03G103300 Carya illinoinensis HOM05D005649 ORTHO05D006837 7.6e-20 100.5 100 51.0
Potri.015G139100 Populus trichocarpa HOM05D005649 ORTHO05D006837 7.6e-20 100.5 96 50.0
DCAR_018179 Daucus carota HOM05D005649 ORTHO05D006837 9.9e-20 100.1 100 49.0
Sabra15G0150200 Salix brachista HOM05D005649 ORTHO05D006837 9.9e-20 100.1 96 49.0
Peaxi162Scf00132g01516 Petunia axillaris HOM05D005649 ORTHO05D006837 1.3e-19 99.8 88 59.1
DCAR_018177 Daucus carota HOM05D005649 ORTHO05D006837 2.2e-19 99.0 101 49.5
Solyc01g009590.3 Solanum lycopersicum HOM05D005649 ORTHO05D006837 2.2e-19 99.0 77 58.4
Gohir.D09G040900 Gossypium hirsutum HOM05D005649 ORTHO05D006837 3.8e-19 98.2 96 47.9
CAN.G166.5 Capsicum annuum HOM05D005649 ORTHO05D006837 4.9e-19 97.8 95 51.6
Haze_13744 Corylus avellana HOM05D005649 ORTHO05D006837 8.4e-19 97.1 100 44.0
FvH4_7g29091 Fragaria vesca HOM05D005649 ORTHO05D006837 1.1e-18 96.7 98 43.9
FAN03G0279 Fragaria x ananassa HOM05D005649 ORTHO05D006837 1.1e-18 96.7 98 43.9
Sopen01g005120 Solanum pennellii HOM05D005649 ORTHO05D006837 1.4e-18 96.3 77 57.1
Sed0025700 Sechium edule HOM05D005649 ORTHO05D006837 1.9e-18 95.9 95 50.5
AUR62016019 Chenopodium quinoa HOM05D005649 ORTHO05D006837 2.4e-18 95.5 89 43.8
MD01G1197500 Malus domestica HOM05D005649 ORTHO05D006837 2.4e-18 95.5 83 50.6
CiPaw.04G066700 Carya illinoinensis HOM05D005649 ORTHO05D006837 3.2e-18 95.1 95 43.2
Thecc.03G171600 Theobroma cacao HOM05D005649 ORTHO05D006837 3.2e-18 95.1 97 47.4
Ah.07g209060 Amaranthus hybridus HOM05D005649 ORTHO05D006837 4.2e-18 94.7 85 50.6
AUR62021224 Chenopodium quinoa HOM05D005649 ORTHO05D006837 5.4e-18 94.4 92 44.6
Duzib068G0970 Durio zibethinus HOM05D005649 ORTHO05D006837 5.4e-18 94.4 63 58.7
Migut.F00365 Erythranthe guttata HOM05D005649 ORTHO05D006837 7.1e-18 94.0 95 49.5
SalBow6G6599 Salvia bowleyana HOM05D000001 ORTHO05D010467 7.1e-18 94.0 72 48.6
TAR629G2474 Trochodendron aralioides HOM05D005649 ORTHO05D006837 7.1e-18 94.0 95 45.3
Actinidia34088 Actinidia chinensis HOM05D005649 ORTHO05D006837 9.3e-18 93.6 108 46.3
SalBow6G0552 Salvia bowleyana HOM05D000001 ORTHO05D010467 9.3e-18 93.6 72 48.6
TPR.G17428 Trifolium pratense HOM05D005649 ORTHO05D006837 9.3e-18 93.6 95 48.4
Aqoxy7G00428 Aquilegia oxysepala HOM05D005649 ORTHO05D006837 1.2e-17 93.2 95 46.3
Phvul.004G120100 Phaseolus vulgaris HOM05D005649 ORTHO05D006837 1.2e-17 93.2 91 46.2
Prupe.2G290900 Prunus persica HOM05D005649 ORTHO05D006837 1.2e-17 93.2 90 46.7
CANSAT21G0877 Cannabis sativa HOM05D005649 ORTHO05D006837 1.6e-17 92.8 96 45.8
RcHm_v2.0_Chr1g0376811 Rosa chinensis HOM05D005649 ORTHO05D006837 3.5e-17 91.7 98 44.9
HanXRQChr14g0462161 Helianthus annuus HOM05D005649 ORTHO05D006837 4.6e-17 91.3 90 51.1
THA.LOC109117151 Tarenaya hassleriana HOM05D005649 ORTHO05D006837 4.6e-17 91.3 63 58.7
Migut.F01138 Erythranthe guttata HOM05D005649 ORTHO05D006837 1.0e-16 90.1 85 41.2
Duzib084G1193 Durio zibethinus HOM05D005649 ORTHO05D006837 1.3e-16 89.7 96 42.7
MELO3C006883.2 Cucumis melo HOM05D005649 ORTHO05D006837 2.3e-16 89.0 95 46.3
Eucgr.K00231 Eucalyptus grandis HOM05D005649 ORTHO05D006837 2.3e-16 89.0 93 48.4
PSO478G4859 Papaver somniferum HOM05D005649 ORTHO05D006837 2.3e-16 89.0 87 49.4
CsaV3_3G016880 Cucumis sativus L. HOM05D005649 ORTHO05D006837 3.0e-16 88.6 97 49.5
Gohir.A11G009800 Gossypium hirsutum HOM05D005649 ORTHO05D006837 3.0e-16 88.6 102 42.2
Gohir.D11G009100 Gossypium hirsutum HOM05D005649 ORTHO05D006837 3.0e-16 88.6 102 42.2
Gorai.007G010700 Gossypium raimondii HOM05D005649 ORTHO05D006837 3.0e-16 88.6 102 42.2
Gohir.D12G260900 Gossypium hirsutum HOM05D005649 ORTHO05D006837 3.9e-16 88.2 98 43.9
Gorai.008G279600 Gossypium raimondii HOM05D005649 ORTHO05D006837 3.9e-16 88.2 98 43.9
Medtr1g101360 Medicago truncatula HOM05D005649 ORTHO05D006837 3.9e-16 88.2 95 45.3
SalBow2G3129 Salvia bowleyana HOM05D005649 ORTHO05D006837 3.9e-16 88.2 74 45.9
Gohir.A12G260100 Gossypium hirsutum HOM05D005649 ORTHO05D006837 5.1e-16 87.8 98 43.9
Psat0s6119g0040 Pisum sativum HOM05D005649 ORTHO05D006837 5.1e-16 87.8 83 45.8
PSO782G3448 Papaver somniferum HOM05D005649 ORTHO05D006837 6.7e-16 87.4 87 48.3
Glyma.09G144000 Glycine max HOM05D005649 ORTHO05D006837 8.7e-16 87.0 95 44.2
Glyma.16G197100 Glycine max HOM05D005649 ORTHO05D006837 8.7e-16 87.0 84 44.0
PSO782G2995 Papaver somniferum HOM05D005649 ORTHO05D006837 1.1e-15 86.7 87 47.1
CARHR265080 Cardamine hirsuta HOM05D005649 ORTHO05D006837 1.5e-15 86.3 92 43.5
Thhalv10015124m.g Eutrema salsugineum HOM05D005649 ORTHO05D006837 1.5e-15 86.3 64 53.1
Sp6g14410 Schrenkiella parvula HOM05D005649 ORTHO05D006837 1.5e-15 86.3 93 40.9
SGA_v2.0_scaffold10G05368 Striga asiatica HOM05D005649 ORTHO05D006837 1.9e-15 85.9 80 47.5
COL.COLO4_14273 Corchorus olitorius HOM05D005649 ORTHO05D006837 2.5e-15 85.5 95 42.1
Lj2g0004156 Lotus japonicus HOM05D005649 ORTHO05D006837 2.5e-15 85.5 82 46.3
TWI63G0636 Tripterygium wilfordii HOM05D005649 ORTHO05D006837 2.5e-15 85.5 95 46.3
AT5G52160 Arabidopsis thaliana HOM05D005649 ORTHO05D006837 3.3e-15 85.1 96 41.7
Cpa.g.sc107.18 Carica papaya HOM05D005649 ORTHO05D006837 3.3e-15 85.1 90 42.2
Lsat_1_v5_gn_2_132960 Lactuca sativa HOM05D005649 ORTHO05D006837 3.3e-15 85.1 90 46.7
AL8G26550 Arabidopsis lyrata HOM05D005649 ORTHO05D006837 4.3e-15 84.7 92 43.5
C03p18480 Brassica napus HOM05D005649 ORTHO05D006837 9.6e-15 83.6 72 44.4
Carub.0008s1225 Capsella rubella HOM05D005649 ORTHO05D006837 9.6e-15 83.6 64 51.6
Ca_10790_v3 Cicer arietinum L. HOM05D005649 ORTHO05D006837 9.6e-15 83.6 95 43.2
BcaB01g04189 Brassica carinata HOM05D005649 ORTHO05D006837 1.3e-14 83.2 95 37.9
C09p41580 Brassica napus HOM05D005649 ORTHO05D006837 1.3e-14 83.2 87 41.4
BolC9t57041H Brassica oleracea HOM05D005649 ORTHO05D006837 1.3e-14 83.2 77 44.2
BraA03t10871Z Brassica rapa HOM05D005649 ORTHO05D006837 1.6e-14 82.8 88 38.6
Cc02_g03310 Coffea canephora HOM05D005649 ORTHO05D006837 1.6e-14 82.8 90 41.1
Lalb_Chr19g0130991 Lupinus albus HOM05D005649 ORTHO05D006837 1.6e-14 82.8 98 43.9
A03p15810 Brassica napus HOM05D005649 ORTHO05D006837 2.1e-14 82.4 84 41.7
A10p09850 Brassica napus HOM05D005649 ORTHO05D006837 2.1e-14 82.4 63 52.4
BraA10t43066Z Brassica rapa HOM05D005649 ORTHO05D006837 2.1e-14 82.4 63 52.4
Manes.14G028300 Manihot esculenta HOM05D005649 ORTHO05D006837 2.1e-14 82.4 95 40.0
Sed0000609 Sechium edule HOM05D005649 ORTHO05D006837 2.1e-14 82.4 83 44.6
BcaC01g06166 Brassica carinata HOM05D005649 ORTHO05D006837 2.8e-14 82.0 88 38.6
BcaC01g06170 Brassica carinata HOM05D005649 ORTHO05D006837 2.8e-14 82.0 88 38.6
BolC3t14245H Brassica oleracea HOM05D005649 ORTHO05D006837 2.8e-14 82.0 88 38.6
AL8G38860 Arabidopsis lyrata HOM05D005649 ORTHO05D006837 8.1e-14 80.5 95 45.3
Aa31LG3G8540 Aethionema arabicum HOM05D005649 ORTHO05D006837 1.4e-13 79.7 87 34.5
AT5G62080 Arabidopsis thaliana HOM05D005649 ORTHO05D006837 1.4e-13 79.7 95 44.2
Nn8g41026 Nelumbo nucifera HOM05D005649 ORTHO05D006837 1.8e-13 79.3 99 43.4
BcaB08g35564 Brassica carinata HOM05D005649 ORTHO05D006837 3.1e-13 78.6 62 51.6
Sp6g35660 Schrenkiella parvula HOM05D005649 ORTHO05D006837 3.1e-13 78.6 84 44.0
FAN03G1726 Fragaria x ananassa HOM05D005649 ORTHO05D006837 9.0e-13 77.0 52 55.8
Lalb_Chr01g0009161 Lupinus albus HOM05D005649 ORTHO05D006837 9.0e-13 77.0 86 44.2
Nn1g01375 Nelumbo nucifera HOM05D005649 ORTHO05D006837 9.0e-13 77.0 89 40.4
QL09p014765 Quercus lobata HOM05D005649 ORTHO05D006837 1.5e-12 76.3 99 41.4
Carub.0008s2276 Capsella rubella HOM05D005649 ORTHO05D006837 2.0e-12 75.9 86 45.3
HPP92_025369 Vanilla planifolia HOM05D005649 ORTHO05D006837 2.0e-12 75.9 65 47.7
HPP92_025495 Vanilla planifolia HOM05D005649 ORTHO05D006837 2.0e-12 75.9 97 41.2
ATR0757G068 Amborella trichopoda HOM05D005649 ORTHO05D006837 3.4e-12 75.1 62 48.4
CARHR275870 Cardamine hirsuta HOM05D005649 ORTHO05D006837 3.4e-12 75.1 86 45.3
Thhalv10005193m.g Eutrema salsugineum HOM05D005649 ORTHO05D006837 7.6e-12 73.9 63 50.8
BcaC06g32460 Brassica carinata HOM05D005649 ORTHO05D006837 1.0e-11 73.6 63 47.6
A10p28990 Brassica napus HOM05D005649 ORTHO05D006837 1.0e-11 73.6 84 40.5
BraA10t44947Z Brassica rapa HOM05D005649 ORTHO05D006837 1.0e-11 73.6 84 40.5
Thhalv10015126m.g Eutrema salsugineum HOM05D005649 ORTHO05D006837 1.0e-11 73.6 92 40.2
CARHR205910 Cardamine hirsuta HOM05D005649 ORTHO05D006837 1.3e-11 73.2 84 45.2
CDE11G0782 Ceratophyllum demersum HOM05D005649 ORTHO05D006837 1.3e-11 73.2 92 34.8
AL6G17460 Arabidopsis lyrata HOM05D005649 ORTHO05D006837 1.7e-11 72.8 63 49.2
C09p69350 Brassica napus HOM05D005649 ORTHO05D006837 1.7e-11 72.8 84 39.3
BolC9t59679H Brassica oleracea HOM05D005649 ORTHO05D006837 1.7e-11 72.8 84 39.3
Carub.0006s0617 Capsella rubella HOM05D005649 ORTHO05D006837 1.7e-11 72.8 63 47.6
Sp2g25250 Schrenkiella parvula HOM05D005649 ORTHO05D006837 1.7e-11 72.8 65 50.8
PSO782G4359 Papaver somniferum HOM05D005649 ORTHO05D006837 4.9e-11 71.2 85 41.2
AT5G07230 Arabidopsis thaliana HOM05D005649 ORTHO05D006837 2.5e-10 68.9 63 46.0
Aa31LG2G14300 Aethionema arabicum HOM05D005649 ORTHO05D006837 4.2e-10 68.2 94 35.1
TAR636G3290 Trochodendron aralioides HOM05D000087 ORTHO05D000439 1.0e-08 63.5 66 45.5
SEGI_28459 Sequoiadendron giganteum HOM05D005649 ORTHO05D006837 1.8e-08 62.8 85 37.6
SEGI_28530 Sequoiadendron giganteum HOM05D005649 ORTHO05D006837 1.5e-07 59.7 87 35.6
Aa31LG2G14310 Aethionema arabicum HOM05D005649 ORTHO05D006837 5.7e-07 57.8 68 38.2
Zm00001eb198610 Zea mays HOM05D005649 ORTHO05D006837 3.7e-06 55.1 62 35.5


User provided reference genes

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