Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc06g034180.2 Solanum lycopersicum HOM05D004234 ORTHO05D004670 1.2e-194 682.9 339 100.0
PGSC0003DMG400021593 Solanum tuberosum HOM05D004234 ORTHO05D004670 2.3e-124 449.5 330 72.7
Peaxi162Scf00304g01343 Petunia axillaris HOM05D004234 ORTHO05D004670 2.9e-119 432.6 340 70.0
Nitab4.5_0000262g0110 Nicotiana tabacum HOM05D004234 ORTHO05D004670 6.2e-114 414.8 315 72.4
Nitab4.5_0002816g0120 Nicotiana tabacum HOM05D004234 ORTHO05D004670 1.0e-108 397.5 331 64.7
Peaxi162Scf00241g00030 Petunia axillaris HOM05D004234 ORTHO05D004670 2.3e-108 396.4 333 64.3
Sopen06g015930 Solanum pennellii HOM05D004234 ORTHO05D000001 1.1e-105 387.5 229 87.3
Sopen03g024080 Solanum pennellii HOM05D004234 ORTHO05D004670 1.6e-101 373.6 334 61.7
Solyc03g093300.3 Solanum lycopersicum HOM05D004234 ORTHO05D004670 1.1e-99 367.5 334 60.8
Nitab4.5_0000448g0090 Nicotiana tabacum HOM05D004234 ORTHO05D004670 7.3e-99 364.8 308 65.9
CAN.G330.4 Capsicum annuum HOM05D004234 ORTHO05D004670 3.6e-98 362.5 333 61.3
CSS0018772 Camellia sinensis var. sinensis HOM05D004234 ORTHO05D004670 3.4e-96 355.9 335 58.8
Nitab4.5_0003490g0020 Nicotiana tabacum HOM05D004234 ORTHO05D004670 1.3e-95 354.0 306 63.4
Dinv06568 Davidia involucrata HOM05D004234 ORTHO05D004670 8.4e-95 351.3 335 58.2
Hma1.2p1_0432F.1_g151850 Hydrangea macrophylla HOM05D004234 ORTHO05D004670 2.7e-93 346.3 334 57.5
Actinidia13581 Actinidia chinensis HOM05D004234 ORTHO05D004670 1.0e-92 344.4 336 57.7
Actinidia31776 Actinidia chinensis HOM05D004234 ORTHO05D004670 1.7e-92 343.6 334 57.5
GSVIVG01014047001 Vitis vinifera HOM05D004234 ORTHO05D004670 1.9e-91 340.1 337 57.9
Ciclev10004769m.g Citrus clementina HOM05D004234 ORTHO05D004670 4.3e-91 339.0 335 57.0
DCAR_014620 Daucus carota HOM05D004234 ORTHO05D004670 4.3e-91 339.0 336 56.2
Lj1A979T78 Lonicera japonica HOM05D004234 ORTHO05D004670 4.3e-91 339.0 335 56.7
Thecc.03G153900 Theobroma cacao HOM05D004234 ORTHO05D004670 7.3e-91 338.2 334 57.2
arahy.Tifrunner.gnm1.ann1.WXBJ4D Arachis hypogaea HOM05D004234 ORTHO05D004670 1.6e-90 337.0 334 56.6
Glyma.09G229600 Glycine max HOM05D004234 ORTHO05D004670 2.8e-90 336.3 337 57.0
Oeu028187.2 Olea europaea HOM05D004234 ORTHO05D004670 8.1e-90 334.7 341 56.6
Atru.chr1.756 Acer truncatum HOM05D004234 ORTHO05D004670 2.4e-89 333.2 330 57.0
arahy.Tifrunner.gnm1.ann1.11333K Arachis hypogaea HOM05D004234 ORTHO05D004670 2.4e-89 333.2 338 55.3
QL09p005405 Quercus lobata HOM05D004234 ORTHO05D004670 2.4e-89 333.2 337 55.8
Potri.001G125700 Populus trichocarpa HOM05D004234 ORTHO05D004670 4.0e-89 332.4 335 55.8
Sabra03G0074900 Salix brachista HOM05D004234 ORTHO05D004670 5.3e-89 332.0 352 52.8
Lalb_Chr01g0000341 Lupinus albus HOM05D004234 ORTHO05D004670 6.9e-89 331.6 336 56.5
Manes.06G133800 Manihot esculenta HOM05D004234 ORTHO05D004670 9.0e-89 331.3 334 56.9
TWI39G0359 Tripterygium wilfordii HOM05D004234 ORTHO05D004670 1.5e-88 330.5 337 55.8
VMungo1127G0923 Vigna mungo HOM05D004234 ORTHO05D004670 3.4e-88 329.3 335 56.4
HanXRQChr05g0142531 Helianthus annuus HOM05D004234 ORTHO05D004670 4.5e-88 328.9 334 54.8
Phvul.011G007500 Phaseolus vulgaris HOM05D004234 ORTHO05D004670 4.5e-88 328.9 338 56.2
Gohir.D03G106600 Gossypium hirsutum HOM05D004234 ORTHO05D004670 7.6e-88 328.2 333 55.3
Gorai.003G113100 Gossypium raimondii HOM05D004234 ORTHO05D004670 7.6e-88 328.2 332 55.4
Potri.003G108000 Populus trichocarpa HOM05D004234 ORTHO05D004670 7.6e-88 328.2 334 54.8
Cc02_g04370 Coffea canephora HOM05D004234 ORTHO05D004670 2.2e-87 326.6 336 57.7
Glyma.12G006700 Glycine max HOM05D004234 ORTHO05D004670 3.8e-87 325.9 324 57.7
Gohir.A03G059300 Gossypium hirsutum HOM05D004234 ORTHO05D004670 4.9e-87 325.5 332 54.5
PSO238G0034 Papaver somniferum HOM05D004234 ORTHO05D004670 4.9e-87 325.5 337 54.6
RcHm_v2.0_Chr1g0331961 Rosa chinensis HOM05D004234 ORTHO05D004670 6.4e-87 325.1 334 55.7
Rhsim09G0190900 Rhododendron simsii HOM05D004234 ORTHO05D004670 8.4e-87 324.7 375 50.7
Duzib084G1335 Durio zibethinus HOM05D004234 ORTHO05D004670 1.1e-86 324.3 333 55.0
Medtr4g036835 Medicago truncatula HOM05D004234 ORTHO05D004670 1.1e-86 324.3 333 54.1
Nn6g33942 Nelumbo nucifera HOM05D004234 ORTHO05D004670 1.1e-86 324.3 343 54.2
Gohir.A12G198000 Gossypium hirsutum HOM05D004234 ORTHO05D004670 1.4e-86 323.9 331 54.7
Sc19g0002070 Simmondsia chinensis HOM05D004234 ORTHO05D004670 1.9e-86 323.6 334 57.2
COL.COLO4_14105 Corchorus olitorius HOM05D004234 ORTHO05D004670 2.4e-86 323.2 334 54.8
CsaV3_3G050070 Cucumis sativus L. HOM05D004234 ORTHO05D004670 3.2e-86 322.8 334 55.4
MD07G1252500 Malus domestica HOM05D004234 ORTHO05D004670 4.2e-86 322.4 334 53.0
FAN10G4258 Fragaria x ananassa HOM05D004234 ORTHO05D004670 5.4e-86 322.0 335 53.7
Lj3g0001566 Lotus japonicus HOM05D004234 ORTHO05D004670 5.4e-86 322.0 335 54.6
PGR042G3222 Punica granatum HOM05D004234 ORTHO05D004670 5.4e-86 322.0 335 53.4
MD01G1182200 Malus domestica HOM05D004234 ORTHO05D004670 7.1e-86 321.6 335 53.4
ClCG09G013080 Citrullus lanatus HOM05D004234 ORTHO05D004670 9.3e-86 321.2 333 55.0
FvH4_7g05310 Fragaria vesca HOM05D004234 ORTHO05D004670 9.3e-86 321.2 335 53.4
FAN03G3162 Fragaria x ananassa HOM05D004234 ORTHO05D004670 9.3e-86 321.2 335 53.4
Sed0010040 Sechium edule HOM05D004234 ORTHO05D004670 9.3e-86 321.2 334 54.5
Gohir.D12G200600 Gossypium hirsutum HOM05D004234 ORTHO05D004670 1.2e-85 320.9 331 55.0
Gorai.008G215700 Gossypium raimondii HOM05D004234 ORTHO05D004670 1.2e-85 320.9 331 55.0
Zm00001eb404400 Zea mays HOM05D004234 ORTHO05D004670 2.1e-85 320.1 340 53.5
Medtr1g056720 Medicago truncatula HOM05D004234 ORTHO05D004670 3.5e-85 319.3 335 52.5
SalBow8G0184 Salvia bowleyana HOM05D004234 ORTHO05D004670 3.5e-85 319.3 330 54.5
SalBow8G4519 Salvia bowleyana HOM05D004234 ORTHO05D004670 3.5e-85 319.3 330 54.5
Aqoxy1G01638 Aquilegia oxysepala HOM05D004234 ORTHO05D004670 7.9e-85 318.2 348 52.0
ATR0317G048 Amborella trichopoda HOM05D004234 ORTHO05D004670 1.0e-84 317.8 347 52.4
Aqoxy5G04150 Aquilegia oxysepala HOM05D004234 ORTHO05D004670 1.0e-84 317.8 338 55.0
Prupe.2G276000 Prunus persica HOM05D004234 ORTHO05D004670 3.0e-84 316.2 333 52.9
ECA233G5771 Erigeron canadensis HOM05D004234 ORTHO05D004670 3.9e-84 315.8 333 52.9
Migut.F00484 Erythranthe guttata HOM05D004234 ORTHO05D004670 3.9e-84 315.8 332 53.3
Eucgr.H04780 Eucalyptus grandis HOM05D004234 ORTHO05D004670 5.1e-84 315.5 336 54.8
Os03g0102400 Oryza sativa ssp. japonica HOM05D004234 ORTHO05D004670 1.5e-83 313.9 337 54.3
Lsat_1_v5_gn_1_117561 Lactuca sativa HOM05D004234 ORTHO05D004670 2.5e-83 313.2 332 51.2
Psat7g159560 Pisum sativum HOM05D004234 ORTHO05D004670 7.4e-83 311.6 342 53.8
AUR62015488 Chenopodium quinoa HOM05D004234 ORTHO05D004670 1.3e-82 310.8 368 50.3
Sp2g24650 Schrenkiella parvula HOM05D004234 ORTHO05D004670 1.3e-82 310.8 335 53.4
unitig_46.g18765 Utricularia gibba HOM05D004234 ORTHO05D004670 1.3e-82 310.8 333 54.7
AT5G61450 Arabidopsis thaliana HOM05D004234 ORTHO05D004670 2.8e-82 309.7 335 51.9
HPP92_020352 Vanilla planifolia HOM05D004234 ORTHO05D004670 3.7e-82 309.3 338 55.3
Lsat_1_v5_gn_8_8740 Lactuca sativa HOM05D004234 ORTHO05D004670 4.8e-82 308.9 346 50.0
Carub.0008s2213 Capsella rubella HOM05D004234 ORTHO05D004670 6.2e-82 308.5 335 53.1
Thhalv10004229m.g Eutrema salsugineum HOM05D004234 ORTHO05D004670 8.1e-82 308.1 335 52.5
Os07g0466200 Oryza sativa ssp. japonica HOM05D004234 ORTHO05D004670 1.1e-81 307.8 333 53.5
Sed0020354 Sechium edule HOM05D004234 ORTHO05D004670 5.3e-81 305.4 336 53.0
A03p47040 Brassica napus HOM05D004234 ORTHO05D004670 2.0e-80 303.5 335 51.9
BraA03t13827Z Brassica rapa HOM05D004234 ORTHO05D004670 2.0e-80 303.5 335 51.9
Hund11832 Selenicereus undatus HOM05D004234 ORTHO05D004670 2.6e-80 303.1 318 53.8
BolC7t45034H Brassica oleracea HOM05D004234 ORTHO05D004670 3.4e-80 302.8 335 53.7
AL8G38140 Arabidopsis lyrata HOM05D004234 ORTHO05D004670 4.5e-80 302.4 332 52.4
Nn1g00980 Nelumbo nucifera HOM05D004234 ORTHO05D004670 4.5e-80 302.4 321 52.6
BcaC06g33234 Brassica carinata HOM05D004234 ORTHO05D004670 7.6e-80 301.6 336 52.4
C07p45120 Brassica napus HOM05D004234 ORTHO05D004670 7.6e-80 301.6 336 52.4
TAR636G1879 Trochodendron aralioides HOM05D004234 ORTHO05D004670 3.8e-79 299.3 332 52.4
SGA_v2.0_scaffold2G01218 Striga asiatica HOM05D004234 ORTHO05D004670 4.9e-79 298.9 358 50.6
MELO3C003311.2 Cucumis melo HOM05D004234 ORTHO05D004670 2.5e-78 296.6 405 45.4
Lsat_1_v5_gn_9_51980 Lactuca sativa HOM05D004234 ORTHO05D004670 1.5e-75 287.3 332 49.1
BcaC06g33149 Brassica carinata HOM05D004234 ORTHO05D004670 4.3e-75 285.8 334 50.6
Mapoly0072s0015 Marchantia polymorpha HOM05D004234 ORTHO05D004670 7.4e-75 285.0 412 44.7
MD07G1252600 Malus domestica HOM05D004234 ORTHO05D004670 3.7e-74 282.7 330 48.5
Prupe.2G276100 Prunus persica HOM05D004234 ORTHO05D004670 3.7e-74 282.7 332 47.9
Ca_25531_v3 Cicer arietinum L. HOM05D004234 ORTHO05D004670 1.4e-73 280.8 334 50.0
Duzib205G0275 Durio zibethinus HOM05D004234 ORTHO05D004670 1.4e-73 280.8 307 53.7
Aa31LG11G1950 Aethionema arabicum HOM05D004234 ORTHO05D004670 9.0e-73 278.1 359 47.4
PSO210G3536 Papaver somniferum HOM05D004234 ORTHO05D004670 2.6e-72 276.6 337 49.0
EL10Ac3g05852 Beta vulgaris HOM05D004234 ORTHO05D004670 1.3e-71 274.2 336 50.3
AUR62002211 Chenopodium quinoa HOM05D004234 ORTHO05D004670 4.2e-70 269.2 292 52.7
AagrBONN_evm.TU.Sc2ySwM_117.258 Anthoceros agrestis HOM05D004234 ORTHO05D004670 9.3e-70 268.1 347 47.0
RcHm_v2.0_Chr1g0374151 Rosa chinensis HOM05D004234 ORTHO05D004670 1.2e-69 267.7 332 47.9
FAN10G3280 Fragaria x ananassa HOM05D002503 ORTHO05D004670 1.6e-69 267.3 332 47.3
SMO203G0101 Selaginella moellendorffii HOM05D004234 ORTHO05D004670 2.1e-69 266.9 330 48.8
FvH4_7g27310 Fragaria vesca HOM05D004234 ORTHO05D004670 1.0e-68 264.6 331 45.3
Ah.07g207720 Amaranthus hybridus HOM05D004234 ORTHO05D004670 1.3e-68 264.2 357 47.1
Pp3c2_13380 Physcomitrium patens HOM05D004234 ORTHO05D004670 1.3e-68 264.2 338 47.6
SMO357G0012 Selaginella moellendorffii HOM05D004234 ORTHO05D004670 2.3e-68 263.5 337 47.8
Pp3c14_12080 Physcomitrium patens HOM05D004234 ORTHO05D004670 3.0e-68 263.1 337 46.3
FAN03G2107 Fragaria x ananassa HOM05D002503 ORTHO05D004670 5.1e-68 262.3 332 46.7
FAN06G0557 Fragaria x ananassa HOM05D004234 ORTHO05D004670 3.3e-67 259.6 331 45.0
Pp3c17_11550 Physcomitrium patens HOM05D004234 ORTHO05D004670 4.3e-67 259.2 338 47.0
Lj8A43G57 Lonicera japonica HOM05D004234 ORTHO05D004670 4.8e-66 255.8 362 45.3
FAN03G0204 Fragaria x ananassa HOM05D004234 ORTHO05D004670 1.8e-65 253.8 344 46.2
Lsat_1_v5_gn_1_117520 Lactuca sativa HOM05D004234 ORTHO05D004670 4.1e-65 252.7 319 46.4
Sabra01G0096800 Salix brachista HOM05D004234 ORTHO05D004670 4.1e-65 252.7 278 52.5
arahy.Tifrunner.gnm1.ann1.EHKS3S Arachis hypogaea HOM05D004234 ORTHO05D004670 1.7e-63 247.3 304 50.0
C07p40880 Brassica napus HOM05D004234 ORTHO05D004670 2.1e-61 240.4 334 46.1
BcaNung02453 Brassica carinata HOM05D004234 ORTHO05D004670 2.7e-61 240.0 334 45.5
CiPaw.04G059200 Carya illinoinensis HOM05D004234 ORTHO05D004670 1.8e-60 237.3 218 60.1
BolC7t44614H Brassica oleracea HOM05D004234 ORTHO05D004670 1.1e-57 228.0 337 44.2
CAN.G48.41 Capsicum annuum HOM05D004234 ORTHO05D004670 1.8e-57 227.3 319 44.8
FAN06G1565 Fragaria x ananassa HOM05D004234 ORTHO05D004670 5.3e-57 225.7 140 72.9
Cpa.g.sc4200.1 Carica papaya HOM05D004234 ORTHO05D004670 2.5e-54 216.9 121 86.0
CBR_g12525 Chara braunii HOM05D004234 ORTHO05D004670 3.6e-53 213.0 140 70.0
CARHR275210 Cardamine hirsuta HOM05D004234 ORTHO05D004670 2.0e-51 207.2 275 46.2
Lsat_1_v5_gn_1_117540 Lactuca sativa HOM05D004234 ORTHO05D004670 4.8e-50 202.6 180 60.6
FAN01G2714 Fragaria x ananassa HOM05D004234 ORTHO05D004670 1.4e-49 201.1 335 38.5
FAN10G1071 Fragaria x ananassa HOM05D004234 ORTHO05D004670 5.0e-47 192.6 318 40.9
Haze_13877 Corylus avellana HOM05D004234 ORTHO05D004670 2.8e-34 150.2 197 44.7
vmacro09913 Vaccinium macrocarpon HOM05D004234 ORTHO05D004670 8.6e-23 112.1 57 93.0
SHI13981 Sapria himalayana HOM05D004234 ORTHO05D004670 2.8e-21 107.1 102 57.8
SEGI_30601 Sequoiadendron giganteum HOM05D004234 ORTHO05D004670 3.0e-20 103.6 54 92.6
arahy.Tifrunner.gnm1.ann1.J8KP6L Arachis hypogaea HOM05D004234 ORTHO05D004670 3.7e-18 96.7 51 88.2
arahy.Tifrunner.gnm1.ann1.AYL6ZU Arachis hypogaea HOM05D004234 ORTHO05D004670 6.3e-18 95.9 51 88.2
FvH4_2g12100 Fragaria vesca HOM05D004234 ORTHO05D004670 5.4e-17 92.8 94 48.9
Cre03.g201000 Chlamydomonas reinhardtii HOM05D004234 ORTHO05D004670 9.2e-17 92.0 89 50.6
Gorai.011G181500 Gossypium raimondii HOM05D001733 ORTHO05D004670 1.2e-13 81.6 51 70.6
Gorai.009G415200 Gossypium raimondii HOM05D004234 ORTHO05D004670 5.2e-12 76.3 51 68.6
Gohir.D04G050932 Gossypium hirsutum HOM05D004234 ORTHO05D004670 1.5e-11 74.7 55 63.6
Gorai.012G056500 Gossypium raimondii HOM05D004234 ORTHO05D004670 2.6e-11 73.9 51 66.7
FvH4_c2g00051 Fragaria vesca HOM05D004234 ORTHO05D004670 5.8e-11 72.8 92 44.6
Cpa.g.sc111.54 Carica papaya HOM05D004234 ORTHO05D004670 7.5e-11 72.4 160 33.1
Gohir.D11G243650 Gossypium hirsutum HOM05D001733 ORTHO05D004670 1.7e-10 71.2 51 64.7
FvH4_5g28373 Fragaria vesca HOM05D004234 ORTHO05D004670 4.9e-10 69.7 109 40.4
BolC1t03363H Brassica oleracea HOM05D004234 ORTHO05D004670 6.4e-10 69.3 66 54.5
Dinv16843 Davidia involucrata HOM05D004234 ORTHO05D004670 1.4e-09 68.2 37 81.1
SEGI_33806 Sequoiadendron giganteum HOM05D004234 ORTHO05D004670 2.4e-09 67.4 37 78.4
FvH4_3g27272 Fragaria vesca HOM05D004234 ORTHO05D004670 7.8e-08 62.4 82 43.9
Lsat_1_v5_gn_5_94641 Lactuca sativa HOM05D004234 ORTHO05D004670 1.5e-06 58.2 60 48.3


User provided reference genes

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