Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc06g034100.4 Solanum lycopersicum HOM05D005379 ORTHO05D006661 6.1e-160 567.4 280 100.0
Sopen06g010750 Solanum pennellii HOM05D005379 ORTHO05D006661 3.4e-158 561.6 280 98.9
CAN.G174.21 Capsicum annuum HOM05D005379 ORTHO05D006661 2.0e-126 456.1 242 91.7
Nitab4.5_0000448g0020 Nicotiana tabacum HOM05D005379 ORTHO05D006661 2.0e-118 429.5 241 85.9
Nitab4.5_0000262g0030 Nicotiana tabacum HOM05D005379 ORTHO05D006661 6.4e-117 424.5 245 84.5
Nitab4.5_0010756g0010 Nicotiana tabacum HOM05D005379 ORTHO05D006661 7.9e-115 417.5 280 75.0
Thecc.03G149400 Theobroma cacao HOM05D005379 ORTHO05D006661 4.3e-113 411.8 279 72.4
Gorai.001G050800 Gossypium raimondii HOM05D005379 ORTHO05D006661 3.7e-112 408.7 283 71.4
Gohir.A07G043200 Gossypium hirsutum HOM05D005379 ORTHO05D006661 1.4e-111 406.8 283 71.7
Nitab4.5_0002211g0080 Nicotiana tabacum HOM05D005379 ORTHO05D006661 5.3e-111 404.8 280 72.9
CSS0027857 Camellia sinensis var. sinensis HOM05D005379 ORTHO05D006661 1.5e-110 403.3 283 71.0
Eucgr.K00130 Eucalyptus grandis HOM05D005379 ORTHO05D006661 3.4e-110 402.1 285 70.2
Prupe.2G273100 Prunus persica HOM05D005379 ORTHO05D006661 5.8e-110 401.4 279 69.5
Actinidia31774 Actinidia chinensis HOM05D005379 ORTHO05D006661 1.0e-109 400.6 275 72.0
Cfa013572 Carpinus fangiana HOM05D005379 ORTHO05D006661 1.1e-108 397.1 275 70.2
GSVIVG01013977001 Vitis vinifera HOM05D005379 ORTHO05D006661 5.5e-108 394.8 283 67.1
MSTRG.8845 Avicennia marina HOM05D005379 ORTHO05D006661 9.3e-108 394.0 285 69.8
TAR375G0328 Trochodendron aralioides HOM05D005379 ORTHO05D006661 2.1e-107 392.9 277 69.7
Rhsim03G0161700 Rhododendron simsii HOM05D005379 ORTHO05D006661 2.7e-107 392.5 305 65.9
Ciclev10005581m.g Citrus clementina HOM05D005379 ORTHO05D006661 4.6e-107 391.7 279 70.3
MD01G1177600 Malus domestica HOM05D005379 ORTHO05D006661 4.6e-107 391.7 278 69.1
MD07G1249400 Malus domestica HOM05D005379 ORTHO05D006661 4.6e-107 391.7 279 68.1
TWI23G1062 Tripterygium wilfordii HOM05D005379 ORTHO05D006661 4.6e-107 391.7 283 69.6
QL09p028045 Quercus lobata HOM05D005379 ORTHO05D006661 7.9e-107 391.0 277 70.8
AUR62002241 Chenopodium quinoa HOM05D005379 ORTHO05D006661 1.3e-106 390.2 282 68.8
Lalb_Chr05g0217631 Lupinus albus HOM05D005379 ORTHO05D006661 3.9e-106 388.7 283 68.2
Dinv06588 Davidia involucrata HOM05D005379 ORTHO05D006661 5.1e-106 388.3 258 73.6
Migut.F00521 Erythranthe guttata HOM05D005379 ORTHO05D006661 1.3e-104 383.6 284 68.3
Manes.14G038300 Manihot esculenta HOM05D005379 ORTHO05D006661 3.7e-104 382.1 286 67.1
AUR62015453 Chenopodium quinoa HOM05D005379 ORTHO05D006661 4.8e-104 381.7 278 66.9
Potri.003G151600 Populus trichocarpa HOM05D005379 ORTHO05D006661 2.4e-103 379.4 282 68.1
FvH4_7g27000 Fragaria vesca HOM05D005379 ORTHO05D006661 3.1e-103 379.0 276 68.1
MBI04_g36330_MAGBIO Magnolia biondii HOM05D005379 ORTHO05D006661 3.1e-103 379.0 285 68.4
MBI04_g38758_MAGBIO Magnolia biondii HOM05D005379 ORTHO05D006661 1.5e-102 376.7 285 68.4
EL10Ac3g05878 Beta vulgaris HOM05D005379 ORTHO05D006661 2.0e-102 376.3 282 66.0
PGR004G0100 Punica granatum HOM05D005379 ORTHO05D006661 2.0e-102 376.3 284 69.4
Hund04565 Selenicereus undatus HOM05D005379 ORTHO05D006661 3.4e-102 375.6 282 67.4
CANSAT56G0595 Cannabis sativa HOM05D005379 ORTHO05D006661 5.8e-102 374.8 293 64.5
Hund11852 Selenicereus undatus HOM05D005379 ORTHO05D006661 1.0e-101 374.0 282 67.7
CsaV3_6G041840 Cucumis sativus L. HOM05D005379 ORTHO05D006661 1.3e-101 373.6 279 67.7
Lsat_1_v5_gn_8_9541 Lactuca sativa HOM05D005379 ORTHO05D006661 1.3e-101 373.6 279 66.3
CANSAT56G1299 Cannabis sativa HOM05D005379 ORTHO05D006661 1.7e-101 373.2 293 64.5
PSO063G0621 Papaver somniferum HOM05D005379 ORTHO05D006661 1.7e-101 373.2 283 68.6
MELO3C008037.2 Cucumis melo HOM05D005379 ORTHO05D006661 6.5e-101 371.3 279 66.7
Cc02_g04670 Coffea canephora HOM05D005379 ORTHO05D006661 2.5e-100 369.4 251 74.5
Glyma.15G056200 Glycine max HOM05D005379 ORTHO05D006661 2.5e-100 369.4 273 67.4
Sed0000219 Sechium edule HOM05D005379 ORTHO05D006661 3.2e-100 369.0 283 68.2
ClCG01G015600 Citrullus lanatus HOM05D005379 ORTHO05D006661 4.2e-100 368.6 279 66.3
Peaxi162Scf00304g01113 Petunia axillaris HOM05D005379 ORTHO05D006661 4.2e-100 368.6 224 81.2
Lj3g0027387 Lotus japonicus HOM05D005379 ORTHO05D006661 5.5e-100 368.2 272 66.2
Sc18g0007310 Simmondsia chinensis HOM05D005379 ORTHO05D006661 9.3e-100 367.5 280 64.6
Glyma.08G176800 Glycine max HOM05D005379 ORTHO05D006661 1.2e-99 367.1 274 67.2
THA.LOC104811535 Tarenaya hassleriana HOM05D005379 ORTHO05D006661 2.1e-99 366.3 282 64.5
VMungo0540G0153 Vigna mungo HOM05D005379 ORTHO05D006661 2.1e-99 366.3 271 66.1
Medtr2g009320 Medicago truncatula HOM05D005379 ORTHO05D006661 2.7e-99 365.9 273 66.3
Lj1A584T32 Lonicera japonica HOM05D005379 ORTHO05D006661 7.9e-99 364.4 251 73.7
Oeu042535.3 Olea europaea HOM05D005379 ORTHO05D006661 7.9e-99 364.4 223 78.0
CDE11G0172 Ceratophyllum demersum HOM05D005379 ORTHO05D006661 3.9e-98 362.1 277 63.9
Ca_00152_v3 Cicer arietinum L. HOM05D005379 ORTHO05D006661 6.7e-98 361.3 271 66.4
PSO782G5074 Papaver somniferum HOM05D005379 ORTHO05D006661 6.7e-98 361.3 313 62.6
CiPaw.08G041400 Carya illinoinensis HOM05D005379 ORTHO05D006661 8.7e-98 360.9 215 80.0
Phvul.006G202400 Phaseolus vulgaris HOM05D005379 ORTHO05D006661 1.5e-97 360.1 271 65.7
vmacro06833 Vaccinium macrocarpon HOM05D005379 ORTHO05D006661 4.3e-97 358.6 255 68.2
Ah.13g071160 Amaranthus hybridus HOM05D005379 ORTHO05D006661 9.7e-97 357.5 282 63.5
TAR374G0427 Trochodendron aralioides HOM05D005379 ORTHO05D006661 1.3e-96 357.1 263 66.5
SalBow5G2200 Salvia bowleyana HOM05D005379 ORTHO05D006661 2.8e-96 355.9 320 60.3
AT5G51220 Arabidopsis thaliana HOM05D005379 ORTHO05D006661 4.8e-96 355.1 276 63.0
Psat1g214640 Pisum sativum HOM05D005379 ORTHO05D006661 1.4e-95 353.6 250 69.2
SalBow7G1847 Salvia bowleyana HOM05D005379 ORTHO05D006661 1.4e-95 353.6 329 58.7
Carub.0008s1126 Capsella rubella HOM05D005379 ORTHO05D006661 4.1e-95 352.1 275 62.5
ATR0057G081 Amborella trichopoda HOM05D005379 ORTHO05D006661 5.3e-95 351.7 272 65.1
ECA233G0107 Erigeron canadensis HOM05D003586 ORTHO05D004036 6.9e-95 351.3 245 71.0
FAN06G0815 Fragaria x ananassa HOM05D005379 ORTHO05D006661 2.0e-94 349.7 270 65.2
CARHR256800 Cardamine hirsuta HOM05D005379 ORTHO05D006661 7.7e-94 347.8 277 62.5
Sp6g13420 Schrenkiella parvula HOM05D005379 ORTHO05D006661 2.9e-93 345.9 282 59.2
arahy.Tifrunner.gnm1.ann1.3L844V Arachis hypogaea HOM05D005379 ORTHO05D006661 5.0e-93 345.1 273 64.5
BcaB08g35480 Brassica carinata HOM05D005379 ORTHO05D006661 5.0e-93 345.1 282 59.6
RcHm_v2.0_Chr1g0373791 Rosa chinensis HOM05D005379 ORTHO05D006661 1.4e-92 343.6 252 67.5
Thhalv10014342m.g Eutrema salsugineum HOM05D005379 ORTHO05D006661 7.2e-92 341.3 272 62.1
HanXRQChr08g0222701 Helianthus annuus HOM05D005379 ORTHO05D006661 7.2e-92 341.3 219 73.5
BcaC04g20721 Brassica carinata HOM05D005379 ORTHO05D006661 2.1e-91 339.7 278 58.3
Os07g0490300 Oryza sativa ssp. japonica HOM05D005379 ORTHO05D006661 2.1e-91 339.7 277 61.7
SalBow7G3941 Salvia bowleyana HOM05D005379 ORTHO05D006661 3.6e-91 339.0 247 70.0
COL.COLO4_37344 Corchorus olitorius HOM05D003586 ORTHO05D004036 6.1e-91 338.2 224 72.8
ECA238G1883 Erigeron canadensis HOM05D005379 ORTHO05D006661 7.9e-91 337.8 283 60.1
HanXRQChr05g0139501 Helianthus annuus HOM05D005379 ORTHO05D006661 1.0e-90 337.4 220 73.2
SGA_v2.0_scaffold60G20811 Striga asiatica HOM05D005379 ORTHO05D006661 3.9e-90 335.5 315 57.8
Aa31LG3G7760 Aethionema arabicum HOM05D005379 ORTHO05D006661 8.8e-90 334.3 273 61.9
AL8G25500 Arabidopsis lyrata HOM05D005379 ORTHO05D006661 2.0e-89 333.2 215 73.0
HanXRQChr07g0205531 Helianthus annuus HOM05D005379 ORTHO05D006661 3.3e-89 332.4 226 70.8
arahy.Tifrunner.gnm1.ann1.8RST7H Arachis hypogaea HOM05D005379 ORTHO05D006661 4.3e-89 332.0 273 63.0
FAN10G0849 Fragaria x ananassa HOM05D005379 ORTHO05D006661 1.3e-88 330.5 248 67.3
Zm00001eb321690 Zea mays HOM05D005379 ORTHO05D006661 1.3e-88 330.5 225 69.8
FAN03G3283 Fragaria x ananassa HOM05D005379 ORTHO05D006661 1.8e-87 326.6 247 66.8
DCAR_018078 Daucus carota HOM05D005379 ORTHO05D006661 6.9e-87 324.7 278 59.4
Haze_22191 Corylus avellana HOM05D005379 ORTHO05D006661 3.4e-86 322.4 331 54.4
Sabra03G0109800 Salix brachista HOM05D005379 ORTHO05D006661 4.5e-86 322.0 221 71.9
Gohir.D07G047600 Gossypium hirsutum HOM05D005379 ORTHO05D006661 1.7e-85 320.1 190 82.6
HPP92_009947 Vanilla planifolia HOM05D005379 ORTHO05D006227 1.9e-84 316.6 267 59.6
Actinidia31671 Actinidia chinensis HOM05D005379 ORTHO05D006661 1.2e-83 313.9 278 62.6
Peaxi162Scf00167g00730 Petunia axillaris HOM05D005379 ORTHO05D006661 1.6e-83 313.5 169 88.8
Hma1.2p1_0456F.1_g156820 Hydrangea macrophylla HOM05D005379 ORTHO05D006661 1.4e-82 310.5 338 51.2
A10p07900 Brassica napus HOM05D005379 ORTHO05D006661 8.2e-80 301.2 241 58.9
BraSC35t46008Z Brassica rapa HOM05D005379 ORTHO05D006661 8.2e-80 301.2 241 58.9
C09p39890 Brassica napus HOM05D005379 ORTHO05D006661 2.4e-79 299.7 241 58.1
BolC9t56888H Brassica oleracea HOM05D005379 ORTHO05D006661 2.4e-79 299.7 241 58.1
Oeu022464.1 Olea europaea HOM05D005379 ORTHO05D006661 1.9e-76 290.0 166 84.9
Cpa.g.sc13.263 Carica papaya HOM05D005379 ORTHO05D006661 6.1e-75 285.0 219 64.8
Zm00001eb105230 Zea mays HOM05D005379 ORTHO05D006661 3.7e-72 275.8 186 72.0
TPR.G9516 Trifolium pratense HOM05D005379 ORTHO05D006661 3.8e-69 265.8 273 53.1
Manes.06G131601 Manihot esculenta HOM05D005379 ORTHO05D006661 2.7e-67 259.6 280 53.2
AagrBONN_evm.TU.Sc2ySwM_228.472 Anthoceros agrestis HOM05D005379 ORTHO05D006661 4.1e-63 245.7 209 54.5
Mapoly0029s0089 Marchantia polymorpha HOM05D005379 ORTHO05D006661 8.5e-61 238.0 219 50.7
Pp3c8_7310 Physcomitrium patens HOM05D005379 ORTHO05D006661 8.5e-61 238.0 208 52.9
FAN06G1013 Fragaria x ananassa HOM05D005379 ORTHO05D006661 5.7e-57 225.3 143 75.5
CANSAT56G1106 Cannabis sativa HOM05D005379 ORTHO05D006661 1.6e-54 217.2 140 76.4
BcaB05g24017 Brassica carinata HOM05D005379 ORTHO05D006661 3.5e-54 216.1 252 50.4
CBR_g48514 Chara braunii HOM05D005379 ORTHO05D006661 8.6e-53 211.5 265 40.8
unitig_0.g2509 Utricularia gibba HOM05D005379 ORTHO05D006661 6.8e-50 201.8 137 71.5
SMO361G0220 Selaginella moellendorffii HOM05D005379 ORTHO05D006661 1.1e-44 184.5 223 41.7
CANSAT56G1775 Cannabis sativa HOM05D005379 ORTHO05D006661 2.1e-43 180.3 105 80.0
Lalb_Chr16g0382791 Lupinus albus HOM05D005379 ORTHO05D006661 1.2e-41 174.5 150 60.0
Dinv06594 Davidia involucrata HOM05D005379 ORTHO05D006661 1.2e-33 147.9 133 57.1
MCO01G548 Micromonas commoda HOM05D005379 ORTHO05D006661 2.1e-27 127.1 179 35.8
A02p12440 Brassica napus HOM05D005379 ORTHO05D006661 5.2e-26 122.5 80 70.0
BraA02t06308Z Brassica rapa HOM05D005379 ORTHO05D006661 4.4e-25 119.4 80 67.5
Ah.13g066320 Amaranthus hybridus HOM05D005379 ORTHO05D006661 2.9e-24 116.7 127 54.3
BcaC03g14620 Brassica carinata HOM05D005379 ORTHO05D006661 4.9e-24 115.9 82 61.0
Cre01.g052050 Chlamydomonas reinhardtii HOM05D005379 ORTHO05D006661 4.6e-22 109.4 187 36.9
Lalb_Chr16g0382801 Lupinus albus HOM05D005379 ORTHO05D006661 2.3e-21 107.1 85 65.9
HPP92_009967 Vanilla planifolia HOM05D005379 ORTHO05D006661 7.3e-20 102.1 81 61.7
BolC2t08192H Brassica oleracea HOM05D005379 ORTHO05D006661 4.7e-19 99.4 70 62.9
Ah.13g066300 Amaranthus hybridus HOM05D005379 ORTHO05D006661 9.9e-17 91.7 117 47.0
Peaxi162Scf00304g01114 Petunia axillaris HOM05D005379 ORTHO05D006661 5.6e-12 75.9 41 90.2
SEGI_00850 Sequoiadendron giganteum HOM05D005379 ORTHO05D006661 6.2e-11 72.4 47 72.3
HPP92_009968 Vanilla planifolia HOM05D005379 ORTHO05D006661 1.8e-10 70.9 37 83.8
Lj1A976T72 Lonicera japonica HOM05D005379 ORTHO05D006661 1.9e-07 60.8 80 43.8
RcHm_v2.0_Chr1g0373801 Rosa chinensis HOM05D005379 ORTHO05D006661 4.2e-07 59.7 33 84.8
C02p20560 Brassica napus HOM05D005379 ORTHO05D006661 7.1e-07 58.9 39 64.1
CDE02G1103 Ceratophyllum demersum HOM05D005379 ORTHO05D006661 1.2e-06 58.2 53 56.6


User provided reference genes

Program Settings