Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc06g034025.1 Solanum lycopersicum HOM05D000399 ORTHO05D000304 4.0e-37 157.5 76 100.0
PGSC0003DMG400000676 Solanum tuberosum HOM05D000399 ORTHO05D000304 3.3e-15 84.7 44 88.6
Solyc07g049150.2 Solanum lycopersicum HOM05D000399 ORTHO05D000304 4.3e-15 84.3 44 88.6
Nitab4.5_0009416g0010 Nicotiana tabacum HOM05D000399 ORTHO05D000304 3.1e-13 78.2 44 81.8
Peaxi162Scf00921g00026 Petunia axillaris HOM05D000399 ORTHO05D000304 2.0e-12 75.5 44 77.3
Sopen05g025990 Solanum pennellii HOM05D000399 ORTHO05D000304 2.0e-12 75.5 44 77.3
Nitab4.5_0000482g0020 Nicotiana tabacum HOM05D000399 ORTHO05D000304 2.6e-12 75.1 44 77.3
PGSC0003DMG400020752 Solanum tuberosum HOM05D000399 ORTHO05D000304 2.6e-12 75.1 44 77.3
Solyc05g041920.3 Solanum lycopersicum HOM05D000399 ORTHO05D000304 5.8e-12 73.9 44 75.0
Nitab4.5_0005321g0010 Nicotiana tabacum HOM05D000399 ORTHO05D000304 1.3e-11 72.8 44 75.0
Peaxi162Scf00147g01712 Petunia axillaris HOM05D000399 ORTHO05D000304 1.7e-11 72.4 44 75.0
CAN.G834.3 Capsicum annuum HOM05D000399 ORTHO05D000304 2.9e-11 71.6 44 75.0
Nitab4.5_0000482g0010 Nicotiana tabacum HOM05D000399 ORTHO05D000304 2.4e-10 68.6 42 71.4
PGSC0003DMG400014598 Solanum tuberosum HOM05D000138 ORTHO05D000304 5.4e-10 67.4 41 75.6
Manes.13G068400 Manihot esculenta HOM05D000399 ORTHO05D000304 7.8e-09 63.5 44 59.1
Oeu021493.1 Olea europaea HOM05D000399 ORTHO05D000304 2.3e-08 62.0 44 65.9
Eucgr.K00771 Eucalyptus grandis HOM05D000399 ORTHO05D000304 3.0e-08 61.6 44 61.4
FAN08G0997 Fragaria x ananassa HOM05D000399 ORTHO05D000304 3.0e-08 61.6 41 63.4
Solyc05g024210.1 Solanum lycopersicum HOM05D000399 ORTHO05D000304 3.0e-08 61.6 39 71.8
HanXRQChr12g0373841 Helianthus annuus HOM05D000399 ORTHO05D000304 3.9e-08 61.2 44 63.6
Ciclev10016164m.g Citrus clementina HOM05D000399 ORTHO05D000304 5.1e-08 60.8 44 59.1
MSTRG.12282 Avicennia marina HOM05D000399 ORTHO05D000304 6.6e-08 60.5 41 65.9
Sabra02G0173300 Salix brachista HOM05D000399 ORTHO05D000304 6.6e-08 60.5 44 61.4
PGSC0003DMG400035922 Solanum tuberosum HOM05D000399 ORTHO05D000304 6.6e-08 60.5 39 69.2
SGA_v2.0_scaffold159G37572 Striga asiatica HOM05D000399 ORTHO05D000304 6.6e-08 60.5 44 63.6
CsaV3_7G003390 Cucumis sativus L. HOM05D000399 ORTHO05D000304 1.1e-07 59.7 42 66.7
Migut.H01231 Erythranthe guttata HOM05D000399 ORTHO05D000304 1.5e-07 59.3 44 61.4
Potri.002G226700 Populus trichocarpa HOM05D000399 ORTHO05D000304 1.5e-07 59.3 44 59.1
FAN13G2096 Fragaria x ananassa HOM05D000399 ORTHO05D000304 2.5e-07 58.5 41 58.5
QL08p031336 Quercus lobata HOM05D000399 ORTHO05D000304 2.5e-07 58.5 44 59.1
FvH4_5g08550 Fragaria vesca HOM05D000399 ORTHO05D000304 3.3e-07 58.2 41 58.5
FAN18G3343 Fragaria x ananassa HOM05D000399 ORTHO05D000304 3.3e-07 58.2 41 58.5
SalBow1G0456 Salvia bowleyana HOM05D000399 ORTHO05D000304 3.3e-07 58.2 40 62.5
ECA234G3970 Erigeron canadensis HOM05D000399 ORTHO05D000304 4.3e-07 57.8 44 61.4
CiPaw.11G011600 Carya illinoinensis HOM05D000399 ORTHO05D000304 5.6e-07 57.4 44 59.1
Migut.M01455 Erythranthe guttata HOM05D000399 ORTHO05D000304 5.6e-07 57.4 41 58.5
CANSAT64G0834 Cannabis sativa HOM05D000399 ORTHO05D000304 7.3e-07 57.0 41 61.0
Cpa.g.sc87.111 Carica papaya HOM05D000399 ORTHO05D000304 7.3e-07 57.0 41 61.0
HanXRQChr16g0506621 Helianthus annuus HOM05D000399 ORTHO05D000304 7.3e-07 57.0 44 54.5
Nn1g03433 Nelumbo nucifera HOM05D000399 ORTHO05D000304 7.3e-07 57.0 44 54.5
RcHm_v2.0_Chr7g0189841 Rosa chinensis HOM05D000399 ORTHO05D000304 7.3e-07 57.0 41 56.1
GSVIVG01030481001 Vitis vinifera HOM05D000399 ORTHO05D000304 7.3e-07 57.0 44 56.8
CSS0020529 Camellia sinensis var. sinensis HOM05D000399 ORTHO05D000304 9.6e-07 56.6 44 56.8
ECA236G0530 Erigeron canadensis HOM05D000399 ORTHO05D000304 9.6e-07 56.6 44 54.5
vmacro12180 Vaccinium macrocarpon HOM05D000399 ORTHO05D000304 9.6e-07 56.6 44 59.1
RcHm_v2.0_Chr2g0158531 Rosa chinensis HOM05D000399 ORTHO05D000304 1.2e-06 56.2 41 56.1
TAR624G0809 Trochodendron aralioides HOM05D006348 ORTHO05D008261 1.2e-06 56.2 44 54.5
Cc05_g03410 Coffea canephora HOM05D000399 ORTHO05D000304 1.6e-06 55.8 44 56.8
Medtr6g071535 Medicago truncatula HOM05D000399 ORTHO05D000304 1.6e-06 55.8 41 58.5
PSO541G5711 Papaver somniferum HOM05D000399 ORTHO05D000304 1.6e-06 55.8 44 54.5
PSO675G4047 Papaver somniferum HOM05D000399 ORTHO05D000304 1.6e-06 55.8 44 54.5
DCAR_012935 Daucus carota HOM05D000399 ORTHO05D000304 2.1e-06 55.5 41 61.0
FAN09G3465 Fragaria x ananassa HOM05D000399 ORTHO05D000304 2.1e-06 55.5 41 53.7
Oeu057780.1 Olea europaea HOM05D000399 ORTHO05D000304 2.1e-06 55.5 43 58.1
Sc21g0001200 Simmondsia chinensis HOM05D000399 ORTHO05D000304 2.1e-06 55.5 44 56.8
THA.LOC104820426 Tarenaya hassleriana HOM05D000399 ORTHO05D000304 2.1e-06 55.5 41 58.5
Migut.H01232 Erythranthe guttata HOM05D000399 ORTHO05D000304 2.8e-06 55.1 44 52.3
Medtr3g079860 Medicago truncatula HOM05D000399 ORTHO05D000304 2.8e-06 55.1 44 54.5
Medtr3g079980 Medicago truncatula HOM05D000399 ORTHO05D000304 2.8e-06 55.1 44 56.8
THA.LOC104810429 Tarenaya hassleriana HOM05D000399 ORTHO05D000304 2.8e-06 55.1 41 61.0
Lsat_1_v5_gn_5_123501 Lactuca sativa HOM05D000399 ORTHO05D000304 3.6e-06 54.7 44 56.8
Rhsim06G0165700 Rhododendron simsii HOM05D000399 ORTHO05D000304 3.6e-06 54.7 44 56.8
Cfa014335 Carpinus fangiana HOM05D000225 ORTHO05D001595 4.7e-06 54.3 44 54.5
ClCG02G002110 Citrullus lanatus HOM05D000399 ORTHO05D000304 4.7e-06 54.3 41 61.0
Atru.chr6.3232 Acer truncatum HOM05D000399 ORTHO05D000304 6.2e-06 53.9 44 54.5
Actinidia09734 Actinidia chinensis HOM05D000399 ORTHO05D000304 6.2e-06 53.9 44 54.5
COL.COLO4_21840 Corchorus olitorius HOM05D000399 ORTHO05D000304 6.2e-06 53.9 44 50.0
Dinv08739 Davidia involucrata HOM05D000399 ORTHO05D000304 6.2e-06 53.9 44 61.4
Duzib138G0147 Durio zibethinus HOM05D000399 ORTHO05D000304 6.2e-06 53.9 44 50.0
HanXRQChr16g0506601 Helianthus annuus HOM05D000399 ORTHO05D000304 6.2e-06 53.9 44 52.3
Hma1.2p1_0842F.1_g227040 Hydrangea macrophylla HOM05D000399 ORTHO05D000304 6.2e-06 53.9 44 59.1
Hma1.2p1_0842F.1_g227050 Hydrangea macrophylla HOM05D000399 ORTHO05D000304 6.2e-06 53.9 41 63.4
SalBow1G2750 Salvia bowleyana HOM05D000399 ORTHO05D000304 6.2e-06 53.9 44 52.3
MD09G1111700 Malus domestica HOM05D000399 ORTHO05D000304 8.1e-06 53.5 41 58.5
Medtr3g080010 Medicago truncatula HOM05D000399 ORTHO05D000304 8.1e-06 53.5 44 56.8


User provided reference genes

Program Settings