Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc06g033940.1 Solanum lycopersicum HOM05D000053 ORTHO05D000035 3.5e-45 184.5 87 100.0
PGSC0003DMG400001831 Solanum tuberosum HOM05D000053 ORTHO05D000035 1.6e-34 149.1 92 81.5
Sopen08g026260 Solanum pennellii HOM05D000053 ORTHO05D000035 4.4e-32 141.0 89 75.3
PGSC0003DMG400029572 Solanum tuberosum HOM05D000053 ORTHO05D000035 2.3e-28 128.6 92 69.6
PGSC0003DMG401001828 Solanum tuberosum HOM05D000053 ORTHO05D000035 7.3e-27 123.6 90 67.8
Solyc08g077740.1 Solanum lycopersicum HOM05D000053 ORTHO05D000035 4.7e-26 120.9 91 65.9
Solyc06g033920.1 Solanum lycopersicum HOM05D000053 ORTHO05D000035 1.5e-24 115.9 94 61.7
Sopen08g026250 Solanum pennellii HOM05D000053 ORTHO05D000035 2.4e-22 108.6 94 59.6
Sopen06g014090 Solanum pennellii HOM05D000053 ORTHO05D000035 9.2e-22 106.7 87 62.1
CAN.G572.27 Capsicum annuum HOM05D000053 ORTHO05D000035 3.9e-20 101.3 97 60.8
PGSC0003DMG400001829 Solanum tuberosum HOM05D000053 ORTHO05D000035 2.5e-19 98.6 94 55.3
Peaxi162Scf00084g00518 Petunia axillaris HOM05D000053 ORTHO05D025608 1.8e-17 92.4 91 57.1
Peaxi162Scf00209g00022 Petunia axillaris HOM05D000053 ORTHO05D000035 5.8e-16 87.4 95 53.7
Peaxi162Scf00715g00011 Petunia axillaris HOM05D000053 ORTHO05D000035 5.8e-16 87.4 95 53.7
Peaxi162Scf61735g00001 Petunia axillaris HOM05D000053 ORTHO05D000035 5.8e-16 87.4 95 53.7
Peaxi162Scf00084g00058 Petunia axillaris HOM05D000053 ORTHO05D000035 8.4e-15 83.6 94 48.9
Solyc12g100030.2 Solanum lycopersicum HOM05D000053 ORTHO05D000035 1.4e-09 66.2 81 42.0
Sopen12g034640 Solanum pennellii HOM05D000053 ORTHO05D000035 1.4e-09 66.2 81 42.0
PGSC0003DMG400004284 Solanum tuberosum HOM05D000053 ORTHO05D000035 3.1e-09 65.1 81 39.5
CAN.G575.11 Capsicum annuum HOM05D001165 ORTHO05D001347 6.9e-09 63.9 61 44.3
CAN.G575.10 Capsicum annuum HOM05D000053 ORTHO05D000035 9.0e-09 63.5 91 37.4
Lj5C391T3 Lonicera japonica HOM05D000053 ORTHO05D000035 9.0e-09 63.5 56 53.6
Solyc12g009780.1 Solanum lycopersicum HOM05D000053 ORTHO05D000035 1.5e-08 62.8 56 53.6
CAN.G520.28 Capsicum annuum HOM05D000053 ORTHO05D000035 2.0e-08 62.4 95 38.9
Solyc12g099950.3 Solanum lycopersicum HOM05D000053 ORTHO05D000035 2.6e-08 62.0 80 41.2
PGSC0003DMG401004726 Solanum tuberosum HOM05D000053 ORTHO05D000035 2.6e-08 62.0 79 40.5
CSS0003982 Camellia sinensis var. sinensis HOM05D000053 ORTHO05D000035 5.8e-08 60.8 58 44.8
CSS0018224 Camellia sinensis var. sinensis HOM05D000053 ORTHO05D000035 5.8e-08 60.8 58 44.8
CSS0019744 Camellia sinensis var. sinensis HOM05D000053 ORTHO05D000035 5.8e-08 60.8 85 38.8
CSS0039175 Camellia sinensis var. sinensis HOM05D000053 ORTHO05D000035 5.8e-08 60.8 85 38.8
TWI23G1137 Tripterygium wilfordii HOM05D000053 ORTHO05D000035 5.8e-08 60.8 61 50.8
CAN.G484.15 Capsicum annuum HOM05D000053 ORTHO05D000035 9.9e-08 60.1 96 37.5
Lj5P390T28 Lonicera japonica HOM05D000053 ORTHO05D000035 9.9e-08 60.1 61 47.5
Manes.03G091144 Manihot esculenta HOM05D000053 ORTHO05D000035 9.9e-08 60.1 88 35.2
PGSC0003DMG400015824 Solanum tuberosum HOM05D000053 ORTHO05D000035 9.9e-08 60.1 82 40.2
AUR62036409 Chenopodium quinoa HOM05D000053 ORTHO05D000035 1.3e-07 59.7 57 43.9
QL09p020679 Quercus lobata HOM05D000053 ORTHO05D000035 1.3e-07 59.7 60 50.0
CSS0046020 Camellia sinensis var. sinensis HOM05D000053 ORTHO05D000035 1.7e-07 59.3 85 37.6
Ciclev10014113m.g Citrus clementina HOM05D000053 ORTHO05D000035 1.7e-07 59.3 86 40.7
Ciclev10030623m.g Citrus clementina HOM05D000053 ORTHO05D000448 1.7e-07 59.3 75 41.3
DCAR_012084 Daucus carota HOM05D000053 ORTHO05D000035 1.7e-07 59.3 81 32.1
CSS0021584 Camellia sinensis var. sinensis HOM05D000053 ORTHO05D000035 2.2e-07 58.9 87 41.4
Medtr5g079980 Medicago truncatula HOM05D000053 ORTHO05D000035 2.2e-07 58.9 81 37.0
Medtr5g080000 Medicago truncatula HOM05D000053 ORTHO05D000035 2.2e-07 58.9 81 37.0
CAN.G484.19 Capsicum annuum HOM05D000053 ORTHO05D000035 2.9e-07 58.5 83 37.3
CiPaw.02G052900 Carya illinoinensis HOM05D000053 ORTHO05D000035 2.9e-07 58.5 83 41.0
COL.COLO4_25512 Corchorus olitorius HOM05D000053 ORTHO05D000035 2.9e-07 58.5 82 37.8
Peaxi162Scf00299g00016 Petunia axillaris HOM05D000053 ORTHO05D000035 2.9e-07 58.5 81 42.0
Sopen12g034630 Solanum pennellii HOM05D000053 ORTHO05D000035 2.9e-07 58.5 81 40.7
TWI23G0766 Tripterygium wilfordii HOM05D000053 ORTHO05D000035 2.9e-07 58.5 57 47.4
AUR62036446 Chenopodium quinoa HOM05D000053 ORTHO05D000035 3.8e-07 58.2 63 41.3
Eucgr.K00631 Eucalyptus grandis HOM05D000053 ORTHO05D000035 3.8e-07 58.2 57 47.4
FvH4_7g09970 Fragaria vesca HOM05D000053 ORTHO05D009451 3.8e-07 58.2 77 37.7
FAN06G2549 Fragaria x ananassa HOM05D000053 ORTHO05D000035 3.8e-07 58.2 77 37.7
Sopen12g007080 Solanum pennellii HOM05D000053 ORTHO05D000035 3.8e-07 58.2 61 45.9
CSS0002068 Camellia sinensis var. sinensis HOM05D000053 ORTHO05D000035 4.9e-07 57.8 87 41.4
Eucgr.K00636 Eucalyptus grandis HOM05D000053 ORTHO05D000035 4.9e-07 57.8 57 49.1
CSS0004663 Camellia sinensis var. sinensis HOM05D000053 ORTHO05D000035 6.4e-07 57.4 90 38.9
CAN.G274.25 Capsicum annuum HOM05D000053 ORTHO05D000035 6.4e-07 57.4 90 35.6
Eucgr.K00637 Eucalyptus grandis HOM05D000053 ORTHO05D000035 6.4e-07 57.4 57 49.1
FAN10G0606 Fragaria x ananassa HOM05D000053 ORTHO05D000035 6.4e-07 57.4 60 48.3
QL03p021244 Quercus lobata HOM05D000053 ORTHO05D000035 6.4e-07 57.4 61 49.2
PGSC0003DMG400004725 Solanum tuberosum HOM05D000053 ORTHO05D000035 6.4e-07 57.4 65 43.1
CSS0014658 Camellia sinensis var. sinensis HOM05D000053 ORTHO05D000035 8.4e-07 57.0 90 38.9
CAN.G1527.2 Capsicum annuum HOM05D000053 ORTHO05D000035 8.4e-07 57.0 57 47.4
CAN.G484.17 Capsicum annuum HOM05D000053 ORTHO05D000035 8.4e-07 57.0 89 39.3
CiPaw.02G111800 Carya illinoinensis HOM05D000053 ORTHO05D000035 8.4e-07 57.0 77 41.6
Ciclev10017911m.g Citrus clementina HOM05D000053 ORTHO05D000035 8.4e-07 57.0 57 45.6
Ciclev10018299m.g Citrus clementina HOM05D000053 ORTHO05D000035 8.4e-07 57.0 84 36.9
Ciclev10018328m.g Citrus clementina HOM05D000053 ORTHO05D000035 8.4e-07 57.0 63 46.0
COL.COLO4_25516 Corchorus olitorius HOM05D000053 ORTHO05D000035 8.4e-07 57.0 89 36.0
Eucgr.K00633 Eucalyptus grandis HOM05D000053 ORTHO05D000035 8.4e-07 57.0 57 47.4
Peaxi162Scf00086g00054 Petunia axillaris HOM05D000053 ORTHO05D000035 8.4e-07 57.0 87 39.1
RcHm_v2.0_Chr5g0083471 Rosa chinensis HOM05D000053 ORTHO05D000035 8.4e-07 57.0 57 45.6
PGSC0003DMG400015349 Solanum tuberosum HOM05D000053 ORTHO05D000035 8.4e-07 57.0 98 36.7
CSS0016185 Camellia sinensis var. sinensis HOM05D000053 ORTHO05D000035 1.1e-06 56.6 90 38.9
CSS0026838 Camellia sinensis var. sinensis HOM05D000053 ORTHO05D000035 1.1e-06 56.6 90 37.8
COL.COLO4_09792 Corchorus olitorius HOM05D000053 ORTHO05D000035 1.1e-06 56.6 88 38.6
Eucgr.K00641 Eucalyptus grandis HOM05D000053 ORTHO05D000035 1.1e-06 56.6 57 47.4
Eucgr.K00646 Eucalyptus grandis HOM05D000053 ORTHO05D000035 1.1e-06 56.6 57 49.1
Sopen08g021730 Solanum pennellii HOM05D000053 ORTHO05D000035 1.1e-06 56.6 94 34.0
CSS0006603 Camellia sinensis var. sinensis HOM05D000053 ORTHO05D000035 1.4e-06 56.2 60 48.3
CSS0039514 Camellia sinensis var. sinensis HOM05D000053 ORTHO05D000035 1.4e-06 56.2 60 48.3
CAN.G1002.25 Capsicum annuum HOM05D000053 ORTHO05D000035 1.4e-06 56.2 85 38.8
Potri.012G020895 Populus trichocarpa HOM05D000053 ORTHO05D000035 1.4e-06 56.2 86 38.4
PGSC0003DMG401006653 Solanum tuberosum HOM05D000053 ORTHO05D000035 1.4e-06 56.2 56 50.0
AUR62017092 Chenopodium quinoa HOM05D000053 ORTHO05D000035 1.9e-06 55.8 63 38.1
Lj5P318T53 Lonicera japonica HOM05D000053 ORTHO05D000035 1.9e-06 55.8 61 42.6
Potri.012G010300 Populus trichocarpa HOM05D000053 ORTHO05D000035 1.9e-06 55.8 81 37.0
TWI23G0540 Tripterygium wilfordii HOM05D000053 ORTHO05D000035 1.9e-06 55.8 61 47.5
TWI39G0592 Tripterygium wilfordii HOM05D000053 ORTHO05D000035 1.9e-06 55.8 72 40.3
arahy.Tifrunner.gnm1.ann1.22RVV0 Arachis hypogaea HOM05D000053 ORTHO05D000035 2.4e-06 55.5 59 44.1
arahy.Tifrunner.gnm1.ann1.Z30F3P Arachis hypogaea HOM05D002757 ORTHO05D003252 2.4e-06 55.5 54 46.3
Cc08_g11300 Coffea canephora HOM05D000053 ORTHO05D000035 2.4e-06 55.5 63 41.3
COL.COLO4_17551 Corchorus olitorius HOM05D000053 ORTHO05D000035 2.4e-06 55.5 57 43.9
DCAR_010964 Daucus carota HOM05D000053 ORTHO05D000448 2.4e-06 55.5 83 38.6
Duzib268G1127 Durio zibethinus HOM05D000053 ORTHO05D000035 2.4e-06 55.5 80 42.5
Eucgr.K00645 Eucalyptus grandis HOM05D000053 ORTHO05D000035 2.4e-06 55.5 57 49.1
FAN01G0459 Fragaria x ananassa HOM05D000053 ORTHO05D000035 2.4e-06 55.5 76 42.1
FAN10G1301 Fragaria x ananassa HOM05D000053 ORTHO05D000035 2.4e-06 55.5 64 43.8
MD01G1212300 Malus domestica HOM05D000071 ORTHO05D000029 2.4e-06 55.5 61 44.3
Peaxi162Scf00301g01115 Petunia axillaris HOM05D000053 ORTHO05D000035 2.4e-06 55.5 34 67.6
Potri.009G112061 Populus trichocarpa HOM05D000053 ORTHO05D000035 2.4e-06 55.5 75 42.7
QL10p019340 Quercus lobata HOM05D000053 ORTHO05D000035 2.4e-06 55.5 82 39.0
Aa31LG3G3630 Aethionema arabicum HOM05D000053 ORTHO05D000035 3.2e-06 55.1 58 48.3
Ca_06124_v3 Cicer arietinum L. HOM05D000053 ORTHO05D000035 3.2e-06 55.1 69 39.1
Duzib268G0770 Durio zibethinus HOM05D000053 ORTHO05D000035 3.2e-06 55.1 63 42.9
Eucgr.L03146 Eucalyptus grandis HOM05D000053 ORTHO05D000035 3.2e-06 55.1 52 50.0
Lj5C391T2 Lonicera japonica HOM05D000053 ORTHO05D000035 3.2e-06 55.1 61 42.6
Nitab4.5_0006164g0060 Nicotiana tabacum HOM05D000053 ORTHO05D000035 3.2e-06 55.1 86 34.9
QL02p100689 Quercus lobata HOM05D000053 ORTHO05D000035 3.2e-06 55.1 59 45.8
arahy.Tifrunner.gnm1.ann1.SMP66G Arachis hypogaea HOM05D000053 ORTHO05D000035 4.2e-06 54.7 86 39.5
CiPaw.04G193400 Carya illinoinensis HOM05D000053 ORTHO05D000035 4.2e-06 54.7 64 43.8
Eucgr.H03468 Eucalyptus grandis HOM05D000053 ORTHO05D000035 4.2e-06 54.7 57 42.1
Eucgr.K00644 Eucalyptus grandis HOM05D000053 ORTHO05D000035 4.2e-06 54.7 57 47.4
Glyma.09G145600 Glycine max HOM05D000053 ORTHO05D000035 4.2e-06 54.7 55 47.3
Lj5P389T14 Lonicera japonica HOM05D000053 ORTHO05D000035 4.2e-06 54.7 58 44.8
Peaxi162Scf00306g00043 Petunia axillaris HOM05D000053 ORTHO05D000035 4.2e-06 54.7 88 36.4
RcHm_v2.0_Chr4g0400791 Rosa chinensis HOM05D000071 ORTHO05D000029 4.2e-06 54.7 56 48.2
Sopen12g004670 Solanum pennellii HOM05D000053 ORTHO05D000035 4.2e-06 54.7 84 40.5
PGSC0003DMG400024439 Solanum tuberosum HOM05D000053 ORTHO05D000035 4.2e-06 54.7 81 39.5
PGSC0003DMG400026231 Solanum tuberosum HOM05D000053 ORTHO05D000035 4.2e-06 54.7 86 34.9
Thecc.05G198500 Theobroma cacao HOM05D000053 ORTHO05D000035 4.2e-06 54.7 90 36.7
TWI23G1208 Tripterygium wilfordii HOM05D000053 ORTHO05D000035 4.2e-06 54.7 60 48.3
GSVIVG01037158001 Vitis vinifera HOM05D000053 ORTHO05D000035 4.2e-06 54.7 87 35.6
arahy.Tifrunner.gnm1.ann1.T4Y6AK Arachis hypogaea HOM05D000053 ORTHO05D000035 5.4e-06 54.3 52 44.2
CAN.G257.38 Capsicum annuum HOM05D000053 ORTHO05D000035 5.4e-06 54.3 81 38.3
CAN.G257.39 Capsicum annuum HOM05D000053 ORTHO05D000035 5.4e-06 54.3 59 45.8
DCAR_012082 Daucus carota HOM05D000053 ORTHO05D000035 5.4e-06 54.3 52 42.3
FAN01G2105 Fragaria x ananassa HOM05D000053 ORTHO05D000035 5.4e-06 54.3 75 41.3
FAN10G1339 Fragaria x ananassa HOM05D000053 ORTHO05D000035 5.4e-06 54.3 64 43.8
Hma1.2p1_1189F.1_g265380 Hydrangea macrophylla HOM05D000053 ORTHO05D000035 5.4e-06 54.3 60 43.3
Nn2g15961 Nelumbo nucifera HOM05D000053 ORTHO05D000035 5.4e-06 54.3 81 34.6
Nitab4.5_0002932g0010 Nicotiana tabacum HOM05D000053 ORTHO05D000035 5.4e-06 54.3 58 39.7
Psat0s4150g0040 Pisum sativum HOM05D000053 ORTHO05D000035 5.4e-06 54.3 58 43.1
Potri.T125004 Populus trichocarpa HOM05D000053 ORTHO05D000035 5.4e-06 54.3 75 42.7
RcHm_v2.0_Chr1g0340351 Rosa chinensis HOM05D000053 ORTHO05D000035 5.4e-06 54.3 57 47.4
CAN.G575.7 Capsicum annuum HOM05D000053 ORTHO05D000035 7.1e-06 53.9 73 37.0
Ciclev10018097m.g Citrus clementina HOM05D000053 ORTHO05D000035 7.1e-06 53.9 60 48.3
COL.COLO4_17520 Corchorus olitorius HOM05D000053 ORTHO05D000035 7.1e-06 53.9 85 40.0
Eucgr.E01372 Eucalyptus grandis HOM05D000053 ORTHO05D000035 7.1e-06 53.9 56 42.9
FAN01G1263 Fragaria x ananassa HOM05D000053 ORTHO05D000035 7.1e-06 53.9 93 34.4
FAN06G3488 Fragaria x ananassa HOM05D000053 ORTHO05D000035 7.1e-06 53.9 82 35.4
Hma1.2p1_1223F.1_g268360 Hydrangea macrophylla HOM05D000053 ORTHO05D000035 7.1e-06 53.9 93 34.4
Hma1.2p1_1532F.1_g289310 Hydrangea macrophylla HOM05D000053 ORTHO05D000035 7.1e-06 53.9 57 42.1
Sc03g0011200 Simmondsia chinensis HOM05D000053 ORTHO05D000035 7.1e-06 53.9 59 42.4
Solyc01g009690.3 Solanum lycopersicum HOM05D000053 ORTHO05D000035 7.1e-06 53.9 64 43.8
arahy.Tifrunner.gnm1.ann1.4QR5UJ Arachis hypogaea HOM05D000053 ORTHO05D000035 9.3e-06 53.5 84 36.9
CAN.G282.22 Capsicum annuum HOM05D000053 ORTHO05D000035 9.3e-06 53.5 80 35.0
Cc08_g11280 Coffea canephora HOM05D000053 ORTHO05D000035 9.3e-06 53.5 63 38.1
Haze_11386 Corylus avellana HOM05D000053 ORTHO05D000035 9.3e-06 53.5 80 40.0
Eucgr.F02779 Eucalyptus grandis HOM05D000053 ORTHO05D000035 9.3e-06 53.5 59 45.8
Eucgr.F02785 Eucalyptus grandis HOM05D000053 ORTHO05D000035 9.3e-06 53.5 59 45.8
FAN01G2259 Fragaria x ananassa HOM05D000053 ORTHO05D000035 9.3e-06 53.5 75 40.0
Gohir.D01G042100 Gossypium hirsutum HOM05D000053 ORTHO05D000035 9.3e-06 53.5 79 34.2
Gorai.002G052800 Gossypium raimondii HOM05D000053 ORTHO05D000035 9.3e-06 53.5 79 34.2
Hma1.2p1_1223F.1_g268380 Hydrangea macrophylla HOM05D000053 ORTHO05D000035 9.3e-06 53.5 60 43.3
Hma1.2p1_1656F.1_g296020 Hydrangea macrophylla HOM05D000053 ORTHO05D000035 9.3e-06 53.5 60 43.3
Hma1.2p1_2053F.1_g312690 Hydrangea macrophylla HOM05D000053 ORTHO05D000035 9.3e-06 53.5 57 42.1
Hma1.2p1_2122F.1_g314500 Hydrangea macrophylla HOM05D000053 ORTHO05D000035 9.3e-06 53.5 60 43.3
Nn2g10927 Nelumbo nucifera HOM05D000053 ORTHO05D000448 9.3e-06 53.5 74 43.2
Prupe.4G279000 Prunus persica HOM05D000053 ORTHO05D000035 9.3e-06 53.5 53 43.4
QL02p099694 Quercus lobata HOM05D000053 ORTHO05D000035 9.3e-06 53.5 75 37.3
QL04p065651 Quercus lobata HOM05D000053 ORTHO05D000035 9.3e-06 53.5 89 37.1
QL09p047793 Quercus lobata HOM05D000053 ORTHO05D000035 9.3e-06 53.5 58 44.8
QL11p025506 Quercus lobata HOM05D000053 ORTHO05D000035 9.3e-06 53.5 58 44.8
RcHm_v2.0_Chr1g0340631 Rosa chinensis HOM05D000053 ORTHO05D000035 9.3e-06 53.5 76 39.5
Solyc07g005150.3 Solanum lycopersicum HOM05D000053 ORTHO05D000035 9.3e-06 53.5 62 43.5
Solyc12g100020.1 Solanum lycopersicum HOM05D000053 ORTHO05D000035 9.3e-06 53.5 81 39.5


User provided reference genes

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