Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc06g030540.4 Solanum lycopersicum HOM05D006281 ORTHO05D005138 5.1e-41 170.6 86 100.0
Sopen06g008590 Solanum pennellii HOM05D006281 ORTHO05D005138 1.3e-36 156.0 78 98.7
CAN.G372.4 Capsicum annuum HOM05D006281 ORTHO05D005138 9.7e-32 139.8 84 85.7
Nitab4.5_0005628g0040 Nicotiana tabacum HOM05D006281 ORTHO05D005138 6.1e-26 120.6 83 72.3
Nitab4.5_0000802g0100 Nicotiana tabacum HOM05D006281 ORTHO05D005138 8.0e-26 120.2 75 78.7
Peaxi162Scf01313g00024 Petunia axillaris HOM05D006281 ORTHO05D005138 1.5e-24 115.9 76 77.6
Nitab4.5_0000802g0120 Nicotiana tabacum HOM05D006281 ORTHO05D005138 7.5e-24 113.6 83 69.9
Nitab4.5_0005628g0030 Nicotiana tabacum HOM05D006281 ORTHO05D005138 2.8e-23 111.7 86 66.3
Oeu025174.1 Olea europaea HOM05D006281 ORTHO05D005138 1.7e-20 102.4 76 65.8
Peaxi162Scf01313g00025 Petunia axillaris HOM05D006281 ORTHO05D005138 8.5e-20 100.1 62 77.4
Actinidia29689 Actinidia chinensis HOM05D006949 ORTHO05D008621 8.8e-17 90.1 82 57.3
Actinidia33937 Actinidia chinensis HOM05D006281 ORTHO05D005138 2.6e-16 88.6 82 58.5
Migut.F00696 Erythranthe guttata HOM05D006281 ORTHO05D005138 2.6e-16 88.6 75 64.0
Prupe.2G247900 Prunus persica HOM05D006281 ORTHO05D005138 2.4e-14 82.0 75 61.3
SalBow3G2112 Salvia bowleyana HOM05D006281 ORTHO05D005138 4.1e-14 81.3 73 54.8
Cc02_g06750 Coffea canephora HOM05D006281 ORTHO05D005138 9.1e-14 80.1 99 48.5
LjContig00357g0022557 Lotus japonicus HOM05D006281 ORTHO05D005138 2.7e-13 78.6 78 51.3
Glyma.20G229400 Glycine max HOM05D006281 ORTHO05D005138 3.5e-13 78.2 70 55.7
Glyma.10G159300 Glycine max HOM05D006281 ORTHO05D005138 4.5e-13 77.8 70 54.3
Manes.07G127600 Manihot esculenta HOM05D006281 ORTHO05D005138 4.5e-13 77.8 73 50.7
vmacro06983 Vaccinium macrocarpon HOM05D006281 ORTHO05D005138 4.5e-13 77.8 73 56.2
arahy.Tifrunner.gnm1.ann1.WVY9VA Arachis hypogaea HOM05D006281 ORTHO05D005138 5.9e-13 77.4 80 55.0
arahy.Tifrunner.gnm1.ann1.Y6I58B Arachis hypogaea HOM05D006281 ORTHO05D005138 7.7e-13 77.0 80 55.0
Duzib114G0722 Durio zibethinus HOM05D006949 ORTHO05D008621 1.0e-12 76.6 79 45.6
THA.LOC104824311 Tarenaya hassleriana HOM05D006281 ORTHO05D005138 1.0e-12 76.6 70 55.7
arahy.Tifrunner.gnm1.ann1.0XLH38 Arachis hypogaea HOM05D006281 ORTHO05D005138 1.3e-12 76.3 68 54.4
arahy.Tifrunner.gnm1.ann1.ZTR0B0 Arachis hypogaea HOM05D006281 ORTHO05D005138 1.3e-12 76.3 68 54.4
ECA238G3711 Erigeron canadensis HOM05D006281 ORTHO05D005138 1.7e-12 75.9 78 51.3
Sc07g0006300 Simmondsia chinensis HOM05D006281 ORTHO05D005138 2.3e-12 75.5 69 53.6
Medtr1g081780 Medicago truncatula HOM05D006281 ORTHO05D005138 2.9e-12 75.1 69 55.1
Thecc.10G022800 Theobroma cacao HOM05D006281 ORTHO05D005138 2.9e-12 75.1 84 51.2
Dinv34408 Davidia involucrata HOM05D006281 ORTHO05D005138 5.0e-12 74.3 96 47.9
Manes.10G015100 Manihot esculenta HOM05D006281 ORTHO05D005138 6.6e-12 73.9 73 46.6
Ca_10064_v3 Cicer arietinum L. HOM05D006281 ORTHO05D005138 8.6e-12 73.6 72 52.8
Lsat_1_v5_gn_2_121281 Lactuca sativa HOM05D006281 ORTHO05D005138 8.6e-12 73.6 74 52.7
Manes.10G014800 Manihot esculenta HOM05D006281 ORTHO05D005138 8.6e-12 73.6 73 47.9
Medtr1g111690 Medicago truncatula HOM05D006281 ORTHO05D005138 1.1e-11 73.2 78 48.7
Nn2g11433 Nelumbo nucifera HOM05D006281 ORTHO05D005138 1.1e-11 73.2 69 55.1
Potri.010G190800 Populus trichocarpa HOM05D006281 ORTHO05D005138 1.1e-11 73.2 75 50.7
TAR633G0389 Trochodendron aralioides HOM05D006281 ORTHO05D005138 1.1e-11 73.2 69 58.0
Lj5g0025792 Lotus japonicus HOM05D006281 ORTHO05D005138 1.5e-11 72.8 77 51.9
Medtr1g111700 Medicago truncatula HOM05D006281 ORTHO05D005138 1.5e-11 72.8 73 50.7
MD17G1067400 Malus domestica HOM05D006281 ORTHO05D005138 1.9e-11 72.4 72 55.6
TPR.G2715 Trifolium pratense HOM05D006281 ORTHO05D005138 1.9e-11 72.4 74 50.0
CANSAT56G0859 Cannabis sativa HOM05D006281 ORTHO05D005138 2.5e-11 72.0 84 46.4
Haze_18961 Corylus avellana HOM05D006281 ORTHO05D005138 2.5e-11 72.0 69 50.7
RcHm_v2.0_Chr6g0274431 Rosa chinensis HOM05D006281 ORTHO05D005138 2.5e-11 72.0 73 50.7
VMungo0720G2983 Vigna mungo HOM05D006281 ORTHO05D005138 2.5e-11 72.0 68 52.9
FAN15G2203 Fragaria x ananassa HOM05D006281 ORTHO05D005138 3.3e-11 71.6 72 50.0
TPR.G19854 Trifolium pratense HOM05D006281 ORTHO05D005138 3.3e-11 71.6 74 50.0
FvH4_7g24210 Fragaria vesca HOM05D006281 ORTHO05D005138 5.5e-11 70.9 72 47.2
Lalb_Chr10g0105101 Lupinus albus HOM05D006281 ORTHO05D005138 5.5e-11 70.9 75 52.0
Medtr5g082250 Medicago truncatula HOM05D006281 ORTHO05D005138 5.5e-11 70.9 88 45.5
CANSAT56G1147 Cannabis sativa HOM05D006281 ORTHO05D005138 7.2e-11 70.5 84 45.2
ClCG11G006260 Citrullus lanatus HOM05D006281 ORTHO05D005138 7.2e-11 70.5 73 52.1
CsaV3_6G001730 Cucumis sativus L. HOM05D006281 ORTHO05D005138 7.2e-11 70.5 88 47.7
FAN06G1003 Fragaria x ananassa HOM05D006281 ORTHO05D005138 7.2e-11 70.5 88 40.9
Phvul.008G225200 Phaseolus vulgaris HOM05D006281 ORTHO05D005138 7.2e-11 70.5 74 54.1
Manes.10G014600 Manihot esculenta HOM05D006281 ORTHO05D005138 9.5e-11 70.1 72 50.0
QL11p005716 Quercus lobata HOM05D021521 ORTHO05D005138 9.5e-11 70.1 62 51.6
Glyma.02G255900 Glycine max HOM05D006281 ORTHO05D005138 1.2e-10 69.7 78 47.4
Lalb_Chr02g0148591 Lupinus albus HOM05D006281 ORTHO05D005138 1.2e-10 69.7 76 47.4
BolC4t22363H Brassica oleracea HOM05D001301 ORTHO05D001169 1.6e-10 69.3 81 44.4
Medtr6g033440 Medicago truncatula HOM05D006281 ORTHO05D005138 1.6e-10 69.3 73 49.3
PGR142G2831 Punica granatum HOM05D006281 ORTHO05D005138 1.6e-10 69.3 65 55.4
QL05p066700 Quercus lobata HOM05D006281 ORTHO05D005138 2.1e-10 68.9 73 52.1
Aqoxy3G02946 Aquilegia oxysepala HOM05D006281 ORTHO05D005138 2.8e-10 68.6 69 53.6
FvH4_2g13151 Fragaria vesca HOM05D006281 ORTHO05D005138 2.8e-10 68.6 72 48.6
FAN01G2469 Fragaria x ananassa HOM05D006281 ORTHO05D005138 2.8e-10 68.6 78 43.6
FAN10G2794 Fragaria x ananassa HOM05D006949 ORTHO05D008621 2.8e-10 68.6 72 45.8
FAN20G0701 Fragaria x ananassa HOM05D006281 ORTHO05D005138 2.8e-10 68.6 72 48.6
C04p07420 Brassica napus HOM05D001301 ORTHO05D001169 3.6e-10 68.2 81 44.4
FAN03G1065 Fragaria x ananassa HOM05D006281 ORTHO05D005138 4.7e-10 67.8 72 45.8
Nitab4.5_0005628g0020 Nicotiana tabacum HOM05D006281 ORTHO05D005138 4.7e-10 67.8 83 49.4
Psat0s288g0040 Pisum sativum HOM05D006281 ORTHO05D005138 4.7e-10 67.8 68 50.0
BcaB02g09060 Brassica carinata HOM05D010943 ORTHO05D005138 6.1e-10 67.4 81 43.2
MBI14_g22157_MAGBIO Magnolia biondii HOM05D006281 ORTHO05D005138 6.1e-10 67.4 69 50.7
Psat6g147880 Pisum sativum HOM05D006281 ORTHO05D005138 6.1e-10 67.4 71 46.5
TWI53G0395 Tripterygium wilfordii HOM05D006281 ORTHO05D005138 6.1e-10 67.4 75 46.7
Ciclev10033546m.g Citrus clementina HOM05D006281 ORTHO05D005138 8.0e-10 67.0 64 53.1
Gohir.A10G234000 Gossypium hirsutum HOM05D006281 ORTHO05D005138 8.0e-10 67.0 86 45.3
MD01G1149600 Malus domestica HOM05D006281 ORTHO05D005138 8.0e-10 67.0 75 49.3
QL05p072246 Quercus lobata HOM05D021521 ORTHO05D005138 8.0e-10 67.0 62 46.8
ATR0618G177 Amborella trichopoda HOM05D006281 ORTHO05D005138 1.0e-09 66.6 65 50.8
Nitab4.5_0000802g0130 Nicotiana tabacum HOM05D006281 ORTHO05D005138 1.0e-09 66.6 63 55.6
AUR62043156 Chenopodium quinoa HOM05D006281 ORTHO05D005138 1.4e-09 66.2 79 51.9
Dinv20972 Davidia involucrata HOM05D000895 ORTHO05D002393 1.8e-09 65.9 57 54.4
Dinv21033 Davidia involucrata HOM05D000895 ORTHO05D002393 1.8e-09 65.9 57 54.4
PSO339G3794 Papaver somniferum HOM05D006281 ORTHO05D005138 1.8e-09 65.9 64 50.0
SalBow6G7137 Salvia bowleyana HOM05D006281 ORTHO05D005138 1.8e-09 65.9 71 54.9
TAR623G1110 Trochodendron aralioides HOM05D000895 ORTHO05D005138 1.8e-09 65.9 56 55.4
BraA05t19609Z Brassica rapa HOM05D001301 ORTHO05D001169 2.3e-09 65.5 81 43.2
Lsat_1_v5_gn_8_31300 Lactuca sativa HOM05D006281 ORTHO05D005138 2.3e-09 65.5 61 52.5
PSO384G4516 Papaver somniferum HOM05D006281 ORTHO05D005138 2.3e-09 65.5 64 50.0
MSTRG.8320 Avicennia marina HOM05D006281 ORTHO05D005138 3.0e-09 65.1 69 53.6
Ca_05949_v3 Cicer arietinum L. HOM05D006281 ORTHO05D005138 3.0e-09 65.1 57 56.1
COL.COLO4_25628 Corchorus olitorius HOM05D006281 ORTHO05D005138 3.0e-09 65.1 77 42.9
MELO3C029900.2 Cucumis melo HOM05D006281 ORTHO05D005138 3.0e-09 65.1 55 56.4
VMungo0647G1369 Vigna mungo HOM05D006949 ORTHO05D008621 3.0e-09 65.1 58 53.4
Cc02_g06760 Coffea canephora HOM05D006281 ORTHO05D005138 4.0e-09 64.7 67 55.2
DCAR_027547 Daucus carota HOM05D000021 ORTHO05D035016 4.0e-09 64.7 65 44.6
PGR142G2970 Punica granatum HOM05D006281 ORTHO05D005138 4.0e-09 64.7 70 51.4
Phvul.007G184700 Phaseolus vulgaris HOM05D006281 ORTHO05D005138 5.2e-09 64.3 67 49.3
Sed0005546 Sechium edule HOM05D006281 ORTHO05D005138 5.2e-09 64.3 65 53.8
BcaB01g03596 Brassica carinata HOM05D010943 ORTHO05D005138 8.9e-09 63.5 72 44.4
Gorai.011G284000 Gossypium raimondii HOM05D006281 ORTHO05D005138 8.9e-09 63.5 86 44.2
QL08p063014 Quercus lobata HOM05D006281 ORTHO05D005138 1.2e-08 63.2 72 45.8
Sp4g22330 Schrenkiella parvula HOM05D010943 ORTHO05D005138 1.5e-08 62.8 79 45.6
HanXRQChr12g0367471 Helianthus annuus HOM05D006281 ORTHO05D005138 2.0e-08 62.4 69 52.2
DCAR_024837 Daucus carota HOM05D006281 ORTHO05D005138 2.6e-08 62.0 64 54.7
AL1G53000 Arabidopsis lyrata HOM05D010943 ORTHO05D005138 3.4e-08 61.6 64 48.4
DCAR_027546 Daucus carota HOM05D000021 ORTHO05D035016 3.4e-08 61.6 61 44.3
Cfa001348 Carpinus fangiana HOM05D006281 ORTHO05D005138 4.4e-08 61.2 79 46.8
AUR62040493 Chenopodium quinoa HOM05D006281 ORTHO05D005138 4.4e-08 61.2 61 54.1
Haze_17206 Corylus avellana HOM05D006281 ORTHO05D005138 4.4e-08 61.2 78 46.2
EL10Ac7g16532 Beta vulgaris HOM05D006281 ORTHO05D005138 5.7e-08 60.8 68 50.0
A03p22480 Brassica napus HOM05D010943 ORTHO05D005138 5.7e-08 60.8 74 44.6
BolC3t15048H Brassica oleracea HOM05D010943 ORTHO05D005138 5.7e-08 60.8 79 41.8
Thhalv10017194m.g Eutrema salsugineum HOM05D010943 ORTHO05D005138 5.7e-08 60.8 73 45.2
Aa31LG5G19580 Aethionema arabicum HOM05D010943 ORTHO05D005138 7.5e-08 60.5 69 44.9
BcaC01g05445 Brassica carinata HOM05D010943 ORTHO05D005138 7.5e-08 60.5 79 40.5
C03p26630 Brassica napus HOM05D010943 ORTHO05D005138 7.5e-08 60.5 79 40.5
Glyma.06G220600 Glycine max HOM05D006281 ORTHO05D005138 9.8e-08 60.1 52 53.8
Glyma.18G211600 Glycine max HOM05D006281 ORTHO05D005138 9.8e-08 60.1 66 47.0
ECA233G1951 Erigeron canadensis HOM05D006281 ORTHO05D005138 1.3e-07 59.7 75 46.7
RcHm_v2.0_Chr1g0369781 Rosa chinensis HOM05D006281 ORTHO05D005138 1.3e-07 59.7 77 46.8
CiPaw.16G099300 Carya illinoinensis HOM05D006281 ORTHO05D005138 1.7e-07 59.3 73 43.8
PSO339G5625 Papaver somniferum HOM05D006281 ORTHO05D005138 1.7e-07 59.3 65 46.2
Hund20200 Selenicereus undatus HOM05D006281 ORTHO05D005138 1.7e-07 59.3 70 51.4
HanXRQChr07g0202561 Helianthus annuus HOM05D006281 ORTHO05D005138 2.2e-07 58.9 67 50.7
PSO013G0071 Papaver somniferum HOM05D002788 ORTHO05D005138 2.8e-07 58.5 76 43.4
PSO832G0699 Papaver somniferum HOM05D002788 ORTHO05D005138 2.8e-07 58.5 76 43.4
Actinidia13926 Actinidia chinensis HOM05D006281 ORTHO05D005138 3.7e-07 58.2 55 49.1
Gohir.D10G246300 Gossypium hirsutum HOM05D006281 ORTHO05D005138 4.9e-07 57.8 77 42.9
PSO384G0199 Papaver somniferum HOM05D006281 ORTHO05D005138 4.9e-07 57.8 64 45.3
CiPaw.16G099400 Carya illinoinensis HOM05D006281 ORTHO05D005138 1.1e-06 56.6 53 49.1
A05p06410 Brassica napus HOM05D001301 ORTHO05D001169 1.4e-06 56.2 70 40.0
Os09g0114700 Oryza sativa ssp. japonica HOM05D006281 ORTHO05D005138 1.4e-06 56.2 67 44.8
Zm00001eb050100 Zea mays HOM05D006281 ORTHO05D005138 1.8e-06 55.8 69 36.2
Atru.chr12.10 Acer truncatum HOM05D006281 ORTHO05D005138 2.4e-06 55.5 65 43.1
BcaC03g15045 Brassica carinata HOM05D010943 ORTHO05D005138 3.1e-06 55.1 60 43.3
COL.COLO4_25627 Corchorus olitorius HOM05D006949 ORTHO05D008621 3.1e-06 55.1 76 43.4
BraA03t11475Z Brassica rapa HOM05D010943 ORTHO05D005138 5.4e-06 54.3 66 40.9
Carub.0001s3571 Capsella rubella HOM05D010943 ORTHO05D005138 7.0e-06 53.9 79 38.0
Carub.0004s2218 Capsella rubella HOM05D010943 ORTHO05D005138 7.0e-06 53.9 69 43.5
Peaxi162Scf01313g00029 Petunia axillaris HOM05D000895 ORTHO05D000883 9.2e-06 53.5 76 44.7


User provided reference genes

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