Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc06g011630.1 Solanum lycopersicum HOM05D005662 ORTHO05D007004 2.0e-25 118.2 56 100.0
Solyc03g083540.3 Solanum lycopersicum HOM05D005662 ORTHO05D007004 2.6e-25 117.9 55 100.0
PGSC0003DMG400023012 Solanum tuberosum HOM05D005662 ORTHO05D007004 1.7e-24 115.2 55 96.4
Sopen03g023350 Solanum pennellii HOM05D005662 ORTHO05D007004 2.2e-24 114.8 55 98.2
Nitab4.5_0000072g0480 Nicotiana tabacum HOM05D005662 ORTHO05D007004 2.9e-21 104.4 55 87.3
Nitab4.5_0000481g0050 Nicotiana tabacum HOM05D005662 ORTHO05D007004 2.5e-20 101.3 55 85.5
Peaxi162Scf01372g00048 Petunia axillaris HOM05D005662 ORTHO05D007004 2.5e-20 101.3 55 85.5
MSTRG.8809 Avicennia marina HOM05D005662 ORTHO05D007004 5.2e-18 93.6 54 75.9
Cc02_g04010 Coffea canephora HOM05D005662 ORTHO05D007004 4.4e-17 90.5 54 72.2
Dinv22971 Davidia involucrata HOM05D005662 ORTHO05D007004 5.8e-17 90.1 53 71.7
Dinv28543 Davidia involucrata HOM05D005662 ORTHO05D007004 1.7e-16 88.6 53 73.6
Oeu039209.1 Olea europaea HOM05D005662 ORTHO05D007004 2.2e-16 88.2 54 68.5
TAR374G0299 Trochodendron aralioides HOM05D005662 ORTHO05D007004 6.4e-16 86.7 53 71.7
EL10Ac3g05805 Beta vulgaris HOM05D005662 ORTHO05D007004 8.3e-16 86.3 53 73.6
Actinidia25029 Actinidia chinensis HOM05D005662 ORTHO05D007004 1.1e-15 85.9 53 67.9
Nn4g26371 Nelumbo nucifera HOM05D005662 ORTHO05D007004 1.1e-15 85.9 53 73.6
PGR142G0586 Punica granatum HOM05D005662 ORTHO05D007004 1.1e-15 85.9 53 69.8
Cpa.g.sc130.1 Carica papaya HOM05D005662 ORTHO05D007004 1.4e-15 85.5 52 73.1
Actinidia13561 Actinidia chinensis HOM05D005662 ORTHO05D007004 3.2e-15 84.3 53 69.8
CSS0015308 Camellia sinensis var. sinensis HOM05D005662 ORTHO05D007004 3.2e-15 84.3 55 65.5
Ciclev10005797m.g Citrus clementina HOM05D005662 ORTHO05D007004 3.2e-15 84.3 53 69.8
MBI12_g31644_MAGBIO Magnolia biondii HOM05D005662 ORTHO05D007004 3.2e-15 84.3 53 69.8
TAR375G0912 Trochodendron aralioides HOM05D005662 ORTHO05D007004 3.2e-15 84.3 53 69.8
Eucgr.K00149 Eucalyptus grandis HOM05D005662 ORTHO05D007004 4.1e-15 84.0 52 71.2
PSO063G7367 Papaver somniferum HOM05D005662 ORTHO05D007004 4.1e-15 84.0 53 67.9
PSO478G4436 Papaver somniferum HOM05D005662 ORTHO05D007004 4.1e-15 84.0 53 67.9
PSO782G3258 Papaver somniferum HOM05D005662 ORTHO05D007004 4.1e-15 84.0 53 67.9
GSVIVG01018540001 Vitis vinifera HOM05D005662 ORTHO05D007004 4.1e-15 84.0 53 69.8
CANSAT56G2670 Cannabis sativa HOM05D005662 ORTHO05D007004 5.4e-15 83.6 53 66.0
Carub.0008s2298 Capsella rubella HOM05D005662 ORTHO05D007004 5.4e-15 83.6 55 67.3
COL.COLO4_14166 Corchorus olitorius HOM05D005662 ORTHO05D007004 7.0e-15 83.2 53 67.9
CARHR276070 Cardamine hirsuta HOM05D005662 ORTHO05D007004 9.2e-15 82.8 55 65.5
Hma1.2p1_0654F.1_g196460 Hydrangea macrophylla HOM05D005662 ORTHO05D007004 9.2e-15 82.8 53 67.9
Migut.F00442 Erythranthe guttata HOM05D005662 ORTHO05D007004 2.7e-14 81.3 54 66.7
SalBow4G2223 Salvia bowleyana HOM05D005662 ORTHO05D007004 3.5e-14 80.9 56 66.1
SalBow4G3324 Salvia bowleyana HOM05D005662 ORTHO05D007004 3.5e-14 80.9 56 66.1
SGA_v2.0_scaffold2G01165 Striga asiatica HOM05D005662 ORTHO05D007004 3.5e-14 80.9 56 69.6
AUR62016115 Chenopodium quinoa HOM05D005662 ORTHO05D007004 4.6e-14 80.5 53 66.0
QL09p018886 Quercus lobata HOM05D005662 ORTHO05D007004 4.6e-14 80.5 53 69.8
THA.LOC104821401 Tarenaya hassleriana HOM05D005662 ORTHO05D007004 4.6e-14 80.5 53 69.8
vmacro06774 Vaccinium macrocarpon HOM05D005662 ORTHO05D007004 6.0e-14 80.1 53 67.9
HanXRQChr08g0223561 Helianthus annuus HOM05D005662 ORTHO05D007004 7.8e-14 79.7 54 68.5
Potri.015G129900 Populus trichocarpa HOM05D005662 ORTHO05D007004 7.8e-14 79.7 53 64.2
Hund04625 Selenicereus undatus HOM05D005662 ORTHO05D007004 7.8e-14 79.7 54 68.5
TWI39G1176 Tripterygium wilfordii HOM05D005662 ORTHO05D007004 1.0e-13 79.3 53 64.2
Gohir.D07G210500 Gossypium hirsutum HOM05D005662 ORTHO05D007004 1.3e-13 79.0 53 60.4
Gorai.001G237900 Gossypium raimondii HOM05D005662 ORTHO05D007004 1.3e-13 79.0 53 60.4
Duzib205G1232 Durio zibethinus HOM05D005662 ORTHO05D007004 1.7e-13 78.6 53 64.2
Thhalv10004861m.g Eutrema salsugineum HOM05D005662 ORTHO05D007004 1.7e-13 78.6 53 67.9
Ah.13g067320 Amaranthus hybridus HOM05D005662 ORTHO05D007004 2.3e-13 78.2 54 64.8
CiPaw.03G096300 Carya illinoinensis HOM05D005662 ORTHO05D007004 2.3e-13 78.2 53 64.2
Sabra15G0143400 Salix brachista HOM05D005662 ORTHO05D007004 2.3e-13 78.2 54 59.3
Thecc.03G160400 Theobroma cacao HOM05D005662 ORTHO05D007004 2.3e-13 78.2 53 66.0
Lsat_1_v5_gn_8_9401 Lactuca sativa HOM05D005662 ORTHO05D007004 3.0e-13 77.8 56 62.5
Atru.chr1.651 Acer truncatum HOM05D005662 ORTHO05D007004 5.0e-13 77.0 53 66.0
Aa31LG11G1300 Aethionema arabicum HOM05D005662 ORTHO05D007004 6.6e-13 76.6 53 64.2
ECA232G3412 Erigeron canadensis HOM05D005662 ORTHO05D007004 8.6e-13 76.3 54 64.8
FvH4_7g28050 Fragaria vesca HOM05D005662 ORTHO05D007004 8.6e-13 76.3 51 68.6
RcHm_v2.0_Chr1g0374961 Rosa chinensis HOM05D005662 ORTHO05D007004 1.1e-12 75.9 50 70.0
AT5G62290 Arabidopsis thaliana HOM05D005662 ORTHO05D007004 1.5e-12 75.5 55 61.8
Manes.06G137000 Manihot esculenta HOM05D005662 ORTHO05D007004 1.5e-12 75.5 53 60.4
SGA_v2.0_scaffold486G52387 Striga asiatica HOM05D005662 ORTHO05D007004 1.9e-12 75.1 56 67.9
CDE02G0217 Ceratophyllum demersum HOM05D005662 ORTHO05D007004 2.5e-12 74.7 53 60.4
AL8G39110 Arabidopsis lyrata HOM05D005662 ORTHO05D007004 3.3e-12 74.3 53 64.2
MD07G1257000 Malus domestica HOM05D005662 ORTHO05D007004 3.3e-12 74.3 56 62.5
Sp2g25490 Schrenkiella parvula HOM05D005662 ORTHO05D007004 4.3e-12 73.9 53 64.2
A06p29040 Brassica napus HOM05D000207 ORTHO05D001482 5.6e-12 73.6 55 60.0
BraA06t25849Z Brassica rapa HOM05D005662 ORTHO05D007004 5.6e-12 73.6 55 60.0
Prupe.2G281200 Prunus persica HOM05D005662 ORTHO05D007004 5.6e-12 73.6 56 60.7
Gohir.A07G204500 Gossypium hirsutum HOM05D005662 ORTHO05D007004 1.6e-11 72.0 53 56.6
C03p64570 Brassica napus HOM05D000207 ORTHO05D001482 2.1e-11 71.6 53 62.3
BolC3t18716H Brassica oleracea HOM05D005662 ORTHO05D007004 2.1e-11 71.6 53 62.3
ATR0733G084 Amborella trichopoda HOM05D005662 ORTHO05D007004 2.8e-11 71.2 53 60.4
C02p62090 Brassica napus HOM05D005662 ORTHO05D007004 2.8e-11 71.2 53 66.0
BcaB07g29785 Brassica carinata HOM05D005662 ORTHO05D007004 4.7e-11 70.5 53 64.2
Duzib084G0609 Durio zibethinus HOM05D005662 ORTHO05D007004 6.2e-11 70.1 53 60.4
HanXRQChr16g0512531 Helianthus annuus HOM05D005662 ORTHO05D007004 6.2e-11 70.1 55 61.8
MD01G1184800 Malus domestica HOM05D005662 ORTHO05D007004 6.2e-11 70.1 56 57.1
Potri.012G128500 Populus trichocarpa HOM05D005662 ORTHO05D007004 6.2e-11 70.1 53 60.4
MELO3C005412.2 Cucumis melo HOM05D005662 ORTHO05D007004 8.0e-11 69.7 53 56.6
BraA02t09152Z Brassica rapa HOM05D005662 ORTHO05D007004 1.1e-10 69.3 53 64.2
A02p42240 Brassica napus HOM05D005662 ORTHO05D007004 1.4e-10 68.9 53 64.2
Sabra12G0096500 Salix brachista HOM05D005662 ORTHO05D007004 1.8e-10 68.6 53 60.4
Sc13g0007790 Simmondsia chinensis HOM05D005662 ORTHO05D007004 2.3e-10 68.2 53 60.4
Lsat_1_v5_gn_9_52481 Lactuca sativa HOM05D005662 ORTHO05D007004 4.0e-10 67.4 54 61.1
Phvul.011G004300 Phaseolus vulgaris HOM05D005662 ORTHO05D007004 4.0e-10 67.4 41 73.2
ClCG01G005160 Citrullus lanatus HOM05D005662 ORTHO05D007004 5.2e-10 67.0 53 54.7
Sed0027239 Sechium edule HOM05D005662 ORTHO05D007004 8.9e-10 66.2 53 54.7
Glyma.14G044000 Glycine max HOM05D005662 ORTHO05D007004 1.5e-09 65.5 41 70.7
Aqoxy7G00656 Aquilegia oxysepala HOM05D005662 ORTHO05D007004 2.6e-09 64.7 65 50.8
Rhsim03G0170700 Rhododendron simsii HOM05D005662 ORTHO05D007004 3.4e-09 64.3 43 62.8
VMungo1127G2067 Vigna mungo HOM05D005662 ORTHO05D007004 3.4e-09 64.3 41 73.2
DCAR_015743 Daucus carota HOM05D005662 ORTHO05D007004 4.4e-09 63.9 53 54.7
HPP92_004603 Vanilla planifolia HOM05D005662 ORTHO05D007004 5.8e-09 63.5 53 56.6
arahy.Tifrunner.gnm1.ann1.QSR7PX Arachis hypogaea HOM05D005662 ORTHO05D007004 1.7e-08 62.0 52 57.7
arahy.Tifrunner.gnm1.ann1.6UH5I2 Arachis hypogaea HOM05D005662 ORTHO05D007004 2.2e-08 61.6 52 57.7
arahy.Tifrunner.gnm1.ann1.93Q1AU Arachis hypogaea HOM05D005662 ORTHO05D007004 2.2e-08 61.6 52 57.7
unitig_37.g12504 Utricularia gibba HOM05D005662 ORTHO05D007004 2.2e-08 61.6 38 71.1
Ca_00244_v3 Cicer arietinum L. HOM05D005662 ORTHO05D007004 2.9e-08 61.2 41 63.4
Ca_30761_v3 Cicer arietinum L. HOM05D005662 ORTHO05D007004 2.9e-08 61.2 41 63.4
SEGI_33447 Sequoiadendron giganteum HOM05D005662 ORTHO05D007004 2.9e-08 61.2 53 60.4
arahy.Tifrunner.gnm1.ann1.TMT042 Arachis hypogaea HOM05D005662 ORTHO05D007004 3.7e-08 60.8 52 57.7
CBR_g40194 Chara braunii HOM05D005662 ORTHO05D007004 3.7e-08 60.8 54 57.4
Haze_13835 Corylus avellana HOM05D005662 ORTHO05D007004 3.7e-08 60.8 37 67.6
Glyma.09G233200 Glycine max HOM05D005662 ORTHO05D007004 4.9e-08 60.5 41 65.9
Psat7g191960 Pisum sativum HOM05D005662 ORTHO05D007004 6.4e-08 60.1 40 65.0
TPR.G15119 Trifolium pratense HOM05D005662 ORTHO05D007004 1.4e-07 58.9 41 61.0
Medtr4g033850 Medicago truncatula HOM05D005662 ORTHO05D007004 3.2e-07 57.8 41 61.0
Lalb_Chr15g0077021 Lupinus albus HOM05D005662 ORTHO05D007004 9.2e-07 56.2 46 56.5
Lj3g0023650 Lotus japonicus HOM05D005662 ORTHO05D007004 2.1e-06 55.1 51 54.9
arahy.Tifrunner.gnm1.ann1.LZP622 Arachis hypogaea HOM05D005662 ORTHO05D007004 2.7e-06 54.7 52 53.8


User provided reference genes

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