Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc06g011320.2 Solanum lycopersicum HOM05D002585 ORTHO05D002917 3.3e-73 278.5 161 100.0
Sopen06g005510 Solanum pennellii HOM05D002585 ORTHO05D002917 1.1e-41 173.7 117 91.5
Peaxi162Scf00529g00035 Petunia axillaris HOM05D002585 ORTHO05D002917 3.0e-34 149.1 117 65.8
Nitab4.5_0004314g0020 Nicotiana tabacum HOM05D002585 ORTHO05D002917 7.4e-33 144.4 118 80.5
Nitab4.5_0000181g0090 Nicotiana tabacum HOM05D002585 ORTHO05D002917 9.7e-33 144.1 118 80.5
Nitab4.5_0005208g0050 Nicotiana tabacum HOM05D002585 ORTHO05D002917 2.2e-21 106.3 124 51.6
Solyc10g083840.1 Solanum lycopersicum HOM05D002585 ORTHO05D002917 1.4e-20 103.6 119 54.6
Nitab4.5_0000132g0480 Nicotiana tabacum HOM05D002585 ORTHO05D002917 4.2e-20 102.1 118 53.4
Sopen10g033280 Solanum pennellii HOM05D002585 ORTHO05D002917 4.2e-20 102.1 118 52.5
CAN.G541.44 Capsicum annuum HOM05D002585 ORTHO05D002917 2.1e-19 99.8 118 50.8
Peaxi162Scf00110g00619 Petunia axillaris HOM05D002585 ORTHO05D002917 3.0e-18 95.9 118 51.7
Lsat_1_v5_gn_8_145640 Lactuca sativa HOM05D002585 ORTHO05D002917 3.7e-16 89.0 117 46.2
PGSC0003DMG402009595 Solanum tuberosum HOM05D002585 ORTHO05D023007 8.2e-16 87.8 131 46.6
Dinv37345 Davidia involucrata HOM05D002585 ORTHO05D002917 1.1e-15 87.4 119 43.7
Peaxi162Scf00247g00105 Petunia axillaris HOM05D002585 ORTHO05D002917 1.1e-15 87.4 119 45.4
Actinidia28922 Actinidia chinensis HOM05D002585 ORTHO05D002917 3.1e-15 85.9 117 46.2
Rhsim03G0088700 Rhododendron simsii HOM05D002585 ORTHO05D002917 3.1e-15 85.9 117 46.2
Sopen10g033290 Solanum pennellii HOM05D002585 ORTHO05D002917 3.1e-15 85.9 119 47.9
PGSC0003DMG400028277 Solanum tuberosum HOM05D002585 ORTHO05D002917 4.1e-15 85.5 119 47.9
Nitab4.5_0008265g0020 Nicotiana tabacum HOM05D002585 ORTHO05D002917 5.3e-15 85.1 119 43.7
MSTRG.26675 Avicennia marina HOM05D002585 ORTHO05D002917 6.9e-15 84.7 117 42.7
Migut.L01723 Erythranthe guttata HOM05D002585 ORTHO05D002917 1.2e-14 84.0 118 43.2
Sopen01g025490 Solanum pennellii HOM05D002585 ORTHO05D023007 1.2e-14 84.0 120 45.0
ECA233G1422 Erigeron canadensis HOM05D002585 ORTHO05D002917 1.5e-14 83.6 117 46.2
Cc06_g04600 Coffea canephora HOM05D002585 ORTHO05D002917 2.0e-14 83.2 117 43.6
vmacro07324 Vaccinium macrocarpon HOM05D002585 ORTHO05D002917 2.0e-14 83.2 117 43.6
Hma1.2p1_0547F.1_g176480 Hydrangea macrophylla HOM05D002585 ORTHO05D002917 2.6e-14 82.8 119 42.0
CSS0049154 Camellia sinensis var. sinensis HOM05D002585 ORTHO05D002917 3.4e-14 82.4 117 41.0
Haze_19443 Corylus avellana HOM05D002585 ORTHO05D002917 4.5e-14 82.0 117 41.9
Oeu041475.1 Olea europaea HOM05D002585 ORTHO05D002917 4.5e-14 82.0 117 40.2
Sed0026659 Sechium edule HOM05D002585 ORTHO05D002917 5.9e-14 81.6 116 39.7
Cfa021472 Carpinus fangiana HOM05D002585 ORTHO05D002917 7.7e-14 81.3 117 41.0
Lj3C991T4 Lonicera japonica HOM05D002585 ORTHO05D002917 7.7e-14 81.3 118 42.4
PSO063G7003 Papaver somniferum HOM05D002585 ORTHO05D002917 1.0e-13 80.9 118 43.2
DCAR_015012 Daucus carota HOM05D002585 ORTHO05D002917 1.3e-13 80.5 118 41.5
PGSC0003DMG400019013 Solanum tuberosum HOM05D002585 ORTHO05D023007 1.3e-13 80.5 119 46.2
Sopen01g019530 Solanum pennellii HOM05D002585 ORTHO05D002917 2.2e-13 79.7 119 44.5
SalBow5G3646 Salvia bowleyana HOM05D002585 ORTHO05D002917 2.9e-13 79.3 117 38.5
SalBow5G4367 Salvia bowleyana HOM05D002585 ORTHO05D002917 2.9e-13 79.3 117 38.5
Nitab4.5_0000217g0060 Nicotiana tabacum HOM05D002585 ORTHO05D002917 3.8e-13 79.0 117 41.9
Duzib093G2252 Durio zibethinus HOM05D002585 ORTHO05D002917 6.5e-13 78.2 117 41.9
COL.COLO4_26904 Corchorus olitorius HOM05D002585 ORTHO05D002917 8.5e-13 77.8 117 43.6
PSO339G5475 Papaver somniferum HOM05D002585 ORTHO05D002917 8.5e-13 77.8 118 41.5
HanXRQChr05g0144541 Helianthus annuus HOM05D002585 ORTHO05D002917 1.1e-12 77.4 121 41.3
QL07p042117 Quercus lobata HOM05D002585 ORTHO05D002917 1.1e-12 77.4 117 41.9
SGA_v2.0_scaffold224G42925 Striga asiatica HOM05D002585 ORTHO05D002917 1.1e-12 77.4 117 39.3
GSVIVG01033692001 Vitis vinifera HOM05D002585 ORTHO05D002917 1.4e-12 77.0 117 42.7
Sed0005893 Sechium edule HOM05D002585 ORTHO05D002917 1.9e-12 76.6 117 41.0
ClCG04G009500 Citrullus lanatus HOM05D002585 ORTHO05D002917 2.5e-12 76.3 116 37.1
QL07p042139 Quercus lobata HOM05D002585 ORTHO05D002917 3.2e-12 75.9 117 40.2
Thecc.05G072300 Theobroma cacao HOM05D002585 ORTHO05D002917 3.2e-12 75.9 120 40.0
MD13G1277900 Malus domestica HOM05D002585 ORTHO05D002917 5.5e-12 75.1 117 39.3
unitig_8.g4719 Utricularia gibba HOM05D002585 ORTHO05D002917 1.6e-11 73.6 117 40.2
Eucgr.A01617 Eucalyptus grandis HOM05D002585 ORTHO05D002917 2.1e-11 73.2 117 38.5
Manes.08G013700 Manihot esculenta HOM05D002585 ORTHO05D002917 2.1e-11 73.2 117 36.8
TAR369G0251 Trochodendron aralioides HOM05D002585 ORTHO05D002917 2.1e-11 73.2 117 37.6
Atru.chr8.1743 Acer truncatum HOM05D002585 ORTHO05D002917 2.7e-11 72.8 117 39.3
Ciclev10011061m.g Citrus clementina HOM05D002585 ORTHO05D002917 2.7e-11 72.8 117 37.6
FAN05G4117 Fragaria x ananassa HOM05D002585 ORTHO05D002917 2.7e-11 72.8 117 39.3
FAN05G4263 Fragaria x ananassa HOM05D002585 ORTHO05D002917 2.7e-11 72.8 117 39.3
Gorai.002G160800 Gossypium raimondii HOM05D002585 ORTHO05D002917 2.7e-11 72.8 117 39.3
Sed0020289 Sechium edule HOM05D002585 ORTHO05D002917 2.7e-11 72.8 117 39.3
CiPaw.09G003100 Carya illinoinensis HOM05D002585 ORTHO05D002917 3.6e-11 72.4 117 38.5
Phvul.007G152500 Phaseolus vulgaris HOM05D002585 ORTHO05D002917 3.6e-11 72.4 119 37.8
Sed0002653 Sechium edule HOM05D002585 ORTHO05D002917 3.6e-11 72.4 116 37.9
VMungo0720G3162 Vigna mungo HOM05D002585 ORTHO05D002917 3.6e-11 72.4 118 37.3
MELO3C024485.2 Cucumis melo HOM05D002585 ORTHO05D002917 4.7e-11 72.0 117 35.9
FAN02G4184 Fragaria x ananassa HOM05D002585 ORTHO05D002917 4.7e-11 72.0 117 40.2
Prupe.7G124800 Prunus persica HOM05D002585 ORTHO05D002917 4.7e-11 72.0 117 41.0
Sed0022969 Sechium edule HOM05D002585 ORTHO05D002917 4.7e-11 72.0 117 35.9
Hund20555 Selenicereus undatus HOM05D002585 ORTHO05D002917 4.7e-11 72.0 117 38.5
THA.LOC104825825 Tarenaya hassleriana HOM05D002585 ORTHO05D002917 4.7e-11 72.0 117 37.6
Lj5g0002795 Lotus japonicus HOM05D002585 ORTHO05D002917 6.1e-11 71.6 117 38.5
RcHm_v2.0_Chr5g0018301 Rosa chinensis HOM05D002585 ORTHO05D002917 6.1e-11 71.6 117 39.3
CsaV3_6G040120 Cucumis sativus L. HOM05D002585 ORTHO05D002917 8.0e-11 71.2 117 35.9
Sed0005462 Sechium edule HOM05D002585 ORTHO05D002917 8.0e-11 71.2 117 36.8
Aqoxy195s007 Aquilegia oxysepala HOM05D002585 ORTHO05D002917 1.0e-10 70.9 117 39.3
Aqoxy1G01087 Aquilegia oxysepala HOM05D002585 ORTHO05D002917 1.0e-10 70.9 117 39.3
CARHR163130 Cardamine hirsuta HOM05D002585 ORTHO05D002917 1.0e-10 70.9 117 36.8
Manes.08G013600 Manihot esculenta HOM05D002585 ORTHO05D002917 1.0e-10 70.9 117 36.8
Potri.006G121000 Populus trichocarpa HOM05D002585 ORTHO05D002917 1.0e-10 70.9 117 37.6
Gohir.D01G129800 Gossypium hirsutum HOM05D002585 ORTHO05D002917 1.4e-10 70.5 117 38.5
Medtr1g062650 Medicago truncatula HOM05D002585 ORTHO05D002917 1.4e-10 70.5 117 37.6
PGR004G2132 Punica granatum HOM05D002585 ORTHO05D002917 1.4e-10 70.5 117 38.5
TPR.G21005 Trifolium pratense HOM05D002585 ORTHO05D002917 1.4e-10 70.5 117 36.8
EL10Ac7g16696 Beta vulgaris HOM05D002585 ORTHO05D002917 1.8e-10 70.1 117 39.3
arahy.Tifrunner.gnm1.ann1.7710RN Arachis hypogaea HOM05D002585 ORTHO05D002917 2.3e-10 69.7 117 41.0
arahy.Tifrunner.gnm1.ann1.7YQ2TW Arachis hypogaea HOM05D002585 ORTHO05D002917 2.3e-10 69.7 117 41.0
arahy.Tifrunner.gnm1.ann1.SIB7C5 Arachis hypogaea HOM05D002585 ORTHO05D002917 2.3e-10 69.7 117 41.0
arahy.Tifrunner.gnm1.ann1.YR6AFM Arachis hypogaea HOM05D002585 ORTHO05D002917 2.3e-10 69.7 117 41.0
CANSAT35G1791 Cannabis sativa HOM05D002585 ORTHO05D002917 2.3e-10 69.7 117 38.5
Ca_11569_v3 Cicer arietinum L. HOM05D002585 ORTHO05D002917 2.3e-10 69.7 118 35.6
Gohir.D04G108400 Gossypium hirsutum HOM05D002585 ORTHO05D002917 2.3e-10 69.7 117 41.0
Lalb_Chr21g0315161 Lupinus albus HOM05D002585 ORTHO05D002917 2.3e-10 69.7 117 36.8
CANSAT80G2890 Cannabis sativa HOM05D002585 ORTHO05D002917 3.0e-10 69.3 117 37.6
Glyma.10G060200 Glycine max HOM05D002585 ORTHO05D002917 3.0e-10 69.3 117 37.6
Gorai.009G412500 Gossypium raimondii HOM05D002585 ORTHO05D002917 3.0e-10 69.3 117 40.2
AUR62026959 Chenopodium quinoa HOM05D002585 ORTHO05D002917 3.9e-10 68.9 120 39.2
MBI17_g25733_MAGBIO Magnolia biondii HOM05D002585 ORTHO05D002917 3.9e-10 68.9 120 36.7
BcaC08g44624 Brassica carinata HOM05D002585 ORTHO05D002917 5.2e-10 68.6 117 38.5
C06p21020 Brassica napus HOM05D002585 ORTHO05D002917 5.2e-10 68.6 117 38.5
BolC6t37286H Brassica oleracea HOM05D002585 ORTHO05D002917 5.2e-10 68.6 117 38.5
Gohir.A04G069800 Gossypium hirsutum HOM05D002585 ORTHO05D002917 5.2e-10 68.6 117 40.2
Sp5g09150 Schrenkiella parvula HOM05D002585 ORTHO05D002917 5.2e-10 68.6 117 37.6
Zm00001eb046790 Zea mays HOM05D002585 ORTHO05D002917 5.2e-10 68.6 117 38.5
FvH4_6g16930 Fragaria vesca HOM05D002585 ORTHO05D002917 6.7e-10 68.2 117 38.5
FAN14G4746 Fragaria x ananassa HOM05D002585 ORTHO05D002917 6.7e-10 68.2 117 38.5
AL5G34060 Arabidopsis lyrata HOM05D002585 ORTHO05D002917 8.8e-10 67.8 117 36.8
BcaB01g00304 Brassica carinata HOM05D002585 ORTHO05D002917 8.8e-10 67.8 117 38.5
Psat0s3029g0040 Pisum sativum HOM05D002585 ORTHO05D002917 8.8e-10 67.8 118 35.6
Sabra06G0095200 Salix brachista HOM05D002585 ORTHO05D002917 8.8e-10 67.8 117 36.8
A09p46170 Brassica napus HOM05D002585 ORTHO05D002917 1.1e-09 67.4 117 37.6
Cpa.g.sc5.155 Carica papaya HOM05D002585 ORTHO05D002917 1.1e-09 67.4 116 35.3
Nn6g35210 Nelumbo nucifera HOM05D002585 ORTHO05D002917 1.5e-09 67.0 117 35.0
RcHm_v2.0_Chr3g0470971 Rosa chinensis HOM05D002585 ORTHO05D002917 1.5e-09 67.0 117 36.8
AT3G53180 Arabidopsis thaliana HOM05D002585 ORTHO05D002917 2.6e-09 66.2 117 36.8
CANSAT80G1527 Cannabis sativa HOM05D002585 ORTHO05D002917 2.6e-09 66.2 117 38.5
Aa31LG10G8350 Aethionema arabicum HOM05D002585 ORTHO05D002917 4.4e-09 65.5 117 38.5
TWI53G0795 Tripterygium wilfordii HOM05D002585 ORTHO05D002917 4.4e-09 65.5 116 36.2
Thhalv10010120m.g Eutrema salsugineum HOM05D002585 ORTHO05D002917 5.7e-09 65.1 117 37.6
BraA07t29828Z Brassica rapa HOM05D002585 ORTHO05D002917 7.4e-09 64.7 117 37.6
Sc20g0005720 Simmondsia chinensis HOM05D002585 ORTHO05D002917 7.4e-09 64.7 117 35.0
BcaC07g39674 Brassica carinata HOM05D002585 ORTHO05D002917 9.7e-09 64.3 117 35.9
C08p28400 Brassica napus HOM05D002585 ORTHO05D002917 9.7e-09 64.3 117 35.9
BolC8t50450H Brassica oleracea HOM05D002585 ORTHO05D002917 9.7e-09 64.3 117 35.9
BraA09t40081Z Brassica rapa HOM05D002585 ORTHO05D002917 9.7e-09 64.3 117 35.9
A07p21410 Brassica napus HOM05D002585 ORTHO05D002917 1.3e-08 63.9 117 37.6
Carub.0005s1971 Capsella rubella HOM05D002585 ORTHO05D002917 2.2e-08 63.2 117 34.2
Medtr1g062620 Medicago truncatula HOM05D002585 ORTHO05D002917 2.2e-08 63.2 117 34.2
HPP92_008392 Vanilla planifolia HOM05D002585 ORTHO05D002917 2.2e-08 63.2 116 35.3
CAN.G541.45 Capsicum annuum HOM05D002585 ORTHO05D002917 3.7e-08 62.4 69 58.0
Os10g0456500 Oryza sativa ssp. japonica HOM05D002585 ORTHO05D002917 3.7e-08 62.4 117 35.0
ATR0043G008 Amborella trichopoda HOM05D002585 ORTHO05D002917 4.8e-08 62.0 117 32.5
Dinv35818 Davidia involucrata HOM05D002585 ORTHO05D002917 4.8e-08 62.0 117 34.2
Nitab4.5_0003945g0170 Nicotiana tabacum HOM05D002585 ORTHO05D023007 1.1e-07 60.8 75 48.0
Solyc10g083850.3 Solanum lycopersicum HOM05D002585 ORTHO05D002917 1.8e-07 60.1 117 34.2
Ah.15g091400 Amaranthus hybridus HOM05D002585 ORTHO05D002917 2.4e-07 59.7 117 33.3
Peaxi162Scf00958g00520 Petunia axillaris HOM05D002585 ORTHO05D002917 3.1e-07 59.3 77 45.5
Solyc01g056440.1 Solanum lycopersicum HOM05D002585 ORTHO05D023007 3.1e-07 59.3 109 42.2
Peaxi162Scf00780g01019 Petunia axillaris HOM05D002585 ORTHO05D002917 4.1e-07 58.9 77 44.2
AUR62041382 Chenopodium quinoa HOM05D002585 ORTHO05D002917 2.0e-06 56.6 46 56.5
Lalb_Chr21g0315141 Lupinus albus HOM05D002585 ORTHO05D002917 3.5e-06 55.8 44 59.1
Lj5g0007956 Lotus japonicus HOM05D002585 ORTHO05D002917 4.5e-06 55.5 44 56.8
Lalb_Chr02g0155471 Lupinus albus HOM05D002585 ORTHO05D002917 5.9e-06 55.1 44 61.4
VMungo0720G1363 Vigna mungo HOM05D002585 ORTHO05D002917 5.9e-06 55.1 44 59.1


User provided reference genes

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