Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc06g011290.3 Solanum lycopersicum HOM05D002585 ORTHO05D002917 3.5e-222 774.6 391 100.0
Sopen06g005510 Solanum pennellii HOM05D002585 ORTHO05D002917 4.9e-155 551.6 371 80.1
Nitab4.5_0000181g0090 Nicotiana tabacum HOM05D002585 ORTHO05D002917 3.9e-128 462.2 328 73.8
Peaxi162Scf00529g00035 Petunia axillaris HOM05D002585 ORTHO05D002917 9.6e-127 457.6 338 71.6
Nitab4.5_0000132g0480 Nicotiana tabacum HOM05D002585 ORTHO05D002917 2.1e-105 386.7 347 61.7
Solyc10g083840.1 Solanum lycopersicum HOM05D002585 ORTHO05D002917 5.7e-103 378.6 340 60.3
CAN.G541.44 Capsicum annuum HOM05D002585 ORTHO05D002917 6.9e-101 371.7 322 62.4
Nitab4.5_0005208g0050 Nicotiana tabacum HOM05D002585 ORTHO05D002917 3.4e-100 369.4 332 60.2
Sopen10g033280 Solanum pennellii HOM05D002585 ORTHO05D002917 1.7e-99 367.1 349 57.6
Peaxi162Scf00110g00619 Petunia axillaris HOM05D002585 ORTHO05D002917 8.7e-96 354.8 344 56.4
Medtr1g062650 Medicago truncatula HOM05D002585 ORTHO05D002917 9.0e-93 344.7 327 56.0
Nitab4.5_0008265g0020 Nicotiana tabacum HOM05D002585 ORTHO05D002917 4.5e-92 342.4 328 57.3
Solyc10g083850.3 Solanum lycopersicum HOM05D002585 ORTHO05D002917 5.9e-92 342.0 313 59.4
Dinv37345 Davidia involucrata HOM05D002585 ORTHO05D002917 7.7e-92 341.7 328 56.1
Nitab4.5_0000217g0060 Nicotiana tabacum HOM05D002585 ORTHO05D002917 2.2e-91 340.1 323 57.0
Oeu041475.1 Olea europaea HOM05D002585 ORTHO05D002917 2.2e-91 340.1 324 56.8
Medtr1g062620 Medicago truncatula HOM05D002585 ORTHO05D002917 2.9e-91 339.7 327 56.0
QL07p042117 Quercus lobata HOM05D002585 ORTHO05D002917 2.9e-91 339.7 325 56.0
Lj5g0002795 Lotus japonicus HOM05D002585 ORTHO05D002917 5.0e-91 339.0 326 55.2
Peaxi162Scf00958g00520 Petunia axillaris HOM05D002585 ORTHO05D002917 1.9e-90 337.0 320 56.2
DCAR_015012 Daucus carota HOM05D002585 ORTHO05D002917 5.5e-90 335.5 323 55.7
Migut.L01723 Erythranthe guttata HOM05D002585 ORTHO05D002917 1.2e-89 334.3 345 52.2
Sopen10g033290 Solanum pennellii HOM05D002585 ORTHO05D002917 1.2e-89 334.3 315 57.5
Cfa021472 Carpinus fangiana HOM05D002585 ORTHO05D002917 1.6e-89 334.0 326 54.6
Glyma.10G060200 Glycine max HOM05D002585 ORTHO05D002917 1.6e-89 334.0 325 55.1
Rhsim03G0088700 Rhododendron simsii HOM05D002585 ORTHO05D002917 3.6e-89 332.8 326 55.5
CSS0049154 Camellia sinensis var. sinensis HOM05D002585 ORTHO05D002917 4.6e-89 332.4 340 53.2
Psat0s3029g0040 Pisum sativum HOM05D002585 ORTHO05D002917 4.6e-89 332.4 325 55.4
TPR.G21005 Trifolium pratense HOM05D002585 ORTHO05D002917 4.6e-89 332.4 323 55.7
Prupe.7G124800 Prunus persica HOM05D002585 ORTHO05D002917 6.1e-89 332.0 326 54.3
Phvul.007G152500 Phaseolus vulgaris HOM05D002585 ORTHO05D002917 7.9e-89 331.6 325 54.2
Lalb_Chr21g0315161 Lupinus albus HOM05D002585 ORTHO05D002917 1.4e-88 330.9 325 54.2
FAN05G4117 Fragaria x ananassa HOM05D002585 ORTHO05D002917 1.8e-88 330.5 327 54.1
Lj3C991T4 Lonicera japonica HOM05D002585 ORTHO05D002917 1.8e-88 330.5 348 53.4
Sabra06G0095200 Salix brachista HOM05D002585 ORTHO05D002917 3.9e-88 329.3 341 54.0
Potri.006G121000 Populus trichocarpa HOM05D002585 ORTHO05D002917 5.1e-88 328.9 344 52.3
TAR369G0251 Trochodendron aralioides HOM05D002585 ORTHO05D002917 5.1e-88 328.9 319 56.4
Hma1.2p1_0547F.1_g176480 Hydrangea macrophylla HOM05D002585 ORTHO05D002917 6.7e-88 328.6 324 55.9
Ca_11569_v3 Cicer arietinum L. HOM05D002585 ORTHO05D002917 1.5e-87 327.4 344 51.7
MSTRG.26675 Avicennia marina HOM05D002585 ORTHO05D002917 2.5e-87 326.6 345 51.0
FvH4_6g16930 Fragaria vesca HOM05D002585 ORTHO05D002917 2.5e-87 326.6 326 53.7
VMungo0720G0437 Vigna mungo HOM05D002585 ORTHO05D002917 2.5e-87 326.6 335 52.8
CsaV3_6G040120 Cucumis sativus L. HOM05D002585 ORTHO05D002917 5.7e-87 325.5 364 49.5
Gorai.009G412500 Gossypium raimondii HOM05D002585 ORTHO05D002917 5.7e-87 325.5 328 53.4
GSVIVG01033692001 Vitis vinifera HOM05D002585 ORTHO05D002917 7.4e-87 325.1 324 54.0
Gohir.D04G108400 Gossypium hirsutum HOM05D002585 ORTHO05D002917 9.7e-87 324.7 360 50.8
Sc20g0005720 Simmondsia chinensis HOM05D002585 ORTHO05D002917 2.2e-86 323.6 325 54.8
Nn6g35210 Nelumbo nucifera HOM05D002585 ORTHO05D002917 2.8e-86 323.2 316 56.0
FAN14G4746 Fragaria x ananassa HOM05D002585 ORTHO05D002917 8.2e-86 321.6 326 53.1
MD13G1277900 Malus domestica HOM05D002585 ORTHO05D002917 8.2e-86 321.6 326 52.5
Manes.08G013600 Manihot esculenta HOM05D002585 ORTHO05D002917 8.2e-86 321.6 338 53.0
PGSC0003DMG400028277 Solanum tuberosum HOM05D002585 ORTHO05D002917 1.1e-85 321.2 315 55.2
ECA233G1422 Erigeron canadensis HOM05D002585 ORTHO05D002917 1.4e-85 320.9 337 52.8
FAN05G4263 Fragaria x ananassa HOM05D002585 ORTHO05D002917 4.1e-85 319.3 331 52.9
SalBow5G3646 Salvia bowleyana HOM05D002585 ORTHO05D002917 6.9e-85 318.5 335 51.9
TWI53G0795 Tripterygium wilfordii HOM05D002585 ORTHO05D002917 2.0e-84 317.0 326 52.8
CANSAT80G1527 Cannabis sativa HOM05D002585 ORTHO05D002917 2.6e-84 316.6 326 53.4
RcHm_v2.0_Chr3g0470971 Rosa chinensis HOM05D002585 ORTHO05D002917 4.5e-84 315.8 319 54.2
CANSAT80G2890 Cannabis sativa HOM05D002585 ORTHO05D002917 5.9e-84 315.5 326 53.4
SGA_v2.0_scaffold224G42925 Striga asiatica HOM05D002585 ORTHO05D002917 7.7e-84 315.1 329 51.7
Atru.chr8.1743 Acer truncatum HOM05D002585 ORTHO05D002917 1.3e-83 314.3 325 52.6
Cc06_g04600 Coffea canephora HOM05D002585 ORTHO05D002917 1.3e-83 314.3 352 50.3
Lsat_1_v5_gn_8_145640 Lactuca sativa HOM05D002585 ORTHO05D002917 2.2e-83 313.5 325 54.2
Thecc.05G072300 Theobroma cacao HOM05D002585 ORTHO05D002917 2.2e-83 313.5 325 52.0
Eucgr.A01617 Eucalyptus grandis HOM05D002585 ORTHO05D002917 3.8e-83 312.8 324 51.2
Aa31LG10G8350 Aethionema arabicum HOM05D002585 ORTHO05D002917 8.5e-83 311.6 332 50.0
Ca_05180_v3 Cicer arietinum L. HOM05D002585 ORTHO05D002917 8.5e-83 311.6 334 50.9
Ciclev10011061m.g Citrus clementina HOM05D002585 ORTHO05D002917 1.1e-82 311.2 329 51.7
Duzib093G2252 Durio zibethinus HOM05D002585 ORTHO05D002917 1.1e-82 311.2 325 52.3
arahy.Tifrunner.gnm1.ann1.7710RN Arachis hypogaea HOM05D002585 ORTHO05D002917 1.9e-82 310.5 316 53.2
arahy.Tifrunner.gnm1.ann1.7YQ2TW Arachis hypogaea HOM05D002585 ORTHO05D002917 1.9e-82 310.5 316 53.2
arahy.Tifrunner.gnm1.ann1.SIB7C5 Arachis hypogaea HOM05D002585 ORTHO05D002917 1.9e-82 310.5 316 53.2
arahy.Tifrunner.gnm1.ann1.YR6AFM Arachis hypogaea HOM05D002585 ORTHO05D002917 1.9e-82 310.5 316 53.2
CARHR163130 Cardamine hirsuta HOM05D002585 ORTHO05D002917 1.9e-82 310.5 325 51.1
PSO063G7003 Papaver somniferum HOM05D002585 ORTHO05D002917 1.9e-82 310.5 316 52.8
RcHm_v2.0_Chr5g0018301 Rosa chinensis HOM05D002585 ORTHO05D002917 1.9e-82 310.5 326 51.8
THA.LOC104825825 Tarenaya hassleriana HOM05D002585 ORTHO05D002917 2.5e-82 310.1 326 50.6
ATR0043G008 Amborella trichopoda HOM05D002585 ORTHO05D002917 3.2e-82 309.7 334 51.5
Sed0026659 Sechium edule HOM05D002585 ORTHO05D002917 3.2e-82 309.7 319 53.3
Aqoxy1G01087 Aquilegia oxysepala HOM05D002585 ORTHO05D002917 4.2e-82 309.3 316 51.6
Cpa.g.sc5.155 Carica papaya HOM05D002585 ORTHO05D002917 7.2e-82 308.5 325 50.8
BraA09t40081Z Brassica rapa HOM05D002585 ORTHO05D002917 1.6e-81 307.4 325 52.0
Medtr1g062710 Medicago truncatula HOM05D002585 ORTHO05D002917 2.1e-81 307.0 334 49.4
PSO339G5475 Papaver somniferum HOM05D002585 ORTHO05D002917 2.1e-81 307.0 316 52.2
AL5G34060 Arabidopsis lyrata HOM05D002585 ORTHO05D002917 2.7e-81 306.6 328 50.6
PGR004G2132 Punica granatum HOM05D002585 ORTHO05D002917 3.6e-81 306.2 335 50.4
Hund20555 Selenicereus undatus HOM05D002585 ORTHO05D002917 7.9e-81 305.1 326 51.5
Psat6g074480 Pisum sativum HOM05D002585 ORTHO05D002917 1.4e-80 304.3 327 50.8
A09p46170 Brassica napus HOM05D002585 ORTHO05D002917 1.8e-80 303.9 325 51.4
COL.COLO4_26904 Corchorus olitorius HOM05D002585 ORTHO05D002917 1.8e-80 303.9 322 51.2
MBI17_g25733_MAGBIO Magnolia biondii HOM05D002585 ORTHO05D002917 3.0e-80 303.1 317 53.9
BcaC07g39674 Brassica carinata HOM05D002585 ORTHO05D002917 3.9e-80 302.8 325 50.8
C08p28400 Brassica napus HOM05D002585 ORTHO05D002917 3.9e-80 302.8 325 50.8
BolC8t50450H Brassica oleracea HOM05D002585 ORTHO05D002917 3.9e-80 302.8 325 50.8
TPR.G21013 Trifolium pratense HOM05D002585 ORTHO05D002917 3.9e-80 302.8 335 49.6
Sp5g09150 Schrenkiella parvula HOM05D002585 ORTHO05D002917 5.1e-80 302.4 325 50.8
AT3G53180 Arabidopsis thaliana HOM05D002585 ORTHO05D002917 6.7e-80 302.0 327 50.2
ClCG04G009500 Citrullus lanatus HOM05D002585 ORTHO05D002917 4.4e-79 299.3 302 53.3
unitig_8.g4719 Utricularia gibba HOM05D002585 ORTHO05D002917 5.7e-79 298.9 357 49.0
Actinidia28922 Actinidia chinensis HOM05D002585 ORTHO05D002917 1.7e-78 297.4 306 52.3
A07p21410 Brassica napus HOM05D002585 ORTHO05D002917 2.2e-78 297.0 327 50.2
Gorai.002G160800 Gossypium raimondii HOM05D002585 ORTHO05D002917 2.8e-78 296.6 344 49.7
Thhalv10010120m.g Eutrema salsugineum HOM05D002585 ORTHO05D002917 4.8e-78 295.8 325 49.2
BolC6t37286H Brassica oleracea HOM05D002585 ORTHO05D002917 8.2e-78 295.0 326 49.4
Lj5g0007956 Lotus japonicus HOM05D002585 ORTHO05D002917 1.1e-77 294.7 329 49.8
SalBow5G4367 Salvia bowleyana HOM05D002585 ORTHO05D002917 1.4e-77 294.3 340 47.4
PGSC0003DMG401009595 Solanum tuberosum HOM05D002585 ORTHO05D002917 1.4e-77 294.3 339 50.1
C06p21020 Brassica napus HOM05D002585 ORTHO05D002917 1.8e-77 293.9 327 49.5
BraA07t29828Z Brassica rapa HOM05D002585 ORTHO05D002917 7.0e-77 292.0 325 49.8
CANSAT35G1791 Cannabis sativa HOM05D002585 ORTHO05D002917 1.6e-76 290.8 323 50.2
HPP92_008392 Vanilla planifolia HOM05D002585 ORTHO05D002917 5.9e-76 288.9 325 48.3
Sed0020289 Sechium edule HOM05D002585 ORTHO05D002917 7.7e-76 288.5 372 44.4
EL10Ac7g16696 Beta vulgaris HOM05D002585 ORTHO05D002917 1.3e-75 287.7 325 49.5
Sed0022969 Sechium edule HOM05D002585 ORTHO05D002917 1.3e-75 287.7 337 47.8
VMungo0720G1363 Vigna mungo HOM05D002585 ORTHO05D002917 1.3e-75 287.7 318 50.0
BcaB01g00304 Brassica carinata HOM05D002585 ORTHO05D002917 6.5e-75 285.4 325 48.3
Manes.08G013700 Manihot esculenta HOM05D002585 ORTHO05D002917 1.5e-74 284.3 264 57.6
Os10g0456500 Oryza sativa ssp. japonica HOM05D002585 ORTHO05D002917 1.5e-74 284.3 326 47.9
Sopen01g019530 Solanum pennellii HOM05D002585 ORTHO05D002917 2.5e-74 283.5 320 50.0
Phvul.007G152300 Phaseolus vulgaris HOM05D002585 ORTHO05D002917 2.1e-73 280.4 318 48.7
Pp3c1_32960 Physcomitrium patens HOM05D002585 ORTHO05D002917 3.6e-73 279.6 334 47.0
Sed0005893 Sechium edule HOM05D002585 ORTHO05D002917 6.1e-73 278.9 338 46.7
Nitab4.5_0004314g0020 Nicotiana tabacum HOM05D002585 ORTHO05D002917 1.8e-72 277.3 183 79.2
Glyma.10G060100 Glycine max HOM05D002585 ORTHO05D002917 1.5e-71 274.2 321 47.4
Pp3c14_19260 Physcomitrium patens HOM05D002585 ORTHO05D002917 3.3e-71 273.1 357 44.5
Sed0005462 Sechium edule HOM05D002585 ORTHO05D002917 1.7e-70 270.8 337 45.7
Solyc01g056430.2 Solanum lycopersicum HOM05D002585 ORTHO05D002917 3.7e-70 269.6 346 45.1
Aqoxy195s007 Aquilegia oxysepala HOM05D002585 ORTHO05D002917 1.8e-69 267.3 258 53.9
Peaxi162Scf00780g01019 Petunia axillaris HOM05D002585 ORTHO05D002917 2.4e-69 266.9 183 73.2
Pp3c21_9940 Physcomitrium patens HOM05D002585 ORTHO05D002917 2.0e-68 263.8 329 43.2
SMO367G0811 Selaginella moellendorffii HOM05D002585 ORTHO05D002917 4.5e-68 262.7 333 45.6
BcaC08g44624 Brassica carinata HOM05D002585 ORTHO05D002917 3.8e-67 259.6 352 43.8
Sed0002653 Sechium edule HOM05D002585 ORTHO05D002917 3.2e-66 256.5 320 45.9
vmacro07324 Vaccinium macrocarpon HOM05D002585 ORTHO05D002917 8.0e-65 251.9 321 45.8
Pp3c22_1270 Physcomitrium patens HOM05D002585 ORTHO05D002917 2.3e-64 250.4 333 42.9
MELO3C024485.2 Cucumis melo HOM05D002585 ORTHO05D002917 1.2e-63 248.1 178 68.0
Gohir.A04G069800 Gossypium hirsutum HOM05D002585 ORTHO05D002917 1.2e-63 248.1 184 65.2
CBR_g37575 Chara braunii HOM05D002585 ORTHO05D002917 4.4e-63 246.1 316 45.9
Ah.15g091400 Amaranthus hybridus HOM05D002585 ORTHO05D002917 9.8e-63 245.0 334 42.8
Lalb_Chr21g0315141 Lupinus albus HOM05D002585 ORTHO05D002917 6.3e-62 242.3 183 65.6
Gohir.D01G129800 Gossypium hirsutum HOM05D002585 ORTHO05D002917 8.3e-62 241.9 350 44.3
Nitab4.5_0008230g0030 Nicotiana tabacum HOM05D002585 ORTHO05D002917 1.9e-58 230.7 156 75.6
Nitab4.5_0003945g0160 Nicotiana tabacum HOM05D002585 ORTHO05D002917 1.6e-57 227.6 145 76.6
CBR_g51531 Chara braunii HOM05D002585 ORTHO05D002917 5.2e-56 222.6 301 44.9
AUR62026959 Chenopodium quinoa HOM05D002585 ORTHO05D002917 1.3e-54 218.0 184 59.2
Sopen01g025510 Solanum pennellii HOM05D002585 ORTHO05D002917 6.3e-54 215.7 339 40.1
RcHm_v2.0_Chr6g0260941 Rosa chinensis HOM05D002585 ORTHO05D002917 3.5e-52 209.9 186 58.6
FAN02G4184 Fragaria x ananassa HOM05D002585 ORTHO05D002917 5.9e-52 209.1 326 40.2
PGSC0003DMG400019014 Solanum tuberosum HOM05D002585 ORTHO05D002917 7.7e-52 208.8 339 40.1
Mapoly0010s0006 Marchantia polymorpha HOM05D002585 ORTHO05D002917 1.7e-51 207.6 177 58.2
Peaxi162Scf00247g00105 Petunia axillaris HOM05D002585 ORTHO05D002917 6.6e-51 205.7 149 67.8
HanXRQChr05g0144541 Helianthus annuus HOM05D002585 ORTHO05D002917 2.1e-49 200.7 148 65.5
QL07p042139 Quercus lobata HOM05D002585 ORTHO05D002917 7.0e-45 185.7 302 40.1
AUR62041382 Chenopodium quinoa HOM05D002585 ORTHO05D002917 1.2e-41 174.9 332 35.5
CiPaw.09G003100 Carya illinoinensis HOM05D002585 ORTHO05D002917 2.3e-40 170.6 116 71.6
Haze_19443 Corylus avellana HOM05D002585 ORTHO05D002917 5.0e-35 152.9 104 72.1
Dinv35818 Davidia involucrata HOM05D002585 ORTHO05D002917 6.6e-35 152.5 116 64.7
Zm00001eb046790 Zea mays HOM05D002585 ORTHO05D002917 2.1e-33 147.5 112 65.2
Lalb_Chr02g0155471 Lupinus albus HOM05D002585 ORTHO05D002917 8.3e-30 135.6 103 64.1
SHI27837 Sapria himalayana HOM05D002585 ORTHO05D002917 2.4e-29 134.0 84 76.2
CAN.G541.45 Capsicum annuum HOM05D002585 ORTHO05D002917 1.2e-28 131.7 129 56.6
SHI27836 Sapria himalayana HOM05D002585 ORTHO05D002917 3.5e-28 130.2 239 34.7
Glyma.13G146751 Glycine max HOM05D002585 ORTHO05D002917 3.8e-22 110.2 83 62.7
Nitab4.5_0008230g0010 Nicotiana tabacum HOM05D002585 ORTHO05D002917 3.2e-21 107.1 90 57.8
Cfa022823 Carpinus fangiana HOM05D002585 ORTHO05D002917 5.4e-21 106.3 374 24.9
Peaxi162Scf00780g01013 Petunia axillaris HOM05D002585 ORTHO05D002917 2.1e-20 104.4 92 54.3
Solyc01g056390.1 Solanum lycopersicum HOM05D002585 ORTHO05D002917 3.9e-19 100.1 201 35.3
Lalb_Chr02g0155491 Lupinus albus HOM05D002585 ORTHO05D002917 2.5e-18 97.4 113 47.8
Solyc01g056400.1 Solanum lycopersicum HOM05D002585 ORTHO05D002917 7.3e-18 95.9 66 66.7
Peaxi162Scf00247g00111 Petunia axillaris HOM05D002585 ORTHO05D002917 2.1e-17 94.4 94 52.1
Lalb_Chr21g0315151 Lupinus albus HOM05D002585 ORTHO05D002917 1.8e-16 91.3 91 47.3
Nitab4.5_0003945g0140 Nicotiana tabacum HOM05D002585 ORTHO05D002917 2.4e-16 90.9 70 60.0
unitig_0.g678 Utricularia gibba HOM05D002585 ORTHO05D002917 8.9e-16 89.0 98 48.0
CARHR060240 Cardamine hirsuta HOM05D002585 ORTHO05D002917 6.4e-14 82.8 108 43.5
HanXRQChr05g0144531 Helianthus annuus HOM05D002585 ORTHO05D002917 3.0e-11 73.9 91 45.1


User provided reference genes

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