Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc06g009860.1 Solanum lycopersicum HOM05D003670 ORTHO05D020012 2.7e-41 171.4 78 100.0
Sopen02g023800 Solanum pennellii HOM05D003670 ORTHO05D004767 1.3e-14 82.8 45 82.2
Solyc02g078990.4 Solanum lycopersicum HOM05D003670 ORTHO05D004767 1.7e-14 82.4 45 80.0
HanXRQChr11g0335601 Helianthus annuus HOM05D003670 ORTHO05D004767 1.1e-13 79.7 46 73.9
Peaxi162Scf00006g00159 Petunia axillaris HOM05D003670 ORTHO05D004767 1.1e-13 79.7 75 53.3
CSS0006756 Camellia sinensis var. sinensis HOM05D003670 ORTHO05D004767 1.4e-13 79.3 75 53.3
CARHR072860 Cardamine hirsuta HOM05D003670 ORTHO05D004767 1.4e-13 79.3 74 52.7
Nitab4.5_0006241g0010 Nicotiana tabacum HOM05D003670 ORTHO05D004767 1.4e-13 79.3 46 71.7
Peaxi162Scf00452g00333 Petunia axillaris HOM05D003670 ORTHO05D004767 1.4e-13 79.3 46 73.9
Gohir.A13G123400 Gossypium hirsutum HOM05D003670 ORTHO05D004767 1.8e-13 79.0 75 52.0
Gorai.013G142500 Gossypium raimondii HOM05D003670 ORTHO05D004767 1.8e-13 79.0 75 52.0
Migut.H01671 Erythranthe guttata HOM05D003670 ORTHO05D004767 2.4e-13 78.6 75 52.0
Gohir.D13G127300 Gossypium hirsutum HOM05D003670 ORTHO05D004767 2.4e-13 78.6 75 52.0
Os12g0608600 Oryza sativa ssp. japonica HOM05D003670 ORTHO05D004767 2.4e-13 78.6 46 71.7
Aa31LG4G1790 Aethionema arabicum HOM05D003670 ORTHO05D004767 3.2e-13 78.2 74 54.1
Oeu002796.1 Olea europaea HOM05D003670 ORTHO05D004767 3.2e-13 78.2 46 71.7
Oeu043724.2 Olea europaea HOM05D003670 ORTHO05D004767 3.2e-13 78.2 58 63.8
Rhsim06G0242300 Rhododendron simsii HOM05D003670 ORTHO05D004767 3.2e-13 78.2 75 53.3
DCAR_019919 Daucus carota HOM05D003670 ORTHO05D004767 4.1e-13 77.8 46 71.7
Solyc07g066580.3 Solanum lycopersicum HOM05D003670 ORTHO05D004767 4.1e-13 77.8 44 75.0
Sopen07g034740 Solanum pennellii HOM05D003670 ORTHO05D004767 4.1e-13 77.8 44 75.0
PGSC0003DMG400022232 Solanum tuberosum HOM05D003670 ORTHO05D004767 4.1e-13 77.8 44 75.0
unitig_8.g4750 Utricularia gibba HOM05D003670 ORTHO05D004767 4.1e-13 77.8 45 71.1
Nitab4.5_0005765g0040 Nicotiana tabacum HOM05D003670 ORTHO05D004767 7.0e-13 77.0 46 71.7
ATR0763G120 Amborella trichopoda HOM05D003670 ORTHO05D004767 9.2e-13 76.6 44 70.5
BcaB02g07206 Brassica carinata HOM05D003670 ORTHO05D004767 9.2e-13 76.6 68 55.9
BcaB05g25180 Brassica carinata HOM05D003670 ORTHO05D004767 9.2e-13 76.6 45 73.3
BcaC08g45368 Brassica carinata HOM05D003670 ORTHO05D004767 9.2e-13 76.6 68 55.9
A07p27230 Brassica napus HOM05D003670 ORTHO05D004767 9.2e-13 76.6 68 55.9
C06p30000 Brassica napus HOM05D003670 ORTHO05D004767 9.2e-13 76.6 68 55.9
BolC6t38160H Brassica oleracea HOM05D003670 ORTHO05D004767 9.2e-13 76.6 68 55.9
BraA07t30367Z Brassica rapa HOM05D003670 ORTHO05D004767 9.2e-13 76.6 68 55.9
Hma1.2p1_0151F.1_g067325 Hydrangea macrophylla HOM05D003670 ORTHO05D004767 9.2e-13 76.6 75 52.0
Sp5g34280 Schrenkiella parvula HOM05D003670 ORTHO05D004767 9.2e-13 76.6 74 52.7
AT1G79230 Arabidopsis thaliana HOM05D003670 ORTHO05D004767 1.2e-12 76.3 74 51.4
A07p44350 Brassica napus HOM05D003670 ORTHO05D004767 1.2e-12 76.3 74 51.4
BraA07t31943Z Brassica rapa HOM05D003670 ORTHO05D004767 1.2e-12 76.3 74 51.4
Carub.0001s1620 Capsella rubella HOM05D003670 ORTHO05D004767 1.2e-12 76.3 74 51.4
Carub.0002s2610 Capsella rubella HOM05D003670 ORTHO05D004767 1.2e-12 76.3 74 52.7
Medtr2g067080 Medicago truncatula HOM05D003670 ORTHO05D004767 1.2e-12 76.3 46 69.6
Potri.005G095300 Populus trichocarpa HOM05D003670 ORTHO05D004767 1.2e-12 76.3 74 52.7
THA.LOC104812362 Tarenaya hassleriana HOM05D003670 ORTHO05D004767 1.2e-12 76.3 75 49.3
TPR.G33813 Trifolium pratense HOM05D003670 ORTHO05D004767 1.2e-12 76.3 46 69.6
CAN.G943.51 Capsicum annuum HOM05D003670 ORTHO05D004767 1.6e-12 75.9 44 72.7
ECA236G3562 Erigeron canadensis HOM05D003670 ORTHO05D004767 1.6e-12 75.9 47 66.0
Thhalv10018699m.g Eutrema salsugineum HOM05D003670 ORTHO05D004767 1.6e-12 75.9 74 51.4
Lsat_1_v5_gn_7_110680 Lactuca sativa HOM05D003670 ORTHO05D004767 1.6e-12 75.9 46 69.6
BcaC05g25571 Brassica carinata HOM05D003670 ORTHO05D004767 2.0e-12 75.5 45 68.9
C05p14650 Brassica napus HOM05D003670 ORTHO05D004767 2.0e-12 75.5 45 68.9
BolC5t30186H Brassica oleracea HOM05D003670 ORTHO05D004767 2.0e-12 75.5 45 68.9
Manes.06G175700 Manihot esculenta HOM05D003670 ORTHO05D004767 2.0e-12 75.5 75 52.0
Nitab4.5_0000029g0340 Nicotiana tabacum HOM05D003670 ORTHO05D004767 2.0e-12 75.5 44 70.5
AL2G39700 Arabidopsis lyrata HOM05D003670 ORTHO05D004767 2.7e-12 75.1 45 68.9
MSTRG.14566 Avicennia marina HOM05D003670 ORTHO05D004767 2.7e-12 75.1 46 69.6
BcaB02g06624 Brassica carinata HOM05D003670 ORTHO05D004767 2.7e-12 75.1 74 51.4
A02p22680 Brassica napus HOM05D003670 ORTHO05D004767 2.7e-12 75.1 51 66.7
Ca_03600_v3 Cicer arietinum L. HOM05D003670 ORTHO05D004767 2.7e-12 75.1 46 67.4
Thhalv10007910m.g Eutrema salsugineum HOM05D003670 ORTHO05D004767 2.7e-12 75.1 45 68.9
MD05G1228000 Malus domestica HOM05D003670 ORTHO05D004767 2.7e-12 75.1 75 50.7
MD05G1228700 Malus domestica HOM05D003670 ORTHO05D004767 2.7e-12 75.1 75 50.7
CARHR016930 Cardamine hirsuta HOM05D003670 ORTHO05D004767 3.5e-12 74.7 45 68.9
PSO541G1524 Papaver somniferum HOM05D003670 ORTHO05D004767 3.5e-12 74.7 46 69.6
PSO675G6901 Papaver somniferum HOM05D003670 ORTHO05D004767 3.5e-12 74.7 46 69.6
THA.LOC104813608 Tarenaya hassleriana HOM05D003670 ORTHO05D004767 3.5e-12 74.7 46 65.2
unitig_578.g16333 Utricularia gibba HOM05D003670 ORTHO05D004767 3.5e-12 74.7 45 68.9
A06p12380 Brassica napus HOM05D003670 ORTHO05D004767 4.6e-12 74.3 45 68.9
AUR62037644 Chenopodium quinoa HOM05D003670 ORTHO05D004767 4.6e-12 74.3 73 50.7
AUR62039184 Chenopodium quinoa HOM05D003670 ORTHO05D004767 4.6e-12 74.3 73 50.7
Duzib187G0441 Durio zibethinus HOM05D003670 ORTHO05D004767 4.6e-12 74.3 73 49.3
QL04p088520 Quercus lobata HOM05D003670 ORTHO05D004767 4.6e-12 74.3 75 49.3
Zm00001eb031400 Zea mays HOM05D003670 ORTHO05D004767 4.6e-12 74.3 46 65.2
Aa31LG7G1000 Aethionema arabicum HOM05D003670 ORTHO05D004767 5.9e-12 73.9 45 68.9
ClCG05G009800 Citrullus lanatus HOM05D003670 ORTHO05D000003 5.9e-12 73.9 46 65.2
CsaV3_3G018980 Cucumis sativus L. HOM05D003670 ORTHO05D004767 5.9e-12 73.9 75 49.3
MD10G1208500 Malus domestica HOM05D003670 ORTHO05D004767 5.9e-12 73.9 46 67.4
CDE06G0877 Ceratophyllum demersum HOM05D003670 ORTHO05D004767 7.8e-12 73.6 44 68.2
Cc05_g16310 Coffea canephora HOM05D003670 ORTHO05D004767 7.8e-12 73.6 45 68.9
COL.COLO4_32264 Corchorus olitorius HOM05D003670 ORTHO05D004767 7.8e-12 73.6 75 50.7
MBI02_g18168_MAGBIO Magnolia biondii HOM05D003670 ORTHO05D004767 7.8e-12 73.6 46 67.4
Nn7g37780 Nelumbo nucifera HOM05D003670 ORTHO05D004767 7.8e-12 73.6 46 67.4
Phvul.005G050400 Phaseolus vulgaris HOM05D003670 ORTHO05D004767 7.8e-12 73.6 46 67.4
Psat1g013760 Pisum sativum HOM05D003670 ORTHO05D004767 7.8e-12 73.6 46 65.2
SEGI_21826 Sequoiadendron giganteum HOM05D003670 ORTHO05D004767 7.8e-12 73.6 46 67.4
EL10Ac2g03264 Beta vulgaris HOM05D003670 ORTHO05D004767 1.0e-11 73.2 73 49.3
SGA_v2.0_scaffold186G40197 Striga asiatica HOM05D003670 ORTHO05D004767 1.0e-11 73.2 76 47.4
HPP92_013192 Vanilla planifolia HOM05D003670 ORTHO05D004767 1.0e-11 73.2 46 63.0
HPP92_013209 Vanilla planifolia HOM05D003670 ORTHO05D004767 1.0e-11 73.2 46 63.0
GSVIVG01036786001 Vitis vinifera HOM05D003670 ORTHO05D004767 1.0e-11 73.2 46 67.4
CANSAT80G2697 Cannabis sativa HOM05D003670 ORTHO05D004767 1.3e-11 72.8 46 65.2
Oeu034061.1 Olea europaea HOM05D003670 ORTHO05D020012 1.3e-11 72.8 46 67.4
Sp1g14610 Schrenkiella parvula HOM05D003670 ORTHO05D004767 1.3e-11 72.8 75 49.3
TWI38G1711 Tripterygium wilfordii HOM05D003670 ORTHO05D004767 1.3e-11 72.8 75 50.7
TAR583G0001 Trochodendron aralioides HOM05D003670 ORTHO05D004767 1.3e-11 72.8 44 65.9
BraA06t24401Z Brassica rapa HOM05D003670 ORTHO05D004767 1.7e-11 72.4 45 66.7
Lalb_Chr25g0284691 Lupinus albus HOM05D003670 ORTHO05D004767 1.7e-11 72.4 46 65.2
RcHm_v2.0_Chr5g0024611 Rosa chinensis HOM05D003670 ORTHO05D004767 1.7e-11 72.4 75 50.7
vmacro11699 Vaccinium macrocarpon HOM05D003670 ORTHO05D004767 1.7e-11 72.4 44 72.7
Ah.10g033690 Amaranthus hybridus HOM05D003670 ORTHO05D004767 2.3e-11 72.0 44 68.2
Ciclev10005196m.g Citrus clementina HOM05D003670 ORTHO05D004767 2.3e-11 72.0 75 49.3
Glyma.08G167100 Glycine max HOM05D003670 ORTHO05D004767 2.3e-11 72.0 46 65.2
Thecc.07G180400 Theobroma cacao HOM05D003670 ORTHO05D004767 2.3e-11 72.0 75 49.3
TWI39G0091 Tripterygium wilfordii HOM05D003670 ORTHO05D004767 2.3e-11 72.0 75 50.7
Lj3g0014239 Lotus japonicus HOM05D003670 ORTHO05D004767 2.9e-11 71.6 46 65.2
AT1G16460 Arabidopsis thaliana HOM05D003670 ORTHO05D004767 3.9e-11 71.2 74 48.6
Os02g0167100 Oryza sativa ssp. japonica HOM05D003670 ORTHO05D004767 3.9e-11 71.2 45 68.9
Hund20101 Selenicereus undatus HOM05D003670 ORTHO05D004767 3.9e-11 71.2 44 65.9
CiPaw.11G061900 Carya illinoinensis HOM05D003670 ORTHO05D004767 5.0e-11 70.9 46 65.2
Manes.14G010300 Manihot esculenta HOM05D003670 ORTHO05D004767 5.0e-11 70.9 46 65.2
PGR031G1669 Punica granatum HOM05D003670 ORTHO05D004767 5.0e-11 70.9 46 65.2
Aqoxy1G01484 Aquilegia oxysepala HOM05D003670 ORTHO05D004767 6.6e-11 70.5 46 65.2
AL1G28600 Arabidopsis lyrata HOM05D003670 ORTHO05D004767 6.6e-11 70.5 45 66.7
FvH4_3g14990 Fragaria vesca HOM05D003670 ORTHO05D004767 6.6e-11 70.5 45 66.7
FAN11G2825 Fragaria x ananassa HOM05D003670 ORTHO05D004767 6.6e-11 70.5 45 66.7
FAN16G2550 Fragaria x ananassa HOM05D003670 ORTHO05D004767 6.6e-11 70.5 45 66.7
Potri.007G069300 Populus trichocarpa HOM05D003670 ORTHO05D004767 6.6e-11 70.5 46 65.2
Prupe.4G134300 Prunus persica HOM05D003670 ORTHO05D004767 6.6e-11 70.5 75 49.3
Zm00001eb207410 Zea mays HOM05D003670 ORTHO05D004767 8.6e-11 70.1 49 61.2
FAN21G1395 Fragaria x ananassa HOM05D003670 ORTHO05D004767 1.1e-10 69.7 45 66.7
FAN25G1710 Fragaria x ananassa HOM05D003670 ORTHO05D004767 1.1e-10 69.7 45 66.7
DCAR_016837 Daucus carota HOM05D003670 ORTHO05D004767 1.5e-10 69.3 45 66.7
VMungo1080G1660 Vigna mungo HOM05D003670 ORTHO05D004767 1.5e-10 69.3 46 65.2
MSTRG.7076 Avicennia marina HOM05D003670 ORTHO05D004767 1.9e-10 68.9 44 63.6
Duzib213G1009 Durio zibethinus HOM05D003670 ORTHO05D004767 1.9e-10 68.9 75 48.0
Eucgr.F04458 Eucalyptus grandis HOM05D003670 ORTHO05D004767 1.9e-10 68.9 43 67.4
Sabra05G0078800 Salix brachista HOM05D003670 ORTHO05D004767 1.9e-10 68.9 45 62.2
Sed0012107 Sechium edule HOM05D003670 ORTHO05D004767 1.9e-10 68.9 44 65.9
Cpa.g.sc34.16 Carica papaya HOM05D003670 ORTHO05D004767 2.5e-10 68.6 44 63.6
Sabra07G0056700 Salix brachista HOM05D003670 ORTHO05D004767 2.5e-10 68.6 45 66.7
BcaC03g15876 Brassica carinata HOM05D003670 ORTHO05D020012 3.3e-10 68.2 36 80.6
Mapoly0058s0078 Marchantia polymorpha HOM05D003670 ORTHO05D004767 3.3e-10 68.2 43 67.4
Pp3c9_17670 Physcomitrium patens HOM05D003670 ORTHO05D004767 3.3e-10 68.2 45 64.4
CBR_g17038 Chara braunii HOM05D003670 ORTHO05D004767 7.3e-10 67.0 67 44.8
C06p40160 Brassica napus HOM05D003670 ORTHO05D020012 1.6e-09 65.9 45 68.9
BolC6t39098H Brassica oleracea HOM05D003670 ORTHO05D020012 1.6e-09 65.9 45 68.9
AagrBONN_evm.TU.Sc2ySwM_344.5346 Anthoceros agrestis HOM05D003670 ORTHO05D004767 1.0e-08 63.2 43 62.8
SMO119G0061 Selaginella moellendorffii HOM05D003670 ORTHO05D004767 2.3e-08 62.0 43 58.1
PRCOL_00006295 Prasinoderma coloniale HOM05D003670 ORTHO05D004767 8.9e-08 60.1 39 61.5
MCO09G588 Micromonas commoda HOM05D003670 ORTHO05D004767 8.3e-06 53.5 42 61.9


User provided reference genes

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