Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc06g009850.3 Solanum lycopersicum HOM05D003670 ORTHO05D014971 7.3e-89 330.5 162 100.0
Solyc02g078990.4 Solanum lycopersicum HOM05D003670 ORTHO05D004767 1.1e-31 140.6 116 68.1
Sopen02g023800 Solanum pennellii HOM05D003670 ORTHO05D004767 1.1e-31 140.6 116 68.1
Nitab4.5_0005765g0040 Nicotiana tabacum HOM05D003670 ORTHO05D004767 2.9e-29 132.5 117 64.1
Nitab4.5_0000388g0140 Nicotiana tabacum HOM05D003670 ORTHO05D004767 8.5e-29 131.0 117 63.2
Peaxi162Scf00452g00333 Petunia axillaris HOM05D003670 ORTHO05D004767 4.0e-26 122.1 116 57.8
unitig_8.g4750 Utricularia gibba HOM05D003670 ORTHO05D004767 1.1e-25 120.6 112 55.4
Hma1.2p1_0151F.1_g067325 Hydrangea macrophylla HOM05D003670 ORTHO05D004767 2.6e-25 119.4 116 57.8
Peaxi162Scf00006g00159 Petunia axillaris HOM05D003670 ORTHO05D004767 2.6e-25 119.4 116 59.5
Dinv19592 Davidia involucrata HOM05D003670 ORTHO05D004767 5.7e-25 118.2 196 40.3
ECA236G3562 Erigeron canadensis HOM05D003670 ORTHO05D004767 7.5e-25 117.9 116 56.9
CiPaw.11G061900 Carya illinoinensis HOM05D003670 ORTHO05D004767 9.7e-25 117.5 116 55.2
GSVIVG01036786001 Vitis vinifera HOM05D003670 ORTHO05D004767 9.7e-25 117.5 116 57.8
Nitab4.5_0006241g0010 Nicotiana tabacum HOM05D003670 ORTHO05D004767 3.7e-24 115.5 116 54.3
Potri.005G095300 Populus trichocarpa HOM05D003670 ORTHO05D004767 3.7e-24 115.5 116 56.0
CAN.G943.51 Capsicum annuum HOM05D003670 ORTHO05D004767 4.8e-24 115.2 116 55.2
Manes.06G175700 Manihot esculenta HOM05D003670 ORTHO05D004767 4.8e-24 115.2 116 55.2
Nitab4.5_0000029g0340 Nicotiana tabacum HOM05D003670 ORTHO05D004767 4.8e-24 115.2 116 55.2
Actinidia12766 Actinidia chinensis HOM05D003670 ORTHO05D004767 1.1e-23 114.0 114 56.1
CDE02G0962 Ceratophyllum demersum HOM05D003670 ORTHO05D004767 1.1e-23 114.0 89 62.9
Migut.H01671 Erythranthe guttata HOM05D003670 ORTHO05D004767 1.1e-23 114.0 123 52.0
Lsat_1_v5_gn_7_110680 Lactuca sativa HOM05D003670 ORTHO05D004767 1.1e-23 114.0 119 53.8
Prupe.4G134300 Prunus persica HOM05D003670 ORTHO05D004767 1.4e-23 113.6 118 52.5
HanXRQChr11g0335601 Helianthus annuus HOM05D003670 ORTHO05D004767 1.8e-23 113.2 116 55.2
MD10G1208500 Malus domestica HOM05D003670 ORTHO05D004767 2.4e-23 112.8 116 53.4
QL04p088520 Quercus lobata HOM05D003670 ORTHO05D004767 2.4e-23 112.8 116 54.3
Lj3g0014239 Lotus japonicus HOM05D003670 ORTHO05D004767 3.1e-23 112.5 116 53.4
MD05G1228000 Malus domestica HOM05D003670 ORTHO05D004767 4.1e-23 112.1 116 53.4
Manes.14G010300 Manihot esculenta HOM05D003670 ORTHO05D004767 4.1e-23 112.1 120 53.3
RcHm_v2.0_Chr5g0024611 Rosa chinensis HOM05D003670 ORTHO05D004767 4.1e-23 112.1 118 55.1
Sp5g34280 Schrenkiella parvula HOM05D003670 ORTHO05D004767 4.1e-23 112.1 120 51.7
PGSC0003DMG400022232 Solanum tuberosum HOM05D003670 ORTHO05D004767 4.1e-23 112.1 117 54.7
THA.LOC104812362 Tarenaya hassleriana HOM05D003670 ORTHO05D004767 5.3e-23 111.7 120 53.3
Cfa022976 Carpinus fangiana HOM05D003670 ORTHO05D004767 9.1e-23 110.9 116 52.6
CANSAT80G2697 Cannabis sativa HOM05D003670 ORTHO05D004767 1.2e-22 110.5 118 53.4
Sabra07G0056700 Salix brachista HOM05D003670 ORTHO05D004767 1.2e-22 110.5 115 53.9
CARHR016930 Cardamine hirsuta HOM05D003670 ORTHO05D004767 1.6e-22 110.2 116 53.4
BcaB02g07206 Brassica carinata HOM05D003670 ORTHO05D004767 2.0e-22 109.8 122 50.0
CSS0006756 Camellia sinensis var. sinensis HOM05D003670 ORTHO05D004767 2.0e-22 109.8 114 55.3
FvH4_3g14990 Fragaria vesca HOM05D003670 ORTHO05D004767 2.0e-22 109.8 116 52.6
FAN11G2825 Fragaria x ananassa HOM05D003670 ORTHO05D004767 2.0e-22 109.8 116 52.6
FAN25G1710 Fragaria x ananassa HOM05D003670 ORTHO05D004767 2.0e-22 109.8 116 52.6
Glyma.08G167100 Glycine max HOM05D003670 ORTHO05D004767 2.0e-22 109.8 116 51.7
CARHR072860 Cardamine hirsuta HOM05D003670 ORTHO05D004767 2.7e-22 109.4 116 54.3
Ciclev10005196m.g Citrus clementina HOM05D003670 ORTHO05D004767 2.7e-22 109.4 116 51.7
Cc05_g16310 Coffea canephora HOM05D003670 ORTHO05D004767 2.7e-22 109.4 117 52.1
SGA_v2.0_scaffold49G18190 Striga asiatica HOM05D003670 ORTHO05D004767 2.7e-22 109.4 198 36.4
Glyma.15G260300 Glycine max HOM05D003670 ORTHO05D004767 3.5e-22 109.0 116 51.7
Thhalv10018699m.g Eutrema salsugineum HOM05D003670 ORTHO05D004767 4.5e-22 108.6 120 50.8
Potri.007G069300 Populus trichocarpa HOM05D003670 ORTHO05D004767 4.5e-22 108.6 111 54.1
PGR031G1669 Punica granatum HOM05D003670 ORTHO05D004767 5.9e-22 108.2 116 51.7
AL2G39700 Arabidopsis lyrata HOM05D003670 ORTHO05D004767 7.7e-22 107.8 120 51.7
BraA07t31943Z Brassica rapa HOM05D003670 ORTHO05D004767 7.7e-22 107.8 120 49.2
Carub.0002s2610 Capsella rubella HOM05D003670 ORTHO05D004767 7.7e-22 107.8 120 51.7
Gohir.A13G123400 Gossypium hirsutum HOM05D003670 ORTHO05D004767 7.7e-22 107.8 116 51.7
Psat1g013760 Pisum sativum HOM05D003670 ORTHO05D004767 7.7e-22 107.8 116 52.6
TWI38G1711 Tripterygium wilfordii HOM05D003670 ORTHO05D004767 7.7e-22 107.8 116 52.6
TWI39G0091 Tripterygium wilfordii HOM05D003670 ORTHO05D004767 7.7e-22 107.8 116 53.4
VMungo1080G1660 Vigna mungo HOM05D003670 ORTHO05D004767 7.7e-22 107.8 116 51.7
Ah.10g033690 Amaranthus hybridus HOM05D003670 ORTHO05D004767 1.0e-21 107.5 116 54.3
FAN21G1395 Fragaria x ananassa HOM05D003670 ORTHO05D004767 1.0e-21 107.5 116 51.7
Gohir.D13G127300 Gossypium hirsutum HOM05D003670 ORTHO05D004767 1.0e-21 107.5 116 51.7
Nn7g37780 Nelumbo nucifera HOM05D003670 ORTHO05D004767 1.0e-21 107.5 120 51.7
TAR583G0001 Trochodendron aralioides HOM05D003670 ORTHO05D004767 1.0e-21 107.5 119 50.4
unitig_578.g16333 Utricularia gibba HOM05D003670 ORTHO05D004767 1.0e-21 107.5 121 49.6
AT1G79230 Arabidopsis thaliana HOM05D003670 ORTHO05D004767 1.3e-21 107.1 120 50.8
Ca_03600_v3 Cicer arietinum L. HOM05D003670 ORTHO05D004767 1.3e-21 107.1 116 51.7
COL.COLO4_32264 Corchorus olitorius HOM05D003670 ORTHO05D004767 1.3e-21 107.1 116 51.7
Thhalv10007910m.g Eutrema salsugineum HOM05D003670 ORTHO05D004767 1.3e-21 107.1 116 51.7
Gorai.013G142500 Gossypium raimondii HOM05D003670 ORTHO05D004767 1.3e-21 107.1 117 51.3
Rhsim06G0242300 Rhododendron simsii HOM05D003670 ORTHO05D004767 1.3e-21 107.1 113 53.1
MSTRG.14566 Avicennia marina HOM05D003670 ORTHO05D004767 1.7e-21 106.7 116 50.9
BcaC08g45368 Brassica carinata HOM05D003670 ORTHO05D004767 1.7e-21 106.7 119 52.1
C06p30000 Brassica napus HOM05D003670 ORTHO05D004767 1.7e-21 106.7 119 52.1
BolC6t38160H Brassica oleracea HOM05D003670 ORTHO05D004767 1.7e-21 106.7 119 52.1
Lalb_Chr25g0284691 Lupinus albus HOM05D003670 ORTHO05D004767 1.7e-21 106.7 117 50.4
Oeu002796.1 Olea europaea HOM05D003670 ORTHO05D004767 1.7e-21 106.7 116 51.7
Oeu043724.2 Olea europaea HOM05D003670 ORTHO05D004767 1.7e-21 106.7 116 53.4
Phvul.005G050400 Phaseolus vulgaris HOM05D003670 ORTHO05D004767 1.7e-21 106.7 116 51.7
ATR0763G120 Amborella trichopoda HOM05D003670 ORTHO05D004767 2.2e-21 106.3 110 53.6
A07p27230 Brassica napus HOM05D003670 ORTHO05D004767 2.2e-21 106.3 119 51.3
A07p44350 Brassica napus HOM05D003670 ORTHO05D004767 2.2e-21 106.3 120 48.3
BraA07t30367Z Brassica rapa HOM05D003670 ORTHO05D004767 2.2e-21 106.3 119 51.3
Hund20101 Selenicereus undatus HOM05D003670 ORTHO05D004767 2.2e-21 106.3 114 54.4
TPR.G33813 Trifolium pratense HOM05D003670 ORTHO05D004767 2.2e-21 106.3 116 50.9
Sc06g0002800 Simmondsia chinensis HOM05D003670 ORTHO05D004767 2.9e-21 105.9 115 52.2
Lj2A15G76 Lonicera japonica HOM05D003670 ORTHO05D004767 3.8e-21 105.5 193 36.3
Aa31LG4G1790 Aethionema arabicum HOM05D003670 ORTHO05D004767 5.0e-21 105.1 121 52.9
DCAR_019919 Daucus carota HOM05D003670 ORTHO05D004767 5.0e-21 105.1 116 51.7
Duzib187G0441 Durio zibethinus HOM05D003670 ORTHO05D004767 5.0e-21 105.1 116 50.0
ClCG05G009800 Citrullus lanatus HOM05D003670 ORTHO05D000003 6.5e-21 104.8 116 50.0
Solyc07g066580.3 Solanum lycopersicum HOM05D003670 ORTHO05D004767 6.5e-21 104.8 117 52.1
Sopen07g034740 Solanum pennellii HOM05D003670 ORTHO05D004767 6.5e-21 104.8 117 52.1
Carub.0001s1620 Capsella rubella HOM05D003670 ORTHO05D004767 8.5e-21 104.4 116 51.7
CsaV3_3G018980 Cucumis sativus L. HOM05D003670 ORTHO05D004767 8.5e-21 104.4 116 49.1
AUR62037644 Chenopodium quinoa HOM05D003670 ORTHO05D004767 1.1e-20 104.0 116 51.7
Sabra05G0078800 Salix brachista HOM05D003670 ORTHO05D004767 1.1e-20 104.0 122 51.6
Eucgr.F04458 Eucalyptus grandis HOM05D003670 ORTHO05D004767 1.5e-20 103.6 116 49.1
BcaB02g06624 Brassica carinata HOM05D003670 ORTHO05D004767 1.9e-20 103.2 116 50.0
BcaC05g25571 Brassica carinata HOM05D003670 ORTHO05D004767 1.9e-20 103.2 117 52.1
RcHm_v2.0_Chr5g0024731 Rosa chinensis HOM05D003670 ORTHO05D004767 1.9e-20 103.2 118 52.5
Sp1g14610 Schrenkiella parvula HOM05D003670 ORTHO05D004767 1.9e-20 103.2 118 50.8
C05p14650 Brassica napus HOM05D003670 ORTHO05D004767 2.5e-20 102.8 117 51.3
BolC5t30186H Brassica oleracea HOM05D003670 ORTHO05D004767 2.5e-20 102.8 117 51.3
THA.LOC104813608 Tarenaya hassleriana HOM05D003670 ORTHO05D004767 2.5e-20 102.8 121 49.6
AUR62039184 Chenopodium quinoa HOM05D003670 ORTHO05D004767 3.2e-20 102.4 116 50.9
MELO3C019489.2 Cucumis melo HOM05D003670 ORTHO05D004767 3.2e-20 102.4 116 48.3
PSO675G6901 Papaver somniferum HOM05D003670 ORTHO05D004767 3.2e-20 102.4 106 51.9
vmacro11699 Vaccinium macrocarpon HOM05D003670 ORTHO05D004767 3.2e-20 102.4 114 50.0
AL1G28600 Arabidopsis lyrata HOM05D003670 ORTHO05D004767 4.2e-20 102.1 116 51.7
Medtr2g067080 Medicago truncatula HOM05D003670 ORTHO05D004767 5.5e-20 101.7 116 50.0
Thecc.07G180400 Theobroma cacao HOM05D003670 ORTHO05D004767 5.5e-20 101.7 117 48.7
BcaB05g25180 Brassica carinata HOM05D003670 ORTHO05D004767 7.2e-20 101.3 117 53.0
A06p12380 Brassica napus HOM05D003670 ORTHO05D004767 9.4e-20 100.9 117 51.3
MBI02_g18168_MAGBIO Magnolia biondii HOM05D003670 ORTHO05D004767 9.4e-20 100.9 106 51.9
BraA06t24401Z Brassica rapa HOM05D003670 ORTHO05D004767 1.2e-19 100.5 124 48.4
Aa31LG7G1000 Aethionema arabicum HOM05D003670 ORTHO05D004767 1.6e-19 100.1 116 50.0
Aqoxy1G01484 Aquilegia oxysepala HOM05D003670 ORTHO05D004767 1.6e-19 100.1 116 50.9
MSTRG.7076 Avicennia marina HOM05D003670 ORTHO05D004767 1.6e-19 100.1 116 50.9
EL10Ac2g03264 Beta vulgaris HOM05D003670 ORTHO05D004767 1.6e-19 100.1 112 50.0
Aqoxy1G03000 Aquilegia oxysepala HOM05D003670 ORTHO05D004767 3.6e-19 99.0 116 50.0
CDE06G2006 Ceratophyllum demersum HOM05D003670 ORTHO05D004767 8.0e-19 97.8 121 46.3
PSO541G1524 Papaver somniferum HOM05D003670 ORTHO05D004767 1.0e-18 97.4 115 47.0
Sed0012107 Sechium edule HOM05D003670 ORTHO05D004767 1.8e-18 96.7 116 47.4
arahy.Tifrunner.gnm1.ann1.36F1KB Arachis hypogaea HOM05D003670 ORTHO05D004767 2.3e-18 96.3 104 51.9
arahy.Tifrunner.gnm1.ann1.YZ7E83 Arachis hypogaea HOM05D003670 ORTHO05D004767 2.3e-18 96.3 104 51.9
SGA_v2.0_scaffold186G40197 Striga asiatica HOM05D003670 ORTHO05D004767 6.8e-18 94.7 101 49.5
Rhsim05G0210500 Rhododendron simsii HOM05D003670 ORTHO05D004767 8.8e-18 94.4 121 47.1
Os12g0608600 Oryza sativa ssp. japonica HOM05D003670 ORTHO05D004767 2.6e-17 92.8 114 46.5
Zm00001eb031400 Zea mays HOM05D003670 ORTHO05D004767 3.4e-17 92.4 135 42.2
HPP92_013192 Vanilla planifolia HOM05D003670 ORTHO05D004767 7.5e-17 91.3 116 50.0
HPP92_013209 Vanilla planifolia HOM05D003670 ORTHO05D004767 7.5e-17 91.3 96 53.1
C06p53140 Brassica napus HOM05D003670 ORTHO05D004767 1.3e-16 90.5 96 52.1
BolC6t40330H Brassica oleracea HOM05D003670 ORTHO05D004767 1.3e-16 90.5 96 52.1
AT1G16460 Arabidopsis thaliana HOM05D003670 ORTHO05D004767 6.3e-16 88.2 110 48.2
Zm00001eb207410 Zea mays HOM05D003670 ORTHO05D004767 5.4e-15 85.1 97 49.5
Haze_07818 Corylus avellana HOM05D003670 ORTHO05D004767 1.2e-14 84.0 196 34.2
SEGI_21826 Sequoiadendron giganteum HOM05D003670 ORTHO05D004767 3.5e-14 82.4 130 40.8
DCAR_016837 Daucus carota HOM05D003670 ORTHO05D004767 5.9e-14 81.6 105 48.6
Lsat_1_v5_gn_4_93521 Lactuca sativa HOM05D003670 ORTHO05D004767 7.7e-14 81.3 96 53.1
Os02g0167100 Oryza sativa ssp. japonica HOM05D003670 ORTHO05D004767 1.3e-13 80.5 97 48.5
Cpa.g.sc34.17 Carica papaya HOM05D003670 ORTHO05D004767 5.0e-13 78.6 97 49.5
BcaC08g47490 Brassica carinata HOM05D003670 ORTHO05D004767 8.5e-13 77.8 123 40.7
MD05G1228600 Malus domestica HOM05D003670 ORTHO05D004767 8.5e-13 77.8 97 48.5
Sopen06g004510 Solanum pennellii HOM05D003670 ORTHO05D014971 1.5e-12 77.0 47 83.0
QL04p088965 Quercus lobata HOM05D003670 ORTHO05D004767 2.5e-12 76.3 60 63.3
Mapoly0058s0078 Marchantia polymorpha HOM05D003670 ORTHO05D004767 9.5e-12 74.3 123 36.6
AagrBONN_evm.TU.Sc2ySwM_344.5346 Anthoceros agrestis HOM05D003670 ORTHO05D004767 4.7e-11 72.0 117 39.3
Duzib213G1009 Durio zibethinus HOM05D003670 ORTHO05D004767 1.0e-10 70.9 97 44.3
SMO119G0061 Selaginella moellendorffii HOM05D003670 ORTHO05D004767 5.7e-09 65.1 94 41.5
Hma1.2p1_0269F.1_g107810 Hydrangea macrophylla HOM05D003670 ORTHO05D004767 7.5e-09 64.7 49 65.3
MCO09G588 Micromonas commoda HOM05D003670 ORTHO05D004767 1.1e-07 60.8 79 45.6
Pp3c9_17670 Physcomitrium patens HOM05D003670 ORTHO05D004767 1.1e-07 60.8 60 53.3
CBR_g17038 Chara braunii HOM05D003670 ORTHO05D004767 1.8e-07 60.1 95 37.9
BcaC05g28269 Brassica carinata HOM05D003670 ORTHO05D014971 7.0e-07 58.2 48 60.4
Hma1.2p1_1039F.1_g250810 Hydrangea macrophylla HOM05D001854 ORTHO05D001800 2.7e-06 56.2 39 69.2
QL04p088979 Quercus lobata HOM05D003670 ORTHO05D004767 3.5e-06 55.8 40 65.0
C02p36310 Brassica napus HOM05D003670 ORTHO05D004767 5.9e-06 55.1 47 57.4


User provided reference genes

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