Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc06g009690.3 Solanum lycopersicum HOM05D006228 ORTHO05D007847 2.1e-258 895.2 458 100.0
PGSC0003DMG400007303 Solanum tuberosum HOM05D006228 ORTHO05D007847 3.5e-245 851.3 458 95.2
Sopen06g004350 Solanum pennellii HOM05D006228 ORTHO05D007847 6.0e-237 823.9 426 98.6
CAN.G1280.21 Capsicum annuum HOM05D006228 ORTHO05D007847 3.1e-217 758.4 440 87.0
Nitab4.5_0012179g0020 Nicotiana tabacum HOM05D006228 ORTHO05D007847 1.3e-188 663.3 459 76.7
Nitab4.5_0000278g0180 Nicotiana tabacum HOM05D006228 ORTHO05D007847 2.9e-183 645.6 427 78.0
Peaxi162Scf00401g00030 Petunia axillaris HOM05D006228 ORTHO05D007847 3.0e-180 635.6 426 77.2
Dinv34431 Davidia involucrata HOM05D006228 ORTHO05D007847 7.2e-166 587.8 439 67.4
Actinidia13913 Actinidia chinensis HOM05D006228 ORTHO05D007847 2.6e-160 569.3 438 64.4
Cc02_g06990 Coffea canephora HOM05D006228 ORTHO05D007847 7.5e-155 551.2 434 64.7
CSS0000174 Camellia sinensis var. sinensis HOM05D006228 ORTHO05D007847 3.7e-154 548.9 431 65.2
CSS0026214 Camellia sinensis var. sinensis HOM05D006228 ORTHO05D007847 2.4e-153 546.2 441 64.6
TAR633G1830 Trochodendron aralioides HOM05D006228 ORTHO05D007847 2.9e-151 539.3 442 60.2
Prupe.2G245100 Prunus persica HOM05D006228 ORTHO05D007847 1.2e-149 533.9 437 62.9
Rhsim09G0171700 Rhododendron simsii HOM05D006228 ORTHO05D007847 2.1e-149 533.1 452 61.1
Migut.F00709 Erythranthe guttata HOM05D006228 ORTHO05D007847 1.3e-146 523.9 414 63.8
Haze_17175 Corylus avellana HOM05D006228 ORTHO05D007847 9.1e-145 517.7 441 58.7
CiPaw.01G295100 Carya illinoinensis HOM05D006228 ORTHO05D007847 2.7e-144 516.2 440 58.4
Potri.008G063500 Populus trichocarpa HOM05D006228 ORTHO05D007847 2.3e-143 513.1 438 60.7
GSVIVG01016380001 Vitis vinifera HOM05D006228 ORTHO05D007847 2.3e-143 513.1 444 59.2
MD07G1212900 Malus domestica HOM05D006228 ORTHO05D007847 1.1e-142 510.8 441 59.9
Oeu006660.1 Olea europaea HOM05D006228 ORTHO05D007847 1.5e-142 510.4 420 63.3
MBI14_g08147_MAGBIO Magnolia biondii HOM05D006228 ORTHO05D007847 9.5e-142 507.7 429 60.4
Thecc.10G027500 Theobroma cacao HOM05D006228 ORTHO05D007847 1.6e-141 506.9 412 61.4
Lj1A949T58 Lonicera japonica HOM05D006228 ORTHO05D007847 1.8e-140 503.4 453 59.4
RcHm_v2.0_Chr1g0369221 Rosa chinensis HOM05D006228 ORTHO05D007847 3.0e-140 502.7 431 58.0
TWI09G0225 Tripterygium wilfordii HOM05D006228 ORTHO05D007847 3.0e-140 502.7 420 59.3
Manes.10G018500 Manihot esculenta HOM05D006228 ORTHO05D007847 4.0e-140 502.3 437 59.7
Nn2g13585 Nelumbo nucifera HOM05D006228 ORTHO05D007847 8.8e-140 501.1 420 61.0
Medtr3g070010 Medicago truncatula HOM05D006228 ORTHO05D007847 1.7e-138 496.9 424 57.3
Cfa005508 Carpinus fangiana HOM05D006228 ORTHO05D007847 2.2e-138 496.5 429 58.5
TPR.G29810 Trifolium pratense HOM05D006228 ORTHO05D007847 2.2e-138 496.5 414 58.5
SGA_v2.0_scaffold2G01060 Striga asiatica HOM05D006228 ORTHO05D007847 2.8e-138 496.1 422 61.4
COL.COLO4_25614 Corchorus olitorius HOM05D006228 ORTHO05D007847 6.3e-138 495.0 412 60.2
Lj6g0016911 Lotus japonicus HOM05D006228 ORTHO05D007847 1.0e-135 487.6 422 59.2
Gorai.010G199300 Gossypium raimondii HOM05D006228 ORTHO05D007847 2.3e-135 486.5 410 59.5
Ca_17139_v3 Cicer arietinum L. HOM05D006228 ORTHO05D007847 2.9e-135 486.1 418 57.2
CsaV3_5G008840 Cucumis sativus L. HOM05D006228 ORTHO05D007847 3.8e-135 485.7 430 57.2
Gohir.D06G170400 Gossypium hirsutum HOM05D006228 ORTHO05D007847 5.0e-135 485.3 410 59.3
FAN03G1418 Fragaria x ananassa HOM05D006228 ORTHO05D007847 6.6e-135 485.0 426 56.8
PSO384G3635 Papaver somniferum HOM05D006228 ORTHO05D007847 1.1e-134 484.2 431 56.8
Gohir.A06G164900 Gossypium hirsutum HOM05D006228 ORTHO05D007847 5.6e-134 481.9 410 59.0
Psat5g127520 Pisum sativum HOM05D006228 ORTHO05D007847 5.6e-134 481.9 418 56.0
ClCG11G010510 Citrullus lanatus HOM05D006228 ORTHO05D007847 1.6e-133 480.3 429 57.1
Sed0002982 Sechium edule HOM05D006228 ORTHO05D007847 8.0e-133 478.0 421 58.7
Aqoxy1G00736 Aquilegia oxysepala HOM05D006228 ORTHO05D007847 1.0e-132 477.6 430 57.4
VMungo1383G2528 Vigna mungo HOM05D006228 ORTHO05D007847 1.4e-132 477.2 423 56.3
SalBow5G2373 Salvia bowleyana HOM05D006228 ORTHO05D007847 1.8e-132 476.9 401 62.1
FAN06G4757 Fragaria x ananassa HOM05D006228 ORTHO05D007847 6.8e-132 474.9 436 55.5
FAN01G0169 Fragaria x ananassa HOM05D006228 ORTHO05D007847 1.5e-131 473.8 436 55.5
Glyma.18G031000 Glycine max HOM05D006228 ORTHO05D007847 1.5e-131 473.8 410 58.3
Aqoxy3G00589 Aquilegia oxysepala HOM05D006228 ORTHO05D007847 4.4e-131 472.2 430 57.2
FvH4_7g23870 Fragaria vesca HOM05D006228 ORTHO05D007847 9.8e-131 471.1 433 55.7
Sabra08G0046800 Salix brachista HOM05D006228 ORTHO05D007847 1.3e-130 470.7 436 57.6
AUR62022833 Chenopodium quinoa HOM05D006228 ORTHO05D007847 3.7e-130 469.2 427 57.4
Hma1.2p1_0026F.1_g016930 Hydrangea macrophylla HOM05D006228 ORTHO05D007847 3.7e-130 469.2 308 71.8
EL10Ac2g04780 Beta vulgaris HOM05D006228 ORTHO05D007847 1.4e-129 467.2 418 57.7
Lalb_Chr18g0052781 Lupinus albus HOM05D006228 ORTHO05D007847 3.2e-129 466.1 418 57.2
THA.LOC104810050 Tarenaya hassleriana HOM05D006228 ORTHO05D007847 5.0e-127 458.8 434 54.4
HanXRQChr09g0246891 Helianthus annuus HOM05D006228 ORTHO05D007847 5.6e-126 455.3 429 55.5
Ah.16g103060 Amaranthus hybridus HOM05D006228 ORTHO05D007847 1.6e-125 453.8 422 56.6
ECA232G3403 Erigeron canadensis HOM05D006228 ORTHO05D007847 8.0e-125 451.4 418 56.7
arahy.Tifrunner.gnm1.ann1.H1F5T1 Arachis hypogaea HOM05D006228 ORTHO05D007847 5.2e-124 448.7 435 54.5
vmacro10067 Vaccinium macrocarpon HOM05D006228 ORTHO05D007847 5.2e-124 448.7 495 52.1
Sp4g22220 Schrenkiella parvula HOM05D006228 ORTHO05D007847 1.5e-123 447.2 421 53.4
Aa31LG5G19710 Aethionema arabicum HOM05D006228 ORTHO05D007847 2.6e-123 446.4 424 53.5
MELO3C025144.2 Cucumis melo HOM05D006228 ORTHO05D007847 2.6e-123 446.4 441 53.7
Phvul.001G239600 Phaseolus vulgaris HOM05D006228 ORTHO05D007847 4.4e-123 445.7 414 55.1
Duzib106G2031 Durio zibethinus HOM05D006228 ORTHO05D007847 5.8e-123 445.3 416 55.0
Hund13827 Selenicereus undatus HOM05D006228 ORTHO05D007847 2.9e-122 443.0 480 51.0
AL4G37490 Arabidopsis lyrata HOM05D006228 ORTHO05D007847 4.9e-122 442.2 420 52.6
AT2G39910 Arabidopsis thaliana HOM05D006228 ORTHO05D007847 1.4e-121 440.7 420 52.9
AUR62012200 Chenopodium quinoa HOM05D006228 ORTHO05D007847 4.1e-121 439.1 427 53.6
BolC3t15036H Brassica oleracea HOM05D006228 ORTHO05D007847 5.4e-121 438.7 420 52.6
DCAR_011778 Daucus carota HOM05D006228 ORTHO05D007847 5.4e-121 438.7 424 55.7
Thhalv10016686m.g Eutrema salsugineum HOM05D006228 ORTHO05D007847 7.0e-121 438.3 420 53.3
PGR044G0451 Punica granatum HOM05D006228 ORTHO05D007847 2.7e-120 436.4 440 55.5
C03p26500 Brassica napus HOM05D006228 ORTHO05D007847 6.0e-120 435.3 420 52.1
A03p22360 Brassica napus HOM05D006228 ORTHO05D007847 1.7e-119 433.7 444 50.0
BcaC01g05454 Brassica carinata HOM05D006228 ORTHO05D007847 6.6e-119 431.8 420 52.1
Lsat_1_v5_gn_9_63220 Lactuca sativa HOM05D006228 ORTHO05D007847 6.6e-119 431.8 412 56.3
BraA03t11466Z Brassica rapa HOM05D006228 ORTHO05D007847 1.5e-118 430.6 422 51.4
CARHR134830 Cardamine hirsuta HOM05D006228 ORTHO05D007847 1.5e-118 430.6 417 52.8
SHI03521 Sapria himalayana HOM05D006228 ORTHO05D007847 5.6e-118 428.7 421 54.2
Sc11g0007370 Simmondsia chinensis HOM05D006228 ORTHO05D007847 1.6e-117 427.2 363 59.8
Carub.0004s2204 Capsella rubella HOM05D006228 ORTHO05D007847 2.8e-117 426.4 421 51.8
BcaB01g03579 Brassica carinata HOM05D006228 ORTHO05D007847 6.2e-117 425.2 427 50.8
FAN10G3493 Fragaria x ananassa HOM05D006228 ORTHO05D007847 1.9e-113 413.7 431 52.2
ATR0580G418 Amborella trichopoda HOM05D006228 ORTHO05D007847 5.4e-113 412.1 414 51.4
Atru.chr12.264 Acer truncatum HOM05D006228 ORTHO05D007847 1.2e-112 411.0 373 56.3
Ciclev10031701m.g Citrus clementina HOM05D006228 ORTHO05D007847 3.5e-112 409.5 421 54.2
PSO585G0034 Papaver somniferum HOM05D006228 ORTHO05D007847 3.5e-112 409.5 300 65.0
Zm00001eb226270 Zea mays HOM05D006228 ORTHO05D007847 1.5e-110 404.1 416 51.4
Os06g0694100 Oryza sativa ssp. japonica HOM05D006228 ORTHO05D007847 1.4e-105 387.5 418 49.8
unitig_747.g21715 Utricularia gibba HOM05D006228 ORTHO05D007847 2.4e-105 386.7 418 51.0
arahy.Tifrunner.gnm1.ann1.PGVU2S Arachis hypogaea HOM05D006228 ORTHO05D007847 5.2e-100 369.0 352 55.7
Eucgr.J00246 Eucalyptus grandis HOM05D006228 ORTHO05D007847 2.2e-98 363.6 445 47.9
SEGI_03712 Sequoiadendron giganteum HOM05D006228 ORTHO05D007847 3.8e-90 336.3 436 43.1
CDE05G2573 Ceratophyllum demersum HOM05D006228 ORTHO05D007847 4.2e-89 332.8 361 51.5
FAN06G0021 Fragaria x ananassa HOM05D006228 ORTHO05D007847 8.1e-85 318.5 319 52.7
Cpa.g.sc19.228 Carica papaya HOM05D006228 ORTHO05D007847 2.4e-68 263.8 427 38.4
Actinidia00930 Actinidia chinensis HOM05D006228 ORTHO05D007847 6.1e-56 222.6 154 68.8
HPP92_018568 Vanilla planifolia HOM05D006228 ORTHO05D007847 1.4e-55 221.5 268 45.1
QL08p062537 Quercus lobata HOM05D006228 ORTHO05D007847 5.1e-55 219.5 147 69.4
AagrBONN_evm.TU.Sc2ySwM_344.5121 Anthoceros agrestis HOM05D006228 ORTHO05D007847 5.7e-54 216.1 375 33.6
RcHm_v2.0_Chr2g0110551 Rosa chinensis HOM05D006228 ORTHO05D007847 1.7e-53 214.5 148 66.2
BcaC02g07378 Brassica carinata HOM05D006228 ORTHO05D007847 2.8e-53 213.8 254 45.7
BcaB06g29116 Brassica carinata HOM05D006228 ORTHO05D007847 1.4e-52 211.5 240 45.4
Sed0008304 Sechium edule HOM05D006228 ORTHO05D007847 2.0e-51 207.6 376 37.8
MSTRG.8975 Avicennia marina HOM05D006228 ORTHO05D007847 5.0e-50 203.0 212 55.2
Pp3c11_8050 Physcomitrium patens HOM05D006228 ORTHO05D007847 1.1e-49 201.8 253 39.5
Mapoly0014s0032 Marchantia polymorpha HOM05D006228 ORTHO05D007847 2.5e-49 200.7 359 33.1
SMO273G0042 Selaginella moellendorffii HOM05D006228 ORTHO05D007847 4.2e-49 199.9 253 39.9
HPP92_018569 Vanilla planifolia HOM05D006228 ORTHO05D007847 5.9e-43 179.5 140 56.4
RcHm_v2.0_Chr1g0339731 Rosa chinensis HOM05D006228 ORTHO05D007847 7.2e-41 172.6 148 58.8
Actinidia25353 Actinidia chinensis HOM05D006228 ORTHO05D007847 1.3e-37 161.8 162 53.7
SMO147G0063 Selaginella moellendorffii HOM05D006228 ORTHO05D007847 2.7e-35 154.1 253 33.6
BolC4t28269H Brassica oleracea HOM05D006228 ORTHO05D007847 4.2e-33 146.7 159 45.9
MCO16G020 Micromonas commoda HOM05D006228 ORTHO05D007847 6.6e-18 96.3 289 23.9
arahy.Tifrunner.gnm1.ann1.DSNI2G Arachis hypogaea HOM05D002669 ORTHO05D003001 3.4e-14 84.0 61 65.6
arahy.Tifrunner.gnm1.ann1.YTZ5F3 Arachis hypogaea HOM05D006228 ORTHO05D007847 4.4e-14 83.6 61 67.2
Cre01.g048600 Chlamydomonas reinhardtii HOM05D006228 ORTHO05D007847 1.7e-13 81.6 221 24.9
C04p67680 Brassica napus HOM05D006228 ORTHO05D007847 1.9e-12 78.2 106 38.7
PRCOL_00002967 Prasinoderma coloniale HOM05D006228 ORTHO05D007847 2.8e-08 64.3 175 26.3
Nitab4.5_0001379g0140 Nicotiana tabacum HOM05D006228 ORTHO05D007847 4.0e-07 60.5 31 87.1


User provided reference genes

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